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Rosetta 3 - General

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Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
857 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
3,651 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
2,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,329 by smlewis
Wed, 2017-06-28 06:59
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
2,921 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
2,391 by kalabharath
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50
30
22,082 by smlewis
Mon, 2014-04-21 06:47
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
635 by vmulligan
Wed, 2021-04-28 14:20
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,735 by rmoretti
Tue, 2016-07-12 08:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,943 by smlewis
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
12,805 by tevang
Mon, 2014-04-21 06:47
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,053 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
361 by rmoretti
Tue, 2021-11-30 07:41
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,767 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,188 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
569 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
4,852 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
1,635 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
976 by nzsuzsanna
Tue, 2016-05-10 07:39
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
14,929 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
7,611 by rmoretti
Mon, 2016-05-09 09:23
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
2,941 by zharmad
Mon, 2014-04-21 06:47
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,165 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
4,009 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
4,247 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
3,572 by IAndre
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,503 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,770 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,485 by IAndre
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,587 by doranhen
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,031 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,638 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
7,193 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
5,332 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
13,170 by rmoretti
Mon, 2014-04-21 06:48
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,282 by rmoretti
Tue, 2016-07-12 08:48
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,156 by doranhen
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,593 by rmoretti
Sat, 2018-03-17 10:43
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
1,932 by asbelx
Thu, 2018-04-26 00:23
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
6,775 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,964 by jrcf
Fri, 2015-10-16 10:57
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
2,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,553 by rmoretti
Fri, 2015-07-03 13:14
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
2,009 by smlewis
Mon, 2014-04-21 06:47
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
493 by asbelx
Wed, 2021-09-08 23:19
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,095 by rmoretti
Tue, 2019-07-09 15:57
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
2,833 by rmoretti
Mon, 2018-01-15 15:34
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
3,265 by ac.research
Mon, 2017-09-04 16:43
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
642 by rmoretti
Wed, 2021-02-03 14:45
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
5,037 by vmulligan
Thu, 2020-07-16 23:31
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
1,220 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
5,277 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
1,490 by rmoretti
Thu, 2018-06-28 14:28
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,842 by smlewis
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
2,942 by alejandro
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
3,510 by einew
Mon, 2014-04-21 06:47
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
4,757 by Anonymous
Mon, 2014-04-21 06:47
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
4,022 by rohi
Sun, 2020-07-26 17:03
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
3,394 by rmoretti
Thu, 2017-08-03 09:01
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
1,731 by frichter
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
3,574 by cheyuk
Sun, 2015-09-20 02:08
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
846 by rmoretti
Mon, 2019-08-26 14:52
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
1,333 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,470 by rmoretti
Tue, 2015-10-27 08:46
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
6,192 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
1,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
2,822 by rmoretti
Mon, 2014-04-21 06:47
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
3,494 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI
by linucks » Tue, 2018-02-13 03:41
4
2,731 by linucks
Fri, 2018-02-23 08:08
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,363 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
554 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
4,912 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,860 by rmoretti
Mon, 2015-03-30 14:43
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
797 by matteoferla
Tue, 2020-04-14 03:36
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
5,233 by einew
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,910 by Al52
Tue, 2015-12-01 18:22
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
6,815 by ndousis
Mon, 2014-04-21 06:47
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49
7
7,081 by moehle
Mon, 2014-04-21 06:47
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
3,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
9,038 by jurkm
Mon, 2014-04-21 06:47
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,496 by jurkm
Mon, 2014-04-21 06:47
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
606 by rohi
Thu, 2020-10-15 10:28
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,248 by smlewis
Wed, 2017-03-22 14:02
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
2,634 by scombs
Mon, 2014-04-21 06:47
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
535 by ate
Sat, 2021-05-01 02:52
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
491 by ate
Sat, 2021-05-01 02:22
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
1,797 by htorres
Mon, 2018-02-05 06:53
Normal topic Using Patches in Rosetta
by JS » Wed, 2010-03-10 13:32
6
6,614 by JS
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
2,290 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
6,154 by dgront
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
2,796 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
9,012 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,198 by IgaK
Mon, 2014-04-21 06:47
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
163 by rjacak
Thu, 2022-03-31 10:53
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,181 by louisclark
Mon, 2014-04-21 06:47
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
2,252 by smlewis
Thu, 2016-06-30 08:44
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
618 by jmaly
Wed, 2020-09-02 16:16
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
7,088 by smlewis
Mon, 2014-04-21 06:47
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