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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,503 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,407 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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657 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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190 |
by liuwenxi Tue, 2022-08-09 08:33 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,568 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,044 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,227 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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694 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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387 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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192 |
by SebastianBB Mon, 2022-11-21 08:33 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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888 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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880 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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207 |
by ialvy Tue, 2022-08-30 00:00 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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421 |
by hanzhiz Thu, 2021-12-16 09:18 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,398 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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797 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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180 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,323 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,100 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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845 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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251 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,528 |
by w107kdk Mon, 2014-04-21 06:47 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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758 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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189 |
by He Xiao Mon, 2022-11-07 04:10 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,671 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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1,491 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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671 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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218 |
by mb0261 Thu, 2022-06-30 10:48 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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553 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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3,954 |
by xujc Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,889 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,317 |
by justin Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,343 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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510 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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227 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,260 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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563 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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288 |
by rlwoltz Fri, 2022-04-29 15:15 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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448 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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254 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,157 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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511 |
by rohi Fri, 2021-06-25 10:29 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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175 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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749 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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668 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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504 |
by Soler Sat, 2021-11-20 23:41 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
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1,776 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
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1,403 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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482 |
by Soler Sat, 2022-01-15 22:09 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,364 |
by justin Mon, 2014-04-21 06:47 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,133 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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751 |
by yinasun Fri, 2019-07-26 02:17 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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689 |
by haom Tue, 2020-09-01 18:50 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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725 |
by rlwoltz Tue, 2021-08-03 23:26 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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179 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,418 |
by abhishek Mon, 2014-04-21 06:47 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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661 |
by pci112 Mon, 2021-04-12 08:12 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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244 |
by aastha.pal Mon, 2022-06-27 09:34 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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184 |
by almeida85 Thu, 2022-11-17 01:04 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,303 |
by lanselibai Sun, 2014-11-16 10:44 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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919 |
by rlwoltz Mon, 2019-03-11 18:32 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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1,017 |
by hajar Wed, 2020-06-10 11:17 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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232 |
by Karthik Wed, 2022-07-13 23:45 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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629 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,322 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,714 |
by Trentage Mon, 2014-04-21 06:47 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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637 |
by jeanramos Mon, 2020-07-13 00:56 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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691 |
by rohi Mon, 2021-03-15 06:31 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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283 |
by mgupta Fri, 2022-12-09 01:03 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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447 |
by tisozaki Tue, 2021-12-14 17:16 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,339 |
by IgaK Mon, 2014-04-21 06:47 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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824 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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672 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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695 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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915 |
by zhoubin Fri, 2019-01-04 13:14 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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773 |
by Kazu Wed, 2020-05-20 11:58 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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738 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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1,279 |
by hltorresvera Tue, 2021-02-09 10:44 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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119 |
by JasonIsaac Wed, 2023-02-22 18:36 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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706 |
by kalabharath Mon, 2020-06-29 06:59 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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509 |
by CameronJA Mon, 2021-06-14 16:12 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,436 |
by DanielK Mon, 2014-04-21 06:47 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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903 |
by bio_james Wed, 2017-12-13 09:13 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
890 |
by bazzoli Wed, 2018-10-10 01:59 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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284 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
860 |
by BioPython Sun, 2019-05-12 20:07 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
0 |
599 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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405 |
by tlopes Wed, 2022-01-05 18:19 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,379 |
by tevang Mon, 2014-04-21 06:47 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
881 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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638 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
0 |
300 |
by guowuchen Thu, 2022-06-23 04:43 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,310 |
by exchhattu Mon, 2014-04-21 06:47 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
1,012 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
959 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
854 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
822 |
by Anpu Thu, 2018-09-27 23:36 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
0 |
265 |
by Hyun Tue, 2022-03-29 19:53 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
867 |
by yangshen12 Fri, 2018-10-26 12:34 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
0 |
248 |
by mb0261 Tue, 2022-12-06 10:16 |
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