You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
2 |
3,715 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
mpi / jd2 with AbinitioRelax and relax (3.2) by smg3d » Wed, 2011-02-09 10:39 |
25 |
24,836 |
by Gaurav_kumar Mon, 2014-04-21 06:47 |
|
|
Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
4,125 |
by ltrabuco Mon, 2014-04-21 06:47 |
|
|
questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
5 |
5,416 |
by zeynep Mon, 2014-04-21 06:47 |
|
|
ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
5 |
8,094 |
by albumns Mon, 2014-04-21 06:47 |
|
|
How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
3,387 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
1 |
2,147 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,756 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
7 |
8,848 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
2,281 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
6 |
5,004 |
by albumns Mon, 2014-04-21 06:47 |
|
|
make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,845 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
1 |
2,398 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
4 |
5,323 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
4,492 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
3 |
3,465 |
by scombs Mon, 2014-04-21 06:47 |
|
|
NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
1 |
2,307 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
1 |
2,213 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
0 |
1,602 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
2 |
4,515 |
by knutjbj Mon, 2014-04-21 06:47 |
|
|
idealization error by albumns » Mon, 2011-02-07 01:28 |
1 |
2,176 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
2,183 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
4,395 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
12 |
14,344 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
3,511 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
1 |
2,394 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,533 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
12 |
11,210 |
by monos_morpheus Mon, 2014-04-21 06:47 |
|
|
does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
5,243 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
11,382 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
5 |
5,019 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
4,674 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,693 |
by einew Mon, 2014-04-21 06:47 |
|
|
Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,857 |
by kaue Mon, 2014-04-21 06:47 |
|
|
about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
1 |
3,363 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
1 |
2,285 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
1 |
2,201 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
1 |
2,201 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
1 |
2,426 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
6 |
6,285 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Collecting 3.2 documentation holes by smlewis » Wed, 2011-01-26 10:39 |
23 |
19,301 |
by FrankVerdin86 Mon, 2014-04-21 06:47 |
|
|
RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
4 |
5,055 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
6 |
6,493 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
7,516 |
by dgront Mon, 2014-04-21 06:47 |
|
|
Rosetta groups in Scandinavia by knutjbj » Mon, 2010-11-15 23:50 |
1 |
2,306 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,425 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
1 |
2,227 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
6,456 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,873 |
by joseph Mon, 2014-04-21 06:47 |
|
|
high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
17 |
14,158 |
by albumns Mon, 2014-04-21 06:47 |
|
|
could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
1 |
2,487 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
2 |
3,303 |
by ndousis Mon, 2014-04-21 06:47 |
|
|
Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
1 |
2,438 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
1 |
2,516 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
3 |
5,994 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
4 |
4,485 |
by albumns Mon, 2014-04-21 06:47 |
|
|
general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
1 |
2,477 |
by JeffreyGray Mon, 2014-04-21 06:47 |
|
|
Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
2 |
2,848 |
by barak Mon, 2014-04-21 06:47 |
|
|
Running Backrub by enoee » Wed, 2010-10-27 07:51 |
1 |
2,267 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
5,359 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
1 |
2,464 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
6 |
7,664 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
3,138 |
by lvtun Mon, 2014-04-21 06:47 |
|
|
ddG from backrub by jte » Tue, 2010-10-05 14:09 |
3 |
3,359 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,624 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
1 |
2,018 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
4 |
6,444 |
by kwak Mon, 2014-04-21 06:47 |
|
|
Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
5 |
6,002 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
2 |
2,825 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
3 |
4,295 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
2 |
2,549 |
by dnasmith Mon, 2014-04-21 06:47 |
|
|
RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
1 |
2,442 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
2 |
2,886 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
5 |
7,871 |
by mahajanr Mon, 2014-04-21 06:47 |
|
|
local refinement by mahajanr » Mon, 2010-07-19 15:04 |
1 |
2,213 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
6 |
5,672 |
by biofisikx Mon, 2014-04-21 06:47 |
|
|
Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
2,309 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
1 |
2,795 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
1 |
2,335 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
2,260 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
3 |
3,247 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1 by Marsia » Thu, 2010-07-22 22:49 |
18 |
15,909 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
1 |
1,967 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
4,490 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RNA Parameter File by hdavis9 » Tue, 2010-07-06 11:36 |
4 |
3,991 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,464 |
by albumns Mon, 2014-04-21 06:47 |
|
|
Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
5,194 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,890 |
by zharmad Mon, 2014-04-21 06:47 |
|
|
input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
2 |
2,674 |
by biofisikx Mon, 2014-04-21 06:47 |
|
|
how to get reliable results for carbohydrate docking? by albumns » Sun, 2010-09-05 23:12 |
3 |
4,922 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
4 |
3,931 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
2,597 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
1 |
1,961 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta 3.1 compile error, Linux 32 bit by viochemist » Thu, 2010-07-29 08:40 |
11 |
12,532 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,840 |
by louisclark Mon, 2014-04-21 06:47 |
|
|
what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
1 |
2,165 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
PDB output sum by enoee » Fri, 2010-07-16 12:29 |
1 |
2,157 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
4 |
4,269 |
by japgar Mon, 2014-04-21 06:47 |
|
|
disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
2 |
3,228 |
by pledor Mon, 2014-04-21 06:47 |
|
|
Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
3 |
3,619 |
by smlewis Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
