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Rosetta 3 - General

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Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,086 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
995 by rmoretti
Tue, 2020-10-13 11:40
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,739 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
421 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,096 by rmoretti
Thu, 2015-04-02 12:52
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
3,019 by everyday847
Tue, 2017-11-28 13:07
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,698 by Trentage
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,791 by aroop
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,681 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
781 by rmoretti
Wed, 2021-07-14 07:07
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
5,039 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,218 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
708 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
2,251 by matteoferla
Mon, 2019-12-23 07:24
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,242 by smlewis
Mon, 2014-04-21 06:47
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
3,567 by smlewis
Wed, 2018-03-21 08:42
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
487 by Soler
Sat, 2021-11-20 23:41
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,879 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
977 by almeida85
Mon, 2021-02-08 09:50
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,460 by Sandy
Fri, 2015-08-07 15:49
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,676 by smlewis
Mon, 2018-04-16 16:32
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
535 by dkesar
Fri, 2021-06-04 19:09
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
3,080 by smlewis
Wed, 2018-04-11 11:45
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
2,929 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,479 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
882 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
212 by rmoretti
Wed, 2022-09-07 09:19
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,754 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,875 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,043 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,772 by rmoretti
Thu, 2016-04-28 15:49
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
399 by ajasja
Mon, 2022-05-23 07:19
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,310 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
3,929 by smlewis
Wed, 2016-07-13 23:41
Normal topic Should all input structures to energy_based_clustering have an output pdb file?
by Brian Wiley » Mon, 2023-01-30 20:42
2
40 by Brian Wiley
Tue, 2023-01-31 19:08
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
2,887 by smlewis
Mon, 2014-04-21 06:47
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
811 by matteoferla
Thu, 2021-04-01 04:06
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
756 by Kazu
Wed, 2020-05-20 11:58
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,859 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,706 by qlj
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,980 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
2,916 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,271 by gipsonb
Mon, 2014-04-21 06:47
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,006 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
1,738 by smlewis
Mon, 2014-04-21 06:47
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
1,243 by rmoretti
Wed, 2021-03-17 13:52
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,751 by Ashafix
Wed, 2014-02-19 06:53
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,289 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,189 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,938 by smlewis
Mon, 2014-04-21 06:47
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,297 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
403 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
993 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
3,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
3,258 by smlewis
Mon, 2014-04-21 06:47
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,537 by smlewis
Wed, 2017-06-28 06:59
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
3,321 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
2,682 by kalabharath
Mon, 2014-04-21 06:47
Hot topic Speeding up docking to a large complex
by skovacs » Thu, 2012-05-10 20:50
30
24,134 by smlewis
Mon, 2014-04-21 06:47
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
957 by vmulligan
Wed, 2021-04-28 14:20
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,477 by smlewis
Mon, 2014-04-21 06:47
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,957 by rmoretti
Tue, 2016-07-12 08:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,108 by smlewis
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
14,189 by tevang
Mon, 2014-04-21 06:47
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,332 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
660 by rmoretti
Tue, 2021-11-30 07:41
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,896 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
109 by JW_24
Tue, 2023-01-24 04:55
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,513 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
724 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
5,530 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
1,856 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,116 by nzsuzsanna
Tue, 2016-05-10 07:39
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
16,472 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
8,436 by rmoretti
Mon, 2016-05-09 09:23
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
3,272 by zharmad
Mon, 2014-04-21 06:47
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,286 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
4,586 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
4,552 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
3,889 by IAndre
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,695 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,943 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,637 by IAndre
Mon, 2014-04-21 06:47
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,804 by doranhen
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,228 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,881 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,568 by smlewis
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
7,762 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
5,702 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
14,668 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
0
170 by mrosam
Mon, 2022-08-08 01:37
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,467 by rmoretti
Tue, 2016-07-12 08:48
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,377 by doranhen
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,847 by rmoretti
Sat, 2018-03-17 10:43
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
2,373 by asbelx
Thu, 2018-04-26 00:23
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
7,280 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,249 by jrcf
Fri, 2015-10-16 10:57
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
505 by asbelx
Mon, 2022-06-06 23:15
Normal topic the meaning of "maxsub" in score.fsc
by exchhattu » Tue, 2009-11-10 04:37
2
3,105 by smlewis
Mon, 2014-04-21 06:47
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