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Rosetta 3 - General

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Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
9
5,958 by ac.research
Mon, 2018-05-14 10:20
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
6,014 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04
7
6,051 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
6,089 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
6,145 by dgront
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax under different directories without -constant_seed -jran flag
by xpzhang » Wed, 2010-09-15 14:56
6
6,164 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta3 Tutorials Beta Release
by smlewis » Fri, 2011-08-19 13:35
7
6,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
6,190 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
6,209 by Filipe
Mon, 2014-04-21 06:47
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
6,221 by rmoretti
Tue, 2015-10-27 09:11
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57
10
6,278 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
6,340 by rmoretti
Mon, 2017-08-14 09:06
Normal topic Fe3p Heme Iron Unrecognized Despite Loading Hem Params
by vsjasion » Fri, 2011-09-02 10:37
6
6,353 by tigerous
Mon, 2014-04-21 06:47
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
6,364 by mahajanr
Mon, 2014-04-21 06:47
Normal topic how to transfer the rosetta score to physical unit?
by Lindsay » Thu, 2012-06-28 09:33
7
6,370 by Lindsay
Mon, 2014-04-21 06:47
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
6,389 by rmoretti
Fri, 2015-07-03 14:02
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
7
6,415 by jurkm
Mon, 2014-04-21 06:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
6,425 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23
8
6,478 by sacch
Mon, 2014-04-21 06:47
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
6,507 by rmoretti
Thu, 2016-04-28 15:53
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
6,511 by rmoretti
Wed, 2014-09-24 09:57
Normal topic Rosetta3.3 enzyme_design errors
by jtmacd » Wed, 2012-01-25 03:33
7
6,520 by rmoretti
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
6,589 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Patches in Rosetta
by JS » Wed, 2010-03-10 13:32
6
6,600 by JS
Mon, 2014-04-21 06:47
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
9
6,619 by albumns
Mon, 2014-04-21 06:47
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
6,639 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
6,659 by albumns
Mon, 2014-04-21 06:47
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
6,694 by rmoretti
Wed, 2015-01-21 08:43
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
6,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax structure using Membrane Environment Scoring Function
by anna.duncan » Thu, 2010-02-04 08:01
6
6,710 by jruhym
Mon, 2014-04-21 06:47
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
6,769 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
6,784 by ndousis
Mon, 2014-04-21 06:47
Normal topic Resfile
by vijayaraj81 » Thu, 2014-02-27 01:14
8
6,801 by vijayaraj81
Tue, 2014-03-04 05:07
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
6,907 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
6,955 by rmoretti
Mon, 2015-06-01 15:27
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
7,056 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49
7
7,070 by moehle
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,072 by qlj
Mon, 2014-04-21 06:47
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
7,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
7,144 by attesor
Fri, 2014-10-31 04:49
Normal topic hydrophobicity patch
by Lindsay » Fri, 2012-05-04 08:24
7
7,180 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
7,184 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
7,307 by smlewis
Thu, 2016-12-22 13:11
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
7,372 by wangyr
Mon, 2014-04-21 06:47
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05
9
7,397 by arthuc01
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
7,404 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input constraints?
by violetsha7 » Wed, 2009-05-13 00:13
7
7,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
7,457 by jamsmad
Mon, 2014-04-21 06:47
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56
9
7,469 by Lindsay
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
7,497 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
7,533 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic Help with get_pdb.py for PDB file cleaning
by lzx32 » Mon, 2011-03-28 02:11
7
7,548 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
7,550 by rmoretti
Thu, 2017-02-02 08:32
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
7,556 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
7,572 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Error when renumbering PDB
by dzhao » Wed, 2012-07-18 01:03
7
7,592 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
7,605 by rmoretti
Mon, 2016-05-09 09:23
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45
10
7,806 by brspurri
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
7,808 by rmoretti
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
7,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to run Rosetta3 in parallel
by lennylv » Mon, 2009-03-30 04:21
6
7,824 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
7,974 by jtmacd
Mon, 2014-04-21 06:47
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
8,074 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
8,257 by smlewis
Mon, 2014-04-21 06:47
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
8,328 by rmoretti
Mon, 2015-02-09 09:09
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
8,347 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
8,347 by rmoretti
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
8,396 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
8,438 by weitzner
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
8,484 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
8,551 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58
7
8,566 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to deal with Cu-as a ligand or as part of the receptor?
by hanypao » Fri, 2011-09-30 18:50
7
8,581 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
8,581 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
8,628 by rmoretti
Tue, 2019-07-09 12:50
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
8,729 by jurkm
Mon, 2014-04-21 06:47
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
8,802 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
8,882 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44
9
8,909 by tianbu
Mon, 2014-02-17 03:36
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
9,005 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
9,007 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
9,017 by jurkm
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
9,017 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
9,019 by ablakely7
Wed, 2019-09-11 15:33
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
9,036 by dgront
Mon, 2014-04-21 06:47
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55
13
9,044 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy Calculation in Rosetta3.4
by sdg_lab » Thu, 2012-04-12 04:49
6
9,211 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
9,276 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
9,610 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax using multiple cores on a single machine without mpi?
by JoG » Tue, 2011-10-25 00:40
7
9,651 by smlewis
Mon, 2014-04-21 06:47
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
9,688 by rmoretti
Fri, 2015-04-24 12:15
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
9,891 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
9,995 by sabine
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
10,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
10,089 by Lindsay
Mon, 2014-04-21 06:48
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
10,119 by masterofpuppets
Tue, 2015-02-10 01:33
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24
15
10,662 by saxen
Mon, 2014-04-21 06:47
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
10,724 by rmoretti
Mon, 2014-10-06 16:50
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
10,779 by lanselibai
Tue, 2015-02-10 14:03
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
10,892 by Basantab
Mon, 2014-04-21 06:47
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