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Rosetta 3 - General
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,178 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
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5,211 |
by smlewis Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,211 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
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5,217 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,223 |
by MRH Mon, 2014-04-21 06:48 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
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5,239 |
by sunhwan Mon, 2017-02-27 11:02 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
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5,260 |
by lqzhang Mon, 2014-04-21 06:47 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
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5,261 |
by jwillis Sat, 2015-06-27 21:11 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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5,266 |
by obdulia Wed, 2016-07-13 09:11 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
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5,266 |
by Apiwat Sat, 2014-02-08 01:41 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
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5,272 |
by arthuc01 Mon, 2014-04-21 06:47 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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5,276 |
by yuvals Sat, 2014-06-21 02:17 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,289 |
by jadolfbr Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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5,300 |
by rmoretti Mon, 2014-04-21 06:48 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
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5,301 |
by fukamitka Mon, 2014-04-21 06:48 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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5,305 |
by smlewis Mon, 2014-04-21 06:47 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
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5,307 |
by kbuhr Tue, 2015-07-14 04:30 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,337 |
by doranhen Mon, 2014-04-21 06:47 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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5,347 |
by rmoretti Tue, 2015-11-10 11:52 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
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5,347 |
by smlewis Mon, 2014-04-21 06:47 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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5,349 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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5,359 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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5,365 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
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5,390 |
by smlewis Mon, 2014-04-21 06:47 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
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5,398 |
by syoifczeri Mon, 2015-11-02 03:59 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,404 |
by einew Mon, 2014-04-21 06:47 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
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5,436 |
by cossio Thu, 2015-01-29 11:50 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
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5,437 |
by tevang Mon, 2014-04-21 06:47 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
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5,443 |
by smlewis Sun, 2017-01-15 18:14 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
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5,460 |
by smlewis Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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5,511 |
by rlwoltz Mon, 2014-04-21 06:47 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
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5,528 |
by robren Mon, 2014-04-21 06:47 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
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5,529 |
by Anonymous Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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5,542 |
by rmoretti Fri, 2014-03-28 09:03 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
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5,543 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
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5,593 |
by jurkm Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
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5,617 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
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5,627 |
by rmoretti Thu, 2016-04-28 16:15 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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5,638 |
by rmoretti Thu, 2015-04-16 10:09 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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5,640 |
by lanselibai Fri, 2014-12-12 10:27 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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5,677 |
by krdav Wed, 2016-08-17 12:57 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
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5,692 |
by rosend Fri, 2015-12-18 19:39 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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5,700 |
by rmoretti Tue, 2014-07-01 12:45 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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5,723 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
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5,748 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
8 |
5,765 |
by jtmacd Mon, 2014-04-21 06:47 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
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5,772 |
by kwak Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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5,787 |
by smlewis Mon, 2014-04-21 06:47 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
5,788 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
6 |
5,807 |
by smlewis Mon, 2014-04-21 06:47 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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5,827 |
by shadrinams Mon, 2018-02-12 11:47 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
5,843 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
4 |
5,846 |
by Lindsay Mon, 2014-04-21 06:47 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
5,853 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
5,857 |
by smlewis Mon, 2014-04-21 06:47 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
5,875 |
by G Mustafa Fri, 2021-09-10 01:16 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
5,888 |
by einew Mon, 2014-04-21 06:47 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
5,900 |
by rosa Mon, 2014-04-21 06:48 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
7 |
5,907 |
by rmoretti Thu, 2016-02-04 09:29 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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5,926 |
by ssrb Tue, 2015-09-22 08:35 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,928 |
by smlewis Mon, 2014-04-21 06:47 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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5,943 |
by qlj Mon, 2014-04-21 06:47 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
5,964 |
by rmoretti Thu, 2014-07-17 09:21 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
5,982 |
by rmoretti Mon, 2014-11-03 16:39 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,007 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
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6,032 |
by doranhen Mon, 2014-04-21 06:47 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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6,034 |
by smlewis Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
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6,045 |
by smlewis Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,076 |
by einew Mon, 2014-04-21 06:47 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
6 |
6,104 |
by smlewis Mon, 2014-04-21 06:47 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
11 |
6,135 |
by rohi Sun, 2020-07-26 17:03 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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6,150 |
by smlewis Mon, 2014-04-21 06:48 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
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6,169 |
by smlewis Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
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6,178 |
by smlewis Mon, 2014-04-21 06:47 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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6,183 |
by vmulligan Thu, 2020-07-16 23:31 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
6,236 |
by ac.research Fri, 2017-08-18 00:57 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
7 |
6,253 |
by Anonymous Mon, 2014-04-21 06:47 |
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rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
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6,307 |
by exchhattu Mon, 2014-04-21 06:47 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
6,329 |
by sk0319 Wed, 2017-01-11 10:52 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
6,348 |
by rmoretti Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
2 |
6,360 |
by lanselibai Mon, 2014-09-22 08:13 |
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Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
7 |
6,450 |
by JuliusSu Wed, 2014-03-19 20:38 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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6,463 |
by smlewis Mon, 2014-04-21 06:47 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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6,466 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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6,479 |
by ritacc18 Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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6,505 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
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6,570 |
by smlewis Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
6,651 |
by rmoretti Mon, 2014-04-21 06:48 |
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building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
8 |
6,679 |
by gsmurphy Mon, 2014-04-21 06:47 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
6,714 |
by smlewis Tue, 2018-06-19 09:28 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
6,720 |
by Filipe Mon, 2014-04-21 06:47 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
6,741 |
by rmoretti Mon, 2014-04-21 06:48 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
6,766 |
by dgront Mon, 2014-04-21 06:47 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
6 |
6,886 |
by rmoretti Mon, 2014-04-21 06:47 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
6,892 |
by jrcf Wed, 2016-03-23 12:16 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
6 |
6,935 |
by tigerous Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
6,937 |
by rmoretti Tue, 2019-07-09 10:29 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
7 |
6,942 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
7 |
6,947 |
by smlewis Mon, 2014-04-21 06:47 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
6,986 |
by rlwoltz Mon, 2014-04-21 06:47 |
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