You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
2 |
1,842 |
by htorres Mon, 2018-02-05 06:53 |
|
|
Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
6 |
6,689 |
by JS Mon, 2014-04-21 06:47 |
|
|
Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
2 |
2,320 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
6,227 |
by dgront Mon, 2014-04-21 06:47 |
|
|
Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
1 |
2,822 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
14 |
9,181 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Webinar? by IgaK » Thu, 2009-11-19 03:26 |
0 |
1,215 |
by IgaK Mon, 2014-04-21 06:47 |
|
|
Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
2 |
219 |
by rjacak Thu, 2022-03-31 10:53 |
|
|
weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,220 |
by louisclark Mon, 2014-04-21 06:47 |
|
|
Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
2,311 |
by smlewis Thu, 2016-06-30 08:44 |
|
|
what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
0 |
646 |
by jmaly Wed, 2020-09-02 16:16 |
|
|
what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
10 |
7,231 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
1 |
4,659 |
by rmoretti Tue, 2015-11-10 11:52 |
|
|
What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
2 |
2,734 |
by cossio Wed, 2014-12-03 14:51 |
|
|
what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
2,688 |
by rmoretti Mon, 2014-09-29 13:45 |
|
|
What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
2 |
5,739 |
by lanselibai Mon, 2014-09-22 08:13 |
|
|
what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
2 |
8,938 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
855 |
by matteoferla Wed, 2020-01-01 04:30 |
|
|
What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
1,312 |
by matteoferla Wed, 2020-01-29 12:18 |
|
|
What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
2,673 |
by PaulaBanks Mon, 2014-04-21 06:48 |
|
|
What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
1 |
1,963 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
0 |
777 |
by bio_james Wed, 2017-12-13 09:13 |
|
|
What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
11 |
6,041 |
by smlewis Tue, 2017-08-29 08:56 |
|
|
what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
2 |
2,282 |
by jarod Mon, 2014-04-21 06:47 |
|
|
What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
4 |
3,832 |
by cossio Thu, 2014-12-04 05:41 |
|
|
what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
4,781 |
by syoifczeri Mon, 2015-11-02 03:59 |
|
|
what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
1 |
1,710 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
2,969 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
6 |
4,927 |
by rmoretti Fri, 2014-03-28 09:03 |
|
|
What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
5,930 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
3,541 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
1 |
5,226 |
by rmoretti Tue, 2014-07-01 12:45 |
|
|
When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
3 |
2,750 |
by rmoretti Sun, 2015-07-05 14:28 |
|
|
where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
1 |
1,961 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,022 |
by mxp Wed, 2020-07-08 23:25 |
|
|
Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
1 |
1,560 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
1,564 |
by mao_x Thu, 2019-08-08 01:37 |
|
|
which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
2 |
2,253 |
by renedominik Sat, 2018-07-07 03:03 |
|
|
which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
1 |
1,689 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
2,397 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
12 |
7,452 |
by smlewis Thu, 2016-12-22 13:11 |
|
|
why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
2,780 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
625 |
by matteoferla Mon, 2021-07-12 02:23 |
|
|
why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
3,471 |
by rmoretti Mon, 2015-02-09 11:21 |
|
|
Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
2 |
3,412 |
by JeffreyGray Mon, 2014-04-21 06:47 |
|
|
Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
1 |
1,499 |
by smlewis Sun, 2016-03-13 15:25 |
|
|
Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
2 |
1,701 |
by eminegenetics Wed, 2018-07-18 13:48 |
|
|
why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
1 |
1,858 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
1 |
2,120 |
by londonir Mon, 2014-04-21 06:47 |
|
|
Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,098 |
by j.schmue Tue, 2020-01-28 13:31 |
|
|
Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
2,318 |
by pachecoj Thu, 2014-10-09 18:15 |
|
|
[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
3 |
1,924 |
by rmoretti Mon, 2017-10-30 12:02 |
|
|
[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
778 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
|
|
[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
1 |
1,498 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
|
|
[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
1 |
1,198 |
by rmoretti Tue, 2018-01-30 08:29 |
|
|
[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
2,650 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
|
|
[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
4 |
3,196 |
by msardejani Sun, 2016-08-07 17:49 |
|
|
B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,200 |
by straore Fri, 2015-04-17 01:54 |
Log in to post new content in the forum.
