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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Run protein-protein docking parallelly by mpi
by Zehui Zhou » Thu, 2023-02-02 06:23
3
226 by Zehui Zhou
Fri, 2023-02-03 05:51
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,944 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,884 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
5,105 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,987 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
1,116 by Jhreed
Fri, 2016-07-08 13:44
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,417 by tevang
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
3,825 by cneale
Fri, 2014-03-21 18:13
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,249 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
1,443 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,822 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,367 by gerdos
Fri, 2015-10-16 03:01
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
2,269 by exchhattu
Mon, 2014-04-21 06:47
Normal topic RuntimeError: CUDA out of memory.
by ravi.thakkar » Tue, 2023-03-07 00:27
2
209 by rmoretti
Tue, 2023-03-07 08:18
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,417 by sumukh21
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
830 by matteoferla
Sun, 2020-03-22 05:29
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
6,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic Save silent results to individual directory by process ID
by Payne » Sat, 2022-09-24 05:23
3
462 by rmoretti
Thu, 2022-09-29 00:15
Hot topic SCons compilation error (Windows XP, 32bit)
by CRickert » Mon, 2009-08-03 00:57
28
21,913 by Marsia
Mon, 2014-04-21 06:47
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
683 by LanMei
Tue, 2022-03-22 20:45
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,323 by mmarlett
Thu, 2016-06-16 07:06
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,168 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Score function in protein-protein docking with constrains
by Zehui Zhou » Mon, 2023-02-06 03:31
2
288 by Zehui Zhou
Wed, 2023-02-15 05:40
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
1,090 by rmoretti
Tue, 2020-10-13 11:40
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,888 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
553 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,165 by rmoretti
Thu, 2015-04-02 12:52
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
3,250 by everyday847
Tue, 2017-11-28 13:07
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,752 by Trentage
Mon, 2014-04-21 06:47
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
0
35 by mrosam
Thu, 2023-05-25 05:14
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,974 by aroop
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,752 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
870 by rmoretti
Wed, 2021-07-14 07:07
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
5,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,662 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,322 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
759 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
2,404 by matteoferla
Mon, 2019-12-23 07:24
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,316 by smlewis
Mon, 2014-04-21 06:47
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
3,865 by smlewis
Wed, 2018-03-21 08:42
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
542 by Soler
Sat, 2021-11-20 23:41
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,956 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
1,076 by almeida85
Mon, 2021-02-08 09:50
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,614 by Sandy
Fri, 2015-08-07 15:49
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,751 by smlewis
Mon, 2018-04-16 16:32
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
588 by dkesar
Fri, 2021-06-04 19:09
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
3,252 by smlewis
Wed, 2018-04-11 11:45
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
0
129 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
3,169 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,579 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
960 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
313 by rmoretti
Wed, 2022-09-07 09:19
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,885 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,005 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,121 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,852 by rmoretti
Thu, 2016-04-28 15:49
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
495 by ajasja
Mon, 2022-05-23 07:19
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,353 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,089 by smlewis
Wed, 2016-07-13 23:41
Normal topic Should all input structures to energy_based_clustering have an output pdb file?
by Brian Wiley » Mon, 2023-01-30 20:42
2
189 by Brian Wiley
Tue, 2023-01-31 19:08
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
3,024 by smlewis
Mon, 2014-04-21 06:47
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
897 by matteoferla
Thu, 2021-04-01 04:06
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
815 by Kazu
Wed, 2020-05-20 11:58
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
4,002 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,934 by qlj
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
4,136 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
3,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,405 by gipsonb
Mon, 2014-04-21 06:47
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,083 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
1,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
1,395 by rmoretti
Wed, 2021-03-17 13:52
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,888 by Ashafix
Wed, 2014-02-19 06:53
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,368 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,021 by smlewis
Mon, 2014-04-21 06:47
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,401 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
471 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
1,057 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
4,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
3,405 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,616 by smlewis
Wed, 2017-06-28 06:59
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
3,474 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
2,776 by kalabharath
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50
30
24,953 by smlewis
Mon, 2014-04-21 06:47
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,088 by vmulligan
Wed, 2021-04-28 14:20
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,603 by smlewis
Mon, 2014-04-21 06:47
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,036 by rmoretti
Tue, 2016-07-12 08:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,189 by smlewis
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
14,700 by tevang
Mon, 2014-04-21 06:47
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,442 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
755 by rmoretti
Tue, 2021-11-30 07:41
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,970 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
213 by JW_24
Tue, 2023-01-24 04:55
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,637 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
769 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
5,785 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
1,946 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,170 by nzsuzsanna
Tue, 2016-05-10 07:39
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
16,983 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
8,767 by rmoretti
Mon, 2016-05-09 09:23
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