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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort descending
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04
2
1,887 by matteoferla
Thu, 2021-10-07 09:31
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
0
640 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
993 by gezmi
Sat, 2021-11-06 15:26
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
885 by ajasja
Thu, 2021-11-18 00:33
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
640 by lsong2
Thu, 2021-11-18 10:31
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
701 by Soler
Sat, 2021-11-20 23:41
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
1,259 by hong wei
Thu, 2021-11-25 02:46
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
1,502 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
1,011 by rmoretti
Tue, 2021-11-30 07:41
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
1,019 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
0
698 by tisozaki
Tue, 2021-12-14 17:16
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
629 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
654 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
0
600 by tlopes
Wed, 2022-01-05 18:19
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
1,726 by matteoferla
Mon, 2022-01-10 06:44
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
0
689 by Soler
Sat, 2022-01-15 22:09
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
2
2,298 by CameronJA
Wed, 2022-01-19 20:50
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
2,760 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
910 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic I_sc
by Soler » Sat, 2022-02-12 00:16
1
1,015 by rmoretti
Fri, 2022-02-18 11:14
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
846 by vmulligan
Thu, 2022-03-03 18:48
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
1,513 by csvajda
Mon, 2022-03-07 07:46
Normal topic Rosetta (antibody_designer) performance
by Kihang _Youn » Wed, 2022-03-02 00:48
7
2,344 by Kihang _Youn
Thu, 2022-03-10 16:30
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
1,068 by LanMei
Tue, 2022-03-22 20:45
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
1,059 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
488 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
465 by Hyun
Tue, 2022-03-29 19:53
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
1,672 by guowuchen
Wed, 2022-03-30 04:20
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
1,136 by rjacak
Thu, 2022-03-31 10:53
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,637 by rmoretti
Thu, 2022-04-07 07:51
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
758 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,501 by protein_fan
Fri, 2022-04-15 17:41
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
505 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
0
533 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
1,173 by e3lm
Fri, 2022-05-06 16:10
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
720 by ajasja
Mon, 2022-05-23 07:19
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
2
966 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
842 by matteoferla
Fri, 2022-06-03 01:09
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
1,043 by asbelx
Mon, 2022-06-06 23:15
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
893 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
656 by matteoferla
Thu, 2022-06-09 14:41
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
461 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
689 by matteoferla
Fri, 2022-06-17 10:38
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
2
893 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
634 by guowuchen
Thu, 2022-06-23 04:43
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
0
476 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
5
1,956 by aastha.pal
Mon, 2022-06-27 09:55
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
751 by rmoretti
Tue, 2022-06-28 11:06
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
0
461 by mb0261
Thu, 2022-06-30 10:48
Normal topic De Novo backbone generation vs Rosetta Match for enzdes and ligand binding.
by csvajda » Thu, 2022-06-30 09:55
2
903 by csvajda
Thu, 2022-06-30 16:26
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
950 by jgustat
Fri, 2022-07-01 13:26
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
5
1,898 by matteoferla
Fri, 2022-07-01 13:49
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
1,140 by sia
Tue, 2022-07-05 05:47
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
1,457 by ssrb
Tue, 2022-07-05 11:07
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
491 by Karthik
Wed, 2022-07-13 23:45
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
1,132 by rmoretti
Mon, 2022-07-18 11:56
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
794 by matteoferla
Wed, 2022-07-20 10:33
Normal topic Renumbering PDB
by jgustat » Wed, 2022-07-27 13:37
2
895 by jgustat
Thu, 2022-07-28 10:00
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
0
444 by mrosam
Mon, 2022-08-08 01:37
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
909 by rmoretti
Tue, 2022-08-09 06:52
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
0
480 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic Interface scores comparison
by NingNing » Tue, 2022-08-09 17:36
0
459 by NingNing
Tue, 2022-08-09 17:36
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,340 by almeida85
Thu, 2022-08-11 00:29
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
2
987 by almeida85
Thu, 2022-08-11 00:32
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
663 by almeida85
Fri, 2022-08-12 05:56
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
536 by csvajda
Sat, 2022-08-13 08:08
Normal topic GeneralizedKIC disulfide closure
by Ken » Tue, 2022-08-16 13:32
2
949 by Ken
Wed, 2022-08-17 08:04
Normal topic Using specific rotamers
by sahn97 » Fri, 2022-08-26 13:45
1
691 by rmoretti
Fri, 2022-08-26 14:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
0
485 by ialvy
Tue, 2022-08-30 00:00
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
1
842 by aneeqh
Fri, 2022-09-02 13:36
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
760 by rmoretti
Tue, 2022-09-06 08:13
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
676 by rmoretti
Tue, 2022-09-06 08:22
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
649 by rmoretti
Wed, 2022-09-07 09:19
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
0
467 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
1
727 by rmoretti
Mon, 2022-09-12 06:58
Normal topic Residue outside res_map range
by to-qinbin@163.com » Sat, 2022-09-10 01:56
1
1,015 by rmoretti
Mon, 2022-09-12 07:01
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
622 by rmoretti
Wed, 2022-09-14 09:14
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
0
462 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic GeneralizedKIC side chain closure.
by almeida85 » Mon, 2022-09-19 06:13
0
528 by almeida85
Mon, 2022-09-19 07:22
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
1,000 by mb0261
Mon, 2022-09-26 07:50
Normal topic Save silent results to individual directory by process ID
by Payne » Sat, 2022-09-24 05:23
3
983 by rmoretti
Thu, 2022-09-29 00:15
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
463 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
0
467 by biotech
Wed, 2022-10-26 11:17
Normal topic total_score changes when decomposing bb hbonds ref2015
by Liviu Copoiu » Mon, 2022-10-31 15:40
2
770 by Liviu Copoiu
Mon, 2022-10-31 16:03
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
0
483 by He Xiao
Mon, 2022-11-07 04:10
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
4
1,368 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
2
822 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Where is Sicdock application now? Can I find a substitute?
by JasonIsaac » Sun, 2022-11-13 03:41
3
952 by rmoretti
Mon, 2022-11-14 07:27
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
0
489 by almeida85
Thu, 2022-11-17 01:04
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
480 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Loop modeling
by Robertofg » Tue, 2022-11-22 00:34
0
520 by Robertofg
Tue, 2022-11-22 00:34
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
0
519 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
1
761 by JasonIsaac
Mon, 2022-12-05 18:41
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
0
526 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic Prepacking crashing using metalloprotein
by mb0261 » Tue, 2022-12-06 10:16
0
531 by mb0261
Tue, 2022-12-06 10:16
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
0
590 by mgupta
Fri, 2022-12-09 01:03
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
828 by brubin
Tue, 2022-12-20 13:26
Normal topic undefined symbol: ZN9CifString12UnknownValueE error meaning?
by aniyaz » Wed, 2023-01-04 08:37
3
1,111 by aniyaz
Wed, 2023-01-11 01:24
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
572 by JW_24
Tue, 2023-01-24 04:55
Normal topic Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'?
by JW_24 » Tue, 2023-01-24 04:40
2
706 by JW_24
Tue, 2023-01-24 14:52
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