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Rosetta 3 - General

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Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
3,317 by aneamtu
Thu, 2018-01-18 00:56
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,058 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
8,436 by rmoretti
Mon, 2015-02-09 09:09
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
9,115 by rmoretti
Thu, 2015-04-30 16:25
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
2,888 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
1,675 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
716 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,293 by vasek
Mon, 2014-04-21 06:48
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
2,652 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
2,664 by smlewis
Tue, 2018-06-12 10:54
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
5,228 by ac.research
Fri, 2017-08-18 00:57
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
323 by csvajda
Mon, 2022-03-07 07:46
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,081 by road runner
Tue, 2015-12-01 10:08
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,140 by allan.ferrari
Mon, 2015-09-21 21:54
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10
26
18,939 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,244 by barak
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
1,997 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,755 by smlewis
Mon, 2014-04-21 06:47
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
1,890 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
2,339 by doranhen
Mon, 2014-04-21 06:47
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,109 by Loki01
Wed, 2017-12-13 05:27
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
2,466 by aaxx
Wed, 2019-11-06 01:44
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
4,324 by byin
Mon, 2014-04-21 06:47
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
1,839 by nannemdp
Fri, 2021-02-05 06:49
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
7,457 by wangyr
Mon, 2014-04-21 06:47
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
4,925 by cossio
Thu, 2015-01-29 11:50
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
3,022 by rmoretti
Mon, 2018-03-19 12:35
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,146 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
1,606 by benhardy
Fri, 2021-05-07 07:22
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,734 by phanvy
Thu, 2014-10-16 18:54
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
4,701 by fukamitka
Mon, 2014-04-21 06:48
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
4,567 by obdulia
Wed, 2016-07-13 09:11
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
2,976 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,212 by rmoretti
Mon, 2018-02-05 15:44
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
0
498 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,393 by jrcf
Tue, 2016-05-03 17:40
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
1,277 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,507 by reddybg
Mon, 2014-04-21 06:47
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,577 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
2,340 by zdn3023
Mon, 2014-04-21 06:47
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
5,984 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
1,590 by smlewis
Mon, 2014-04-21 06:47
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
3,080 by smlewis
Mon, 2014-04-21 06:47
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
1,856 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
532 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,773 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,145 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,834 by smlewis
Mon, 2014-04-21 06:47
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
3,787 by smlewis
Tue, 2016-08-30 13:47
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
491 by taylorjones
Wed, 2021-06-09 16:30
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
3,401 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
4,701 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
2,487 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
1,828 by wlzhang
Sun, 2014-04-20 18:17
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
605 by matteoferla
Mon, 2021-08-09 01:53
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
5,253 by rosa
Mon, 2014-04-21 06:48
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
1,189 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
3,113 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
2,862 by rmoretti
Thu, 2014-04-10 07:38
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,761 by jtmacd
Mon, 2014-04-21 06:47
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,950 by SergeyP
Thu, 2016-05-05 02:07
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
6,801 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,658 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,687 by rmoretti
Fri, 2014-09-12 09:11
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,030 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
3,255 by rmoretti
Mon, 2018-08-20 11:45
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
836 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
9,839 by rmoretti
Fri, 2015-04-24 12:15
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,408 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
4,534 by sunhwan
Mon, 2017-02-27 11:02
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
3,090 by cannond
Wed, 2017-03-01 08:05
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,284 by rmoretti
Tue, 2015-08-18 17:11
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
1,976 by smlewis
Mon, 2014-04-21 06:47
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
2,673 by smlewis
Mon, 2014-04-21 06:47
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
988 by rohi
Tue, 2020-10-13 09:15
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
3,741 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,295 by smlewis
Tue, 2018-06-19 10:31
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,876 by rmoretti
Tue, 2014-07-01 12:21
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,242 by zwenthor
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,904 by smlewis
Mon, 2014-04-21 06:47
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
766 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic AddMembrane Mover Segmentation Fault
by csvajda » Thu, 2022-04-14 14:02
0
111 by csvajda
Thu, 2022-04-14 14:02
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,235 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,007 by rmoretti
Thu, 2015-04-30 16:09
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
1,098 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
1,893 by vmulligan
Thu, 2017-04-27 16:41
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
1,338 by rmoretti
Fri, 2019-03-29 14:43
Normal topic Add a ligand with only one atom (i.e. Zn) to the RosettaCM
by lanselibai » Tue, 2021-06-22 10:28
6
1,128 by rmoretti
Thu, 2021-06-24 12:23
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,127 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,319 by rmoretti
Sat, 2014-05-17 14:10
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
7,572 by rmoretti
Mon, 2014-04-21 06:48
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,736 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,892 by smlewis
Mon, 2014-04-21 06:47
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
1,953 by smlewis
Mon, 2014-04-21 06:47
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58
7
8,670 by smlewis
Mon, 2014-04-21 06:47
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,617 by anusmita_sahoo
Mon, 2014-04-21 06:47
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
19,811 by rmoretti
Wed, 2015-02-18 09:23
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
5,326 by ssrb
Tue, 2015-09-22 08:35
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,201 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,153 by smlewis
Mon, 2014-04-21 06:47
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Hot topic without new posts
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