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Rosetta 3 - General

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Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
889 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
851 by Corvin
Wed, 2021-05-19 07:54
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,701 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,602 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
870 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
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499 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
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203 by Eden
Sat, 2023-11-18 02:39
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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2,777 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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1,324 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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1,438 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
897 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
788 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
505 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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1,084 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
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1,092 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
0
516 by ialvy
Tue, 2022-08-30 00:00
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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1,520 by gobli033
Mon, 2014-04-21 06:47
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
1,604 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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1,448 by albumns
Mon, 2014-04-21 06:47
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
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1,043 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
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496 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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1,548 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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2,563 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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1,308 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
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1,184 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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482 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
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364 by almeida85
Thu, 2023-05-25 06:18
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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648 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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1,735 by w107kdk
Mon, 2014-04-21 06:47
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
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995 by haom
Wed, 2020-09-09 09:19
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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507 by He Xiao
Mon, 2022-11-07 04:10
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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1,525 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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1,991 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
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883 by ate
Sat, 2021-05-01 02:22
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
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482 by mb0261
Thu, 2022-06-30 10:48
Normal topic Generating Params File for water molecule
by Ahmed Raslan » Thu, 2023-08-17 13:13
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499 by Ahmed Raslan
Thu, 2023-08-17 13:13
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
4,205 by xujc
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
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1,585 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
2,072 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
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760 by dkesar
Fri, 2021-06-04 19:09
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,537 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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715 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
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554 by csvajda
Sat, 2022-08-13 08:08
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,446 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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812 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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560 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
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330 by chenna
Sun, 2023-04-23 23:52
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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657 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
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542 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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1,381 by jferrie
Mon, 2018-04-23 15:25
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
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739 by rohi
Fri, 2021-06-25 10:29
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
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504 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic JD3 FastRelax over MPI - crashes on relax completion/before writing output
by aduffy33 » Tue, 2024-03-12 12:51
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104 by aduffy33
Tue, 2024-03-12 12:52
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
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943 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
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904 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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720 by Soler
Sat, 2021-11-20 23:41
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,985 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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704 by Soler
Sat, 2022-01-15 22:09
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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1,546 by justin
Mon, 2014-04-21 06:47
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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1,352 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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970 by yinasun
Fri, 2019-07-26 02:17
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
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898 by haom
Tue, 2020-09-01 18:50
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
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1,031 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
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490 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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1,635 by abhishek
Mon, 2014-04-21 06:47
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
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903 by pci112
Mon, 2021-04-12 08:12
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
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494 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic GALigandDock errors
by Delfosse57 » Mon, 2023-08-07 13:16
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428 by Delfosse57
Mon, 2023-08-07 13:16
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,621 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
0
516 by almeida85
Thu, 2022-11-17 01:04
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
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1,526 by lanselibai
Sun, 2014-11-16 10:44
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
1,163 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
1,308 by hajar
Wed, 2020-06-10 11:17
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
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514 by Karthik
Wed, 2022-07-13 23:45
Normal topic Problem with sugar parameters
by Martin Floor » Sat, 2023-10-07 10:17
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429 by Martin Floor
Sat, 2023-10-07 10:17
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
835 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Methodology Feedback with As(III) and Pb(II) Binding
by rnogy » Mon, 2023-11-06 17:05
0
217 by rnogy
Mon, 2023-11-06 17:06
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,544 by justin
Mon, 2014-04-21 06:47
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
816 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
0
942 by rohi
Mon, 2021-03-15 06:31
Normal topic How many rifdock can I run at a time on a 64 CPUs and 512GB memory server?
by JasonIsaac » Tue, 2023-05-02 03:39
0
336 by JasonIsaac
Tue, 2023-05-02 03:39
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
0
611 by mgupta
Fri, 2022-12-09 01:03
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
1,023 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
869 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
934 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
0
322 by mrosam
Thu, 2023-05-25 05:14
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
0
717 by tisozaki
Tue, 2021-12-14 17:16
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,542 by IgaK
Mon, 2014-04-21 06:47
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
1,165 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
990 by Kazu
Wed, 2020-05-20 11:58
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
0
466 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
940 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,507 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
938 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
720 by CameronJA
Mon, 2021-06-14 16:12
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,913 by Trentage
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,611 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
0
1,134 by bio_james
Wed, 2017-12-13 09:13
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
0
1,109 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
523 by tonycheng1688
Mon, 2022-04-25 13:51
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