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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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1,037 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
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2,896 |
by ylwang Wed, 2018-11-14 03:03 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
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3,820 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,108 |
by rmoretti Thu, 2018-03-08 07:46 |
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demo documentation by lshi » Fri, 2009-08-28 08:51 |
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2,179 |
by smlewis Mon, 2014-04-21 06:47 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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7,023 |
by smlewis Mon, 2014-04-21 06:48 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,751 |
by smlewis Mon, 2014-04-21 06:47 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
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8,387 |
by sacch Mon, 2014-04-21 06:47 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,235 |
by rmoretti Tue, 2021-02-09 10:48 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,830 |
by everyday847 Mon, 2021-03-29 20:19 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
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1,576 |
by pci112 Thu, 2021-03-25 01:44 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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8,589 |
by rmoretti Mon, 2017-08-14 09:06 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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2,606 |
by rmoretti Tue, 2019-10-22 07:05 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
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1,988 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
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981 |
by csvajda Thu, 2022-06-30 16:26 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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2,213 |
by paulbo Sun, 2024-02-04 22:03 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
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3,360 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg energy components by japgar » Tue, 2010-07-13 13:20 |
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32,973 |
by smlewis Mon, 2014-04-21 06:47 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,832 |
by dfcoelho Wed, 2019-11-20 05:39 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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5,901 |
by Lindsay Mon, 2014-04-21 06:48 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
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3,072 |
by dave Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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2,506 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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3,484 |
by ela Thu, 2018-08-09 08:04 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
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2,398 |
by ac.research Fri, 2017-03-31 07:36 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
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3,155 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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7,779 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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2,097 |
by rmoretti Mon, 2015-03-30 16:38 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
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1,061 |
by gezmi Sat, 2021-11-06 15:26 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
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2,698 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
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6,185 |
by matteoferla Sat, 2020-09-12 03:02 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,781 |
by Karol Mon, 2016-08-29 05:27 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
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4,281 |
by smlewis Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
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3,131 |
by alejandro Mon, 2014-04-21 06:47 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
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3,335 |
by franfdez Mon, 2014-04-21 06:47 |
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Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2) by skovacs » Thu, 2012-05-10 20:10 |
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17,499 |
by aaj Fri, 2016-04-22 15:20 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
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5,122 |
by smlewis Mon, 2014-04-21 06:47 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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1,081 |
by yangshen12 Fri, 2018-10-26 12:34 |
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covalent ligand docking in Rosetta by rohi » Mon, 2021-06-07 06:39 |
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11,657 |
by matteoferla Wed, 2021-07-14 04:03 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,131 |
by smlewis Mon, 2014-04-21 06:47 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,736 |
by exchhattu Mon, 2014-04-21 06:47 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,487 |
by smlewis Mon, 2014-04-21 06:47 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,933 |
by smlewis Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,696 |
by smlewis Mon, 2014-04-21 06:47 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,300 |
by matteoferla Fri, 2020-04-10 02:40 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
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4,377 |
by mdyini Mon, 2014-04-21 06:47 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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709 |
by rmoretti Wed, 2022-09-14 09:14 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
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10,788 |
by smlewis Mon, 2014-04-21 06:47 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
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4,196 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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672 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
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16,499 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,704 |
by Smbat Thu, 2020-07-30 03:07 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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1,238 |
by rmoretti Wed, 2021-01-20 07:39 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,465 |
by a.book Wed, 2018-10-03 15:56 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
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10,588 |
by rmoretti Mon, 2014-04-21 06:47 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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6,475 |
by rmoretti Thu, 2014-07-17 09:21 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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2,411 |
by lah435 Mon, 2017-04-03 19:50 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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1,426 |
by rmoretti Tue, 2021-02-09 12:02 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
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2,670 |
by rmoretti Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
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2,758 |
by smlewis Mon, 2014-04-21 06:47 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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1,710 |
by rmoretti Wed, 2018-11-21 14:14 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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944 |
by ajasja Thu, 2021-11-18 00:33 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
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5,811 |
by kbuhr Tue, 2015-07-14 04:30 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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3,055 |
by Run Mon, 2014-04-21 06:48 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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1,605 |
by rmoretti Tue, 2021-02-09 09:37 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,221 |
by rmoretti Mon, 2014-05-12 07:50 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,733 |
by pachecoj Wed, 2017-03-29 12:32 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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6,243 |
by rlwoltz Mon, 2014-04-21 06:47 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
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4,348 |
by rmoretti Mon, 2014-04-21 06:47 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,568 |
by justin Mon, 2014-04-21 06:47 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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887 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Compilation in Mac OS 10.6 by rjn » Thu, 2010-02-18 12:35 |
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2,265 |
by smlewis Mon, 2014-04-21 06:47 |
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Compilation error by zgcarvalho » Fri, 2010-02-12 06:58 |
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2,061 |
by smlewis Mon, 2014-04-21 06:47 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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5,576 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,866 |
by rmoretti Mon, 2014-04-21 06:48 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
4,643 |
by renedominik Mon, 2014-04-21 06:47 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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922 |
by Sunidhi Sun, 2020-11-01 11:01 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
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2,778 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,451 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
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4,845 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
6 |
6,362 |
by rmoretti Thu, 2016-04-28 16:15 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
4,385 |
by freedman Mon, 2017-03-06 13:24 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,543 |
by smlewis Fri, 2016-07-22 07:31 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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3,268 |
by smlewis Tue, 2014-12-23 13:58 |
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Collecting 3.2 documentation holes by smlewis » Wed, 2011-01-26 10:39 |
23 |
19,307 |
by FrankVerdin86 Mon, 2014-04-21 06:47 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
9 |
8,656 |
by rmoretti Wed, 2014-09-24 09:57 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
0 |
1,558 |
by justin Mon, 2014-04-21 06:47 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
5,720 |
by jwillis Sat, 2015-06-27 21:11 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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1,209 |
by rmoretti Tue, 2021-04-20 13:06 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
0 |
1,561 |
by ctaylor Mon, 2014-04-21 06:47 |
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clustering PDBs from docking by jbujons » Wed, 2024-04-24 08:34 |
2 |
14 |
by jbujons Wed, 2024-04-24 09:34 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
1 |
1,501 |
by brownbp1 Tue, 2021-02-09 12:12 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
916 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,454 |
by rmoretti Mon, 2014-04-21 06:48 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
5 |
5,003 |
by w107kdk Mon, 2014-04-21 06:47 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,466 |
by albumns Mon, 2014-04-21 06:47 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
7,170 |
by ritacc18 Mon, 2014-04-21 06:47 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
2 |
3,057 |
by attesor Fri, 2014-10-31 04:23 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,559 |
by rmoretti Mon, 2014-04-21 06:47 |
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Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:19 |
2 |
3,959 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
4,674 |
by smlewis Mon, 2014-04-21 06:47 |
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