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Rosetta 3 - General
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Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
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5,958 |
by ac.research Mon, 2018-05-14 10:20 |
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ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
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6,014 |
by brandon.frenz Thu, 2018-03-08 09:28 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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6,051 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
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6,089 |
by rmoretti Tue, 2019-07-09 10:29 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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6,145 |
by dgront Mon, 2014-04-21 06:47 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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6,164 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
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6,170 |
by smlewis Mon, 2014-04-21 06:47 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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6,190 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
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6,209 |
by Filipe Mon, 2014-04-21 06:47 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
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6,221 |
by rmoretti Tue, 2015-10-27 09:11 |
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Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
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6,278 |
by jiongzhang Mon, 2014-04-21 06:47 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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6,340 |
by rmoretti Mon, 2017-08-14 09:06 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
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6,353 |
by tigerous Mon, 2014-04-21 06:47 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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6,364 |
by mahajanr Mon, 2014-04-21 06:47 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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6,370 |
by Lindsay Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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6,389 |
by rmoretti Fri, 2015-07-03 14:02 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
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6,415 |
by jurkm Mon, 2014-04-21 06:47 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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6,425 |
by rmoretti Mon, 2014-11-03 16:30 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
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6,478 |
by sacch Mon, 2014-04-21 06:47 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
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6,507 |
by rmoretti Thu, 2016-04-28 15:53 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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6,511 |
by rmoretti Wed, 2014-09-24 09:57 |
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Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
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6,520 |
by rmoretti Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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6,589 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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6,600 |
by JS Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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6,619 |
by albumns Mon, 2014-04-21 06:47 |
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B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
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6,639 |
by brandon.frenz Sat, 2017-07-08 13:49 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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6,659 |
by albumns Mon, 2014-04-21 06:47 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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6,694 |
by rmoretti Wed, 2015-01-21 08:43 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
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6,698 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
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6,710 |
by jruhym Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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6,769 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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6,784 |
by ndousis Mon, 2014-04-21 06:47 |
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Resfile by vijayaraj81 » Thu, 2014-02-27 01:14 |
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6,801 |
by vijayaraj81 Tue, 2014-03-04 05:07 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
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6,907 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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6,955 |
by rmoretti Mon, 2015-06-01 15:27 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
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7,056 |
by smlewis Mon, 2014-04-21 06:47 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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7,070 |
by moehle Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
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7,072 |
by qlj Mon, 2014-04-21 06:47 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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7,083 |
by smlewis Mon, 2014-04-21 06:47 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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7,144 |
by attesor Fri, 2014-10-31 04:49 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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7,180 |
by Lindsay Mon, 2014-04-21 06:47 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
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7,184 |
by rmoretti Mon, 2014-04-21 06:47 |
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Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
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7,307 |
by smlewis Thu, 2016-12-22 13:11 |
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Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
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7,372 |
by wangyr Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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7,397 |
by arthuc01 Mon, 2014-04-21 06:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
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7,404 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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7,453 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
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7,457 |
by jamsmad Mon, 2014-04-21 06:47 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
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7,469 |
by Lindsay Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
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7,497 |
by rmoretti Mon, 2014-04-21 06:48 |
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Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
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7,533 |
by rfieldhouse Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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7,548 |
by smlewis Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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7,550 |
by rmoretti Thu, 2017-02-02 08:32 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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7,556 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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7,572 |
by xpzhang Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
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7,592 |
by rmoretti Mon, 2014-04-21 06:47 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
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7,605 |
by rmoretti Mon, 2016-05-09 09:23 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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7,806 |
by brspurri Mon, 2014-04-21 06:47 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
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7,808 |
by rmoretti Mon, 2014-04-21 06:47 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
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7,812 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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7,824 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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7,974 |
by jtmacd Mon, 2014-04-21 06:47 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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8,074 |
by rmoretti Mon, 2014-04-21 06:48 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
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8,257 |
by smlewis Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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8,328 |
by rmoretti Mon, 2015-02-09 09:09 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
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8,347 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
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8,347 |
by rmoretti Mon, 2014-04-21 06:47 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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8,396 |
by jadolfbr Wed, 2014-11-26 11:40 |
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-dock_pert problem by mahajanr » Mon, 2010-07-19 15:45 |
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8,438 |
by weitzner Mon, 2014-04-21 06:47 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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8,484 |
by lanselibai Wed, 2014-10-15 01:41 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
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8,551 |
by G Mustafa Fri, 2021-09-10 08:20 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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8,566 |
by smlewis Mon, 2014-04-21 06:47 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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8,581 |
by rmoretti Mon, 2014-04-21 06:47 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
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8,581 |
by jadolfbr Mon, 2014-04-21 06:47 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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8,628 |
by rmoretti Tue, 2019-07-09 12:50 |
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Modeling of a Multi-Domain Dimer by jurkm » Mon, 2011-08-29 01:39 |
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8,729 |
by jurkm Mon, 2014-04-21 06:47 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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8,802 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
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8,882 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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8,909 |
by tianbu Mon, 2014-02-17 03:36 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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9,005 |
by rmoretti Thu, 2015-04-30 16:25 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
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9,007 |
by Anonymous Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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9,017 |
by jurkm Mon, 2014-04-21 06:47 |
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Modeling circular permutation and domain insertion by bharat_46010 » Sun, 2011-04-10 19:54 |
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9,017 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
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9,019 |
by ablakely7 Wed, 2019-09-11 15:33 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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9,036 |
by dgront Mon, 2014-04-21 06:47 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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9,044 |
by rmoretti Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
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9,211 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
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9,276 |
by gsmurphy Mon, 2014-04-21 06:47 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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9,610 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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9,651 |
by smlewis Mon, 2014-04-21 06:47 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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9,688 |
by rmoretti Fri, 2015-04-24 12:15 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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9,891 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
13 |
9,995 |
by sabine Mon, 2014-04-21 06:47 |
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Rosetta 3.1 compile error, Linux 32 bit by viochemist » Thu, 2010-07-29 08:40 |
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10,005 |
by smlewis Mon, 2014-04-21 06:47 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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10,089 |
by Lindsay Mon, 2014-04-21 06:48 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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10,119 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
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10,662 |
by saxen Mon, 2014-04-21 06:47 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
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10,724 |
by rmoretti Mon, 2014-10-06 16:50 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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10,779 |
by lanselibai Tue, 2015-02-10 14:03 |
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Ligand Docking Positive Control: wt ligand by Basantab » Thu, 2011-10-27 13:36 |
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10,892 |
by Basantab Mon, 2014-04-21 06:47 |
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