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Rosetta 3 - General
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
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5,443 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
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5,462 |
by byin Mon, 2014-04-21 06:47 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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5,470 |
by cannond Wed, 2017-03-08 03:00 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
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5,490 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
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5,520 |
by smlewis Mon, 2014-04-21 06:47 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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5,527 |
by rmoretti Tue, 2015-05-05 14:31 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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5,531 |
by rmoretti Sat, 2014-05-17 14:10 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
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5,535 |
by albumns Mon, 2014-04-21 06:47 |
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Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
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5,537 |
by weallen Mon, 2014-04-21 06:47 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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5,567 |
by smlewis Mon, 2014-04-21 06:47 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
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5,571 |
by rmoretti Mon, 2014-04-21 06:47 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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5,589 |
by yuvals Sat, 2014-06-21 02:17 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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5,600 |
by Karol Thu, 2016-12-15 01:35 |
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Linker problems when building mini by assaff » Mon, 2009-10-12 01:07 |
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5,605 |
by smlewis Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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5,609 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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5,615 |
by rmoretti Mon, 2014-04-21 06:48 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
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5,619 |
by aroop Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
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5,625 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
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5,635 |
by smlewis Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,638 |
by code_Monkey Thu, 2021-03-18 08:03 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
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5,645 |
by rmoretti Mon, 2014-04-21 06:47 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
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5,667 |
by biofisikx Mon, 2014-04-21 06:47 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
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5,675 |
by phanvy Wed, 2014-10-08 01:42 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
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5,715 |
by jwillis Sat, 2015-06-27 21:11 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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5,724 |
by rmoretti Sat, 2015-04-25 10:05 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
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5,732 |
by Anonymous Mon, 2014-04-21 06:47 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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5,735 |
by rmoretti Thu, 2016-04-28 15:19 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
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5,785 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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5,797 |
by ac.research Mon, 2020-02-10 08:19 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
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5,800 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
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5,805 |
by kbuhr Tue, 2015-07-14 04:30 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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5,819 |
by linucks Wed, 2018-04-25 08:50 |
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modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
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5,872 |
by jarod Mon, 2014-04-21 06:47 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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5,896 |
by Lindsay Mon, 2014-04-21 06:48 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,910 |
by jadolfbr Mon, 2014-04-21 07:30 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,916 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
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5,927 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
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5,940 |
by lqzhang Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,941 |
by MRH Mon, 2014-04-21 06:48 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,942 |
by einew Mon, 2014-04-21 06:47 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,980 |
by doranhen Mon, 2014-04-21 06:47 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,987 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
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5,992 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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5,998 |
by rmoretti Tue, 2021-02-09 11:52 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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6,001 |
by smlewis Mon, 2014-04-21 06:47 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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6,007 |
by rmoretti Tue, 2015-11-10 11:52 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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6,049 |
by Anonymous Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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6,058 |
by rmoretti Mon, 2014-04-21 06:48 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
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6,063 |
by cossio Thu, 2015-01-29 11:50 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
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6,097 |
by fukamitka Mon, 2014-04-21 06:48 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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6,097 |
by obdulia Wed, 2016-07-13 09:11 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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6,115 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
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6,122 |
by syoifczeri Mon, 2015-11-02 03:59 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
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6,130 |
by tevang Mon, 2014-04-21 06:47 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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6,132 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
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6,145 |
by sunhwan Mon, 2017-02-27 11:02 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
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6,148 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
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6,160 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
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6,166 |
by matteoferla Sat, 2020-09-12 03:02 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
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6,195 |
by robren Mon, 2014-04-21 06:47 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
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6,198 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
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6,198 |
by Apiwat Sat, 2014-02-08 01:41 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
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6,221 |
by Anonymous Mon, 2014-04-21 06:47 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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6,233 |
by rmoretti Tue, 2014-07-01 12:45 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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6,235 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
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6,248 |
by jurkm Mon, 2014-04-21 06:47 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
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6,279 |
by smlewis Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
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6,344 |
by rmoretti Mon, 2014-04-21 06:47 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
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6,360 |
by rmoretti Thu, 2016-04-28 16:15 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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6,378 |
by lanselibai Fri, 2014-12-12 10:27 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
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6,383 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
6,388 |
by smlewis Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
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6,416 |
by Lindsay Mon, 2014-04-21 06:47 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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6,418 |
by rmoretti Thu, 2015-04-16 10:09 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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6,431 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
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6,438 |
by kwak Mon, 2014-04-21 06:47 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
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6,443 |
by smlewis Sun, 2017-01-15 18:14 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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6,444 |
by rmoretti Fri, 2014-03-28 09:03 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
6,451 |
by smlewis Mon, 2014-04-21 06:47 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,455 |
by rmoretti Mon, 2014-04-21 06:47 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,465 |
by rosend Fri, 2015-12-18 19:39 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
6,467 |
by rmoretti Thu, 2014-07-17 09:21 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
6 |
6,490 |
by smlewis Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
3 |
6,504 |
by rmoretti Mon, 2014-11-03 16:39 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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6,514 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
6,532 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
7 |
6,561 |
by krdav Wed, 2016-08-17 12:57 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
8 |
6,581 |
by jtmacd Mon, 2014-04-21 06:47 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
6,588 |
by qlj Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
6 |
6,625 |
by doranhen Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
6,630 |
by einew Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,687 |
by einew Mon, 2014-04-21 06:47 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
6,690 |
by smlewis Mon, 2014-04-21 06:47 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
6,703 |
by rmoretti Mon, 2014-04-21 06:48 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
5 |
6,704 |
by ssrb Tue, 2015-09-22 08:35 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
6 |
6,709 |
by smlewis Mon, 2014-04-21 06:47 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
6,748 |
by rosa Mon, 2014-04-21 06:48 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
6,769 |
by G Mustafa Fri, 2021-09-10 01:16 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
7 |
6,795 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
6 |
6,829 |
by smlewis Mon, 2014-04-21 06:47 |
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