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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
5,412 by glemmon
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
5,461 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
5,467 by rosa
Mon, 2014-04-21 06:48
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
5,471 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
5,474 by zeynep
Mon, 2014-04-21 06:47
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
5,495 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
5,504 by pholland
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
5,508 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
5,527 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
5,542 by byin
Mon, 2014-04-21 06:47
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
5,572 by cannond
Wed, 2017-03-08 03:00
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
5,574 by smlewis
Mon, 2014-04-21 06:47
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
5,607 by rmoretti
Sat, 2014-05-17 14:10
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
5,607 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
5,615 by albumns
Mon, 2014-04-21 06:47
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
5,619 by rmoretti
Tue, 2015-05-05 14:31
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,627 by yuvals
Sat, 2014-06-21 02:17
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
5,637 by weallen
Mon, 2014-04-21 06:47
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
5,648 by smlewis
Mon, 2014-04-21 06:47
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
5,654 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
5,685 by Karol
Thu, 2016-12-15 01:35
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
5,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
5,690 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
5,693 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
5,706 by aroop
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
5,707 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
5,707 by smlewis
Mon, 2014-04-21 06:47
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
5,712 by smlewis
Mon, 2014-04-21 06:47
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
5,714 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
5,738 by phanvy
Wed, 2014-10-08 01:42
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
5,740 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
5,766 by jwillis
Sat, 2015-06-27 21:11
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
5,794 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
5,814 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
5,848 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
5,857 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
5,871 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
5,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
5,931 by linucks
Wed, 2018-04-25 08:50
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
5,943 by ac.research
Mon, 2020-02-10 08:19
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
5,971 by jarod
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
5,976 by Lindsay
Mon, 2014-04-21 06:48
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
5,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
5,987 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
5,990 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta 3.1-how to run parallel tasks?
by wtscrystal » Fri, 2009-11-06 03:23
4
6,008 by lqzhang
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
6,010 by MRH
Mon, 2014-04-21 06:48
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
6,033 by einew
Mon, 2014-04-21 06:47
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
6,055 by doranhen
Mon, 2014-04-21 06:47
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
6,068 by rmoretti
Tue, 2015-11-10 11:52
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
6,068 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
6,073 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
6,077 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
6,090 by rmoretti
Tue, 2021-02-09 11:52
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
6,132 by cossio
Thu, 2015-01-29 11:50
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
6,137 by rmoretti
Mon, 2014-04-21 06:48
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
6,139 by Anonymous
Mon, 2014-04-21 06:47
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
6,178 by fukamitka
Mon, 2014-04-21 06:48
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
6,179 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
6,188 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
6,193 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
6,209 by obdulia
Wed, 2016-07-13 09:11
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
6,212 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
6,213 by tevang
Mon, 2014-04-21 06:47
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
6,232 by sunhwan
Mon, 2017-02-27 11:02
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
6,279 by robren
Mon, 2014-04-21 06:47
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
6,287 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
6,289 by rmoretti
Tue, 2014-07-01 12:45
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
6,301 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
6,310 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
6,321 by matteoferla
Sat, 2020-09-12 03:02
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01
6
6,323 by jurkm
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
6,324 by Apiwat
Sat, 2014-02-08 01:41
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
6,328 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
6,368 by smlewis
Mon, 2014-04-21 06:47
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
6,440 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
6,448 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
6,450 by rmoretti
Thu, 2016-04-28 16:15
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40
7
6,451 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
6,481 by smlewis
Mon, 2014-04-21 06:47
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
6,482 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
6,506 by kwak
Mon, 2014-04-21 06:47
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
6,518 by rmoretti
Thu, 2015-04-16 10:09
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
6,525 by rmoretti
Fri, 2014-03-28 09:03
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
6,526 by smlewis
Mon, 2014-04-21 06:47
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
6,531 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
6,540 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
6,545 by rmoretti
Thu, 2014-07-17 09:21
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
6,546 by smlewis
Sun, 2017-01-15 18:14
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
6,552 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
6,563 by rosend
Fri, 2015-12-18 19:39
Normal topic how to cluster loop?
by albumns » Wed, 2011-01-05 19:48
6
6,579 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
6,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic General Protein Folding Question
by twopint23oz » Sun, 2012-04-01 22:57
7
6,603 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
6,657 by krdav
Wed, 2016-08-17 12:57
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
6,669 by qlj
Mon, 2014-04-21 06:47
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
6,676 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Problem with clustering 1000 centroid pdbs
by doranhen » Sat, 2012-04-28 10:34
6
6,707 by doranhen
Mon, 2014-04-21 06:47
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
6,728 by einew
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
6,763 by einew
Mon, 2014-04-21 06:47
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