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Rosetta 3 - General
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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1,842 |
by David Tue, 2019-01-22 12:23 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
1 |
3,057 |
by rmoretti Fri, 2015-07-03 13:24 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
3,206 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,687 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
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1,489 |
by JW_24 Wed, 2020-09-23 01:27 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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3,249 |
by rmoretti Fri, 2018-08-03 11:39 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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398 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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2,971 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
7,320 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
5,200 |
by Karol Thu, 2016-12-15 01:35 |
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rosie github log in by YUANXU » Tue, 2023-04-25 20:13 |
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326 |
by Sergey Thu, 2023-04-27 12:03 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
5 |
5,531 |
by rmoretti Tue, 2021-02-09 11:52 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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1,800 |
by danpf Mon, 2021-05-10 10:04 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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5,126 |
by glemmon Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
4,551 |
by gw Mon, 2014-04-21 06:47 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
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2,729 |
by pachecoj Tue, 2014-11-11 19:30 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
3 |
638 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
4,194 |
by rmoretti Mon, 2014-04-21 06:48 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
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2,024 |
by smlewis Mon, 2014-04-21 06:47 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
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5,722 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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Running Backrub by enoee » Wed, 2010-10-27 07:51 |
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2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
1,218 |
by Jhreed Fri, 2016-07-08 13:44 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,513 |
by tevang Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
3 |
4,079 |
by cneale Fri, 2014-03-21 18:13 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
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1,424 |
by rmoretti Tue, 2021-02-09 13:44 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
3 |
1,837 |
by zhoubin Mon, 2021-03-01 22:11 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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2,002 |
by rmoretti Sun, 2016-02-21 06:38 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
2 |
2,595 |
by gerdos Fri, 2015-10-16 03:01 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
2,436 |
by exchhattu Mon, 2014-04-21 06:47 |
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RuntimeError: CUDA out of memory. by ravi.thakkar » Tue, 2023-03-07 00:27 |
2 |
539 |
by rmoretti Tue, 2023-03-07 08:18 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,524 |
by sumukh21 Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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944 |
by matteoferla Sun, 2020-03-22 05:29 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
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6,513 |
by smlewis Mon, 2014-04-21 06:47 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
3 |
828 |
by rmoretti Thu, 2022-09-29 00:15 |
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SCons compilation error (Windows XP, 32bit) by CRickert » Mon, 2009-08-03 00:57 |
28 |
23,465 |
by Marsia Mon, 2014-04-21 06:47 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
2 |
953 |
by LanMei Tue, 2022-03-22 20:45 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
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2,520 |
by mmarlett Thu, 2016-06-16 07:06 |
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score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
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2,322 |
by jadolfbr Fri, 2015-02-27 11:08 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
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659 |
by Zehui Zhou Wed, 2023-02-15 05:40 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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1,279 |
by rmoretti Tue, 2020-10-13 11:40 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
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4,161 |
by rmoretti Mon, 2014-04-21 06:48 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
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802 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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2,321 |
by rmoretti Thu, 2015-04-02 12:52 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,646 |
by everyday847 Tue, 2017-11-28 13:07 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
0 |
1,857 |
by Trentage Mon, 2014-04-21 06:47 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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230 |
by mrosam Thu, 2023-05-25 05:14 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
5,327 |
by aroop Mon, 2014-04-21 06:47 |
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scoring function changed from 2.3? by jarod » Mon, 2010-04-12 18:56 |
1 |
1,897 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
1 |
1,045 |
by rmoretti Wed, 2021-07-14 07:07 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
5,650 |
by rmoretti Mon, 2014-04-21 06:48 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,809 |
by smlewis Mon, 2014-04-21 06:47 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
2,540 |
by SergeyP Fri, 2017-03-10 11:16 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
865 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
2,755 |
by matteoferla Mon, 2019-12-23 07:24 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
1 |
3,452 |
by smlewis Mon, 2014-04-21 06:47 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
5 |
4,351 |
by smlewis Wed, 2018-03-21 08:42 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
0 |
657 |
by Soler Sat, 2021-11-20 23:41 |
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segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
1 |
2,104 |
by yarovoy Wed, 2016-03-30 12:37 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
2 |
1,312 |
by almeida85 Mon, 2021-02-08 09:50 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
4,870 |
by Sandy Fri, 2015-08-07 15:49 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
1 |
1,922 |
by smlewis Mon, 2018-04-16 16:32 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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698 |
by dkesar Fri, 2021-06-04 19:09 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
3,650 |
by smlewis Wed, 2018-04-11 11:45 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
0 |
315 |
by Brian Wiley Sun, 2023-02-12 20:46 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
6 |
3,684 |
by matteoferla Tue, 2020-08-11 10:00 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,761 |
by rmoretti Mon, 2014-04-21 06:47 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
1 |
1,134 |
by taylorjones Mon, 2021-04-05 13:17 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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553 |
by rmoretti Wed, 2022-09-07 09:19 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
3 |
3,138 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
3,258 |
by rmoretti Mon, 2015-05-25 11:00 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
1 |
1,292 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
1 |
2,011 |
by rmoretti Thu, 2016-04-28 15:49 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
1 |
655 |
by ajasja Mon, 2022-05-23 07:19 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
0 |
1,452 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,442 |
by smlewis Wed, 2016-07-13 23:41 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
2 |
514 |
by Brian Wiley Tue, 2023-01-31 19:08 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
3 |
3,284 |
by smlewis Mon, 2014-04-21 06:47 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
1,081 |
by matteoferla Thu, 2021-04-01 04:06 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
931 |
by Kazu Wed, 2020-05-20 11:58 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
4,296 |
by jadolfbr Mon, 2014-04-21 21:05 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
8,419 |
by qlj Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
4,403 |
by Lindsay Mon, 2014-04-21 06:48 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
3 |
3,312 |
by smlewis Mon, 2014-04-21 06:47 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
3 |
3,642 |
by gipsonb Mon, 2014-04-21 06:47 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
1,266 |
by vmulligan Mon, 2020-06-29 13:09 |
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Site-wide installations and 64-bit builds by bene » Tue, 2009-10-20 10:16 |
1 |
1,966 |
by smlewis Mon, 2014-04-21 06:47 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
1,707 |
by rmoretti Wed, 2021-03-17 13:52 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
5,131 |
by Ashafix Wed, 2014-02-19 06:53 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,538 |
by jeliazkov Tue, 2017-07-18 09:51 |
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Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
1 |
2,432 |
by smlewis Mon, 2014-04-21 06:47 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
1 |
2,168 |
by smlewis Mon, 2014-04-21 06:47 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,617 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
0 |
578 |
by hanzhiz Thu, 2021-12-16 09:18 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
1,178 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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solvation by gw » Wed, 2011-08-31 17:14 |
4 |
4,432 |
by smlewis Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,647 |
by smlewis Mon, 2014-04-21 06:47 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
1 |
1,786 |
by smlewis Wed, 2017-06-28 06:59 |
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span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
3,818 |
by zhiguang Tue, 2016-11-15 12:27 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
2,963 |
by kalabharath Mon, 2014-04-21 06:47 |
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Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
30 |
26,594 |
by smlewis Mon, 2014-04-21 06:47 |
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