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Rosetta 3 - General
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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1,335 |
by vmulligan Wed, 2021-04-28 14:20 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
3,832 |
by smlewis Mon, 2014-04-21 06:47 |
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ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
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2,224 |
by rmoretti Tue, 2016-07-12 08:47 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
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2,329 |
by smlewis Mon, 2014-04-21 06:47 |
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Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
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15,625 |
by tevang Mon, 2014-04-21 06:47 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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1,665 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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929 |
by rmoretti Tue, 2021-11-30 07:41 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,098 |
by rmoretti Mon, 2014-04-21 06:47 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
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457 |
by JW_24 Tue, 2023-01-24 04:55 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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3,856 |
by jcsaborio Mon, 2014-04-21 06:47 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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874 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
7 |
6,326 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
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2,123 |
by rmoretti Tue, 2018-01-30 09:08 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,290 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
18 |
18,008 |
by jadolfbr Wed, 2014-05-14 08:51 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
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9,374 |
by rmoretti Mon, 2016-05-09 09:23 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
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3,671 |
by zharmad Mon, 2014-04-21 06:47 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,463 |
by lanselibai Sun, 2014-11-16 10:44 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,260 |
by code_Monkey Thu, 2021-03-18 08:03 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
4 |
4,992 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
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4,282 |
by IAndre Mon, 2014-04-21 06:47 |
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symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
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1,919 |
by rmoretti Tue, 2016-09-13 07:41 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
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2,146 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
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2,836 |
by IAndre Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
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3,071 |
by doranhen Mon, 2014-04-21 06:47 |
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symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
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3,457 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
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4,220 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
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2,865 |
by smlewis Mon, 2014-04-21 06:47 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
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8,494 |
by rmoretti Mon, 2014-04-21 06:47 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
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6,167 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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16,083 |
by rmoretti Mon, 2014-04-21 06:48 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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235 |
by chenna Sun, 2023-04-23 23:52 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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388 |
by mrosam Mon, 2022-08-08 01:37 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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1,701 |
by rmoretti Tue, 2016-07-12 08:48 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
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2,687 |
by doranhen Mon, 2014-04-21 06:47 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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2,167 |
by rmoretti Sat, 2018-03-17 10:43 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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2,940 |
by asbelx Thu, 2018-04-26 00:23 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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7,912 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
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3,638 |
by jrcf Fri, 2015-10-16 10:57 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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912 |
by asbelx Mon, 2022-06-06 23:15 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
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3,418 |
by smlewis Mon, 2014-04-21 06:47 |
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the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
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1,986 |
by rmoretti Fri, 2015-07-03 13:14 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,444 |
by smlewis Mon, 2014-04-21 06:47 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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1,016 |
by asbelx Wed, 2021-09-08 23:19 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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1,618 |
by rmoretti Tue, 2019-07-09 15:57 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
4,086 |
by rmoretti Mon, 2018-01-15 15:34 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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4,292 |
by ac.research Mon, 2017-09-04 16:43 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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1,433 |
by rmoretti Wed, 2021-02-03 14:45 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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6,904 |
by vmulligan Thu, 2020-07-16 23:31 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,483 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
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6,142 |
by Lindsay Mon, 2014-04-21 06:47 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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1,990 |
by rmoretti Thu, 2018-06-28 14:28 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,237 |
by smlewis Mon, 2014-04-21 06:47 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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627 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
3 |
3,519 |
by alejandro Mon, 2014-04-21 06:47 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
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471 |
by Wexter300 Mon, 2023-02-13 13:04 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
4,210 |
by einew Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
6 |
5,745 |
by Anonymous Mon, 2014-04-21 06:47 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
11 |
7,215 |
by rohi Sun, 2020-07-26 17:03 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
5 |
4,529 |
by rmoretti Thu, 2017-08-03 09:01 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
1 |
2,099 |
by frichter Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,405 |
by cheyuk Sun, 2015-09-20 02:08 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
1 |
1,323 |
by rmoretti Mon, 2019-08-26 14:52 |
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Unable to download Rosetta by Yair Tenorio » Mon, 2023-10-23 11:48 |
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180 |
by Yair Tenorio Mon, 2023-10-23 12:29 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
3 |
895 |
by aniyaz Wed, 2023-01-11 01:24 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
1,920 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
0 |
512 |
by mgupta Fri, 2022-12-09 01:03 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
1 |
1,892 |
by rmoretti Tue, 2015-10-27 08:46 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,467 |
by rlwoltz Mon, 2014-04-21 06:47 |
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unit and scientific tests by tricia » Sat, 2009-05-09 23:29 |
1 |
2,003 |
by smlewis Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,244 |
by rmoretti Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
4,253 |
by jiongzhang Mon, 2014-04-21 06:47 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
4 |
4,005 |
by linucks Fri, 2018-02-23 08:08 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
4,117 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
0 |
868 |
by kalabharath Mon, 2020-06-29 06:59 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
1 |
555 |
by almeida85 Fri, 2022-08-12 05:56 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
6,052 |
by rmoretti Thu, 2015-04-16 10:09 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
4 |
4,707 |
by rmoretti Mon, 2015-03-30 14:43 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
1 |
1,248 |
by matteoferla Tue, 2020-04-14 03:36 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
6,317 |
by einew Mon, 2014-04-21 06:47 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
2 |
2,512 |
by Al52 Tue, 2015-12-01 18:22 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
8 |
8,218 |
by ndousis Mon, 2014-04-21 06:47 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
7 |
8,248 |
by moehle Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
4,141 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
10 |
10,780 |
by jurkm Mon, 2014-04-21 06:47 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,779 |
by jurkm Mon, 2014-04-21 06:47 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
0 |
952 |
by rohi Thu, 2020-10-15 10:28 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,680 |
by smlewis Wed, 2017-03-22 14:02 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
2 |
3,191 |
by scombs Mon, 2014-04-21 06:47 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
822 |
by ate Sat, 2021-05-01 02:22 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
888 |
by ate Sat, 2021-05-01 02:52 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
2 |
2,533 |
by htorres Mon, 2018-02-05 06:53 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
6 |
7,844 |
by JS Mon, 2014-04-21 06:47 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
2 |
2,814 |
by smlewis Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
7,162 |
by dgront Mon, 2014-04-21 06:47 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
1 |
586 |
by rmoretti Fri, 2022-08-26 14:51 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
1 |
3,150 |
by smlewis Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
14 |
11,036 |
by Anonymous Mon, 2014-04-21 06:47 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
0 |
1,477 |
by IgaK Mon, 2014-04-21 06:47 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
2 |
981 |
by rjacak Thu, 2022-03-31 10:53 |
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