You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
1 |
2,086 |
by jadolfbr Fri, 2015-02-27 11:08 |
|
|
Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
1 |
995 |
by rmoretti Tue, 2020-10-13 11:40 |
|
|
score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
3,739 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
2 |
421 |
by johnnytam100 Tue, 2022-06-07 19:18 |
|
|
scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
1 |
2,096 |
by rmoretti Thu, 2015-04-02 12:52 |
|
|
score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,019 |
by everyday847 Tue, 2017-11-28 13:07 |
|
|
Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
0 |
1,698 |
by Trentage Mon, 2014-04-21 06:47 |
|
|
Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
4,791 |
by aroop Mon, 2014-04-21 06:47 |
|
|
scoring function changed from 2.3? by jarod » Mon, 2010-04-12 18:56 |
1 |
1,681 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
1 |
781 |
by rmoretti Wed, 2021-07-14 07:07 |
|
|
scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
5,039 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
2,218 |
by SergeyP Fri, 2017-03-10 11:16 |
|
|
Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
708 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
|
|
Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
2,251 |
by matteoferla Mon, 2019-12-23 07:24 |
|
|
secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
1 |
3,242 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
5 |
3,567 |
by smlewis Wed, 2018-03-21 08:42 |
|
|
SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
0 |
487 |
by Soler Sat, 2021-11-20 23:41 |
|
|
segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
1 |
1,879 |
by yarovoy Wed, 2016-03-30 12:37 |
|
|
Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
2 |
977 |
by almeida85 Mon, 2021-02-08 09:50 |
|
|
Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
4,460 |
by Sandy Fri, 2015-08-07 15:49 |
|
|
Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
1 |
1,676 |
by smlewis Mon, 2018-04-16 16:32 |
|
|
Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
0 |
535 |
by dkesar Fri, 2021-06-04 19:09 |
|
|
segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
3,080 |
by smlewis Wed, 2018-04-11 11:45 |
|
|
selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
6 |
2,929 |
by matteoferla Tue, 2020-08-11 10:00 |
|
|
Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,479 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
1 |
882 |
by taylorjones Mon, 2021-04-05 13:17 |
|
|
Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
1 |
212 |
by rmoretti Wed, 2022-09-07 09:19 |
|
|
sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
3 |
2,754 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
|
|
sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
2,875 |
by rmoretti Mon, 2015-05-25 11:00 |
|
|
Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
1 |
1,043 |
by pedro.guillem Wed, 2020-06-24 04:41 |
|
|
setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
1 |
1,772 |
by rmoretti Thu, 2016-04-28 15:49 |
|
|
ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
1 |
399 |
by ajasja Mon, 2022-05-23 07:19 |
|
|
shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
0 |
1,310 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
3,929 |
by smlewis Wed, 2016-07-13 23:41 |
|
|
Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
2 |
40 |
by Brian Wiley Tue, 2023-01-31 19:08 |
|
|
should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
3 |
2,887 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
811 |
by matteoferla Thu, 2021-04-01 04:06 |
|
|
Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
756 |
by Kazu Wed, 2020-05-20 11:58 |
|
|
Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
3,859 |
by jadolfbr Mon, 2014-04-21 21:05 |
|
|
side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
7,706 |
by qlj Mon, 2014-04-21 06:47 |
|
|
sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
3,980 |
by Lindsay Mon, 2014-04-21 06:48 |
|
|
Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
3 |
2,916 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,271 |
by gipsonb Mon, 2014-04-21 06:47 |
|
|
simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
1,006 |
by vmulligan Mon, 2020-06-29 13:09 |
|
|
Site-wide installations and 64-bit builds by bene » Tue, 2009-10-20 10:16 |
1 |
1,738 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
1,243 |
by rmoretti Wed, 2021-03-17 13:52 |
|
|
smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
4,751 |
by Ashafix Wed, 2014-02-19 06:53 |
|
|
SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,289 |
by jeliazkov Tue, 2017-07-18 09:51 |
|
|
Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
1 |
2,189 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
1 |
1,938 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,297 |
by SenyorDrew Wed, 2016-04-06 10:52 |
|
|
SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
0 |
403 |
by hanzhiz Thu, 2021-12-16 09:18 |
|
|
solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
993 |
by ziqi1234 Thu, 2018-05-24 02:18 |
|
|
solvation by gw » Wed, 2011-08-31 17:14 |
4 |
3,999 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,258 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
1 |
1,537 |
by smlewis Wed, 2017-06-28 06:59 |
|
|
span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
3,321 |
by zhiguang Tue, 2016-11-15 12:27 |
|
|
Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
2,682 |
by kalabharath Mon, 2014-04-21 06:47 |
|
|
Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
30 |
24,134 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
1 |
957 |
by vmulligan Wed, 2021-04-28 14:20 |
|
|
spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,477 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
1,957 |
by rmoretti Tue, 2016-07-12 08:47 |
|
|
start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
1 |
2,108 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
15 |
14,189 |
by tevang Mon, 2014-04-21 06:47 |
|
|
str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
1,332 |
by pedro.guillem Wed, 2020-06-24 04:49 |
|
|
Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
1 |
660 |
by rmoretti Tue, 2021-11-30 07:41 |
|
|
Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
1 |
2,896 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
1 |
109 |
by JW_24 Tue, 2023-01-24 04:55 |
|
|
Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
2 |
3,513 |
by jcsaborio Mon, 2014-04-21 06:47 |
|
|
Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
724 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
|
|
Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
7 |
5,530 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
|
|
Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
1 |
1,856 |
by rmoretti Tue, 2018-01-30 09:08 |
|
|
Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
0 |
1,116 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
|
|
Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
18 |
16,472 |
by jadolfbr Wed, 2014-05-14 08:51 |
|
|
Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
8 |
8,436 |
by rmoretti Mon, 2016-05-09 09:23 |
|
|
Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,272 |
by zharmad Mon, 2014-04-21 06:47 |
|
|
Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,286 |
by lanselibai Sun, 2014-11-16 10:44 |
|
|
Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
5 |
4,586 |
by code_Monkey Thu, 2021-03-18 08:03 |
|
|
Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
4 |
4,552 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
3,889 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
1 |
1,695 |
by rmoretti Tue, 2016-09-13 07:41 |
|
|
Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
1 |
1,943 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
1 |
2,637 |
by IAndre Mon, 2014-04-21 06:47 |
|
|
symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
2,804 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,228 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
3,881 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,568 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
7 |
7,762 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
5,702 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
|
|
talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
8 |
14,668 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Temperature by mrosam » Mon, 2022-08-08 01:37 |
0 |
170 |
by mrosam Mon, 2022-08-08 01:37 |
|
|
TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,467 |
by rmoretti Tue, 2016-07-12 08:48 |
|
|
The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,377 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
1 |
1,847 |
by rmoretti Sat, 2018-03-17 10:43 |
|
|
The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
2 |
2,373 |
by asbelx Thu, 2018-04-26 00:23 |
|
|
The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
7,280 |
by Jacob-kong Mon, 2014-04-21 06:47 |
|
|
The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
2 |
3,249 |
by jrcf Fri, 2015-10-16 10:57 |
|
|
The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
2 |
505 |
by asbelx Mon, 2022-06-06 23:15 |
|
|
the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
2 |
3,105 |
by smlewis Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
