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Rosetta 3 - General
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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14,837 |
by rmoretti Mon, 2014-04-21 06:48 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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190 |
by mrosam Mon, 2022-08-08 01:37 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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1,490 |
by rmoretti Tue, 2016-07-12 08:48 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
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2,411 |
by doranhen Mon, 2014-04-21 06:47 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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1,882 |
by rmoretti Sat, 2018-03-17 10:43 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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2,425 |
by asbelx Thu, 2018-04-26 00:23 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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7,335 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
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3,283 |
by jrcf Fri, 2015-10-16 10:57 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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558 |
by asbelx Mon, 2022-06-06 23:15 |
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the meaning of "maxsub" in score.fsc by exchhattu » Tue, 2009-11-10 04:37 |
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3,139 |
by smlewis Mon, 2014-04-21 06:47 |
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the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
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1,778 |
by rmoretti Fri, 2015-07-03 13:14 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,243 |
by smlewis Mon, 2014-04-21 06:47 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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794 |
by asbelx Wed, 2021-09-08 23:19 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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1,380 |
by rmoretti Tue, 2019-07-09 15:57 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
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3,425 |
by rmoretti Mon, 2018-01-15 15:34 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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3,790 |
by ac.research Mon, 2017-09-04 16:43 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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1,003 |
by rmoretti Wed, 2021-02-03 14:45 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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5,998 |
by vmulligan Thu, 2020-07-16 23:31 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,354 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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total energy score of the pdb structure by Lindsay » Tue, 2012-05-01 12:14 |
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5,737 |
by Lindsay Mon, 2014-04-21 06:47 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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1,756 |
by rmoretti Thu, 2018-06-28 14:28 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,051 |
by smlewis Mon, 2014-04-21 06:47 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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236 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
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3,217 |
by alejandro Mon, 2014-04-21 06:47 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
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105 |
by Wexter300 Mon, 2023-02-13 13:04 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
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3,850 |
by einew Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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5,253 |
by Anonymous Mon, 2014-04-21 06:47 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
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5,805 |
by rohi Sun, 2020-07-26 17:03 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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3,962 |
by rmoretti Thu, 2017-08-03 09:01 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
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1,925 |
by frichter Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
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3,973 |
by cheyuk Sun, 2015-09-20 02:08 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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1,079 |
by rmoretti Mon, 2019-08-26 14:52 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
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240 |
by aniyaz Wed, 2023-01-11 01:24 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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1,617 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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284 |
by mgupta Fri, 2022-12-09 01:03 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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1,687 |
by rmoretti Tue, 2015-10-27 08:46 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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6,828 |
by rlwoltz Mon, 2014-04-21 06:47 |
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unit and scientific tests by tricia » Sat, 2009-05-09 23:29 |
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1,798 |
by smlewis Mon, 2014-04-21 06:47 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
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3,047 |
by rmoretti Mon, 2014-04-21 06:47 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
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3,898 |
by jiongzhang Mon, 2014-04-21 06:47 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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3,361 |
by linucks Fri, 2018-02-23 08:08 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
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3,753 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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707 |
by kalabharath Mon, 2020-06-29 06:59 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
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285 |
by almeida85 Fri, 2022-08-12 05:56 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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5,509 |
by rmoretti Thu, 2015-04-16 10:09 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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4,284 |
by rmoretti Mon, 2015-03-30 14:43 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,042 |
by matteoferla Tue, 2020-04-14 03:36 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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5,765 |
by einew Mon, 2014-04-21 06:47 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
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2,210 |
by Al52 Tue, 2015-12-01 18:22 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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7,507 |
by ndousis Mon, 2014-04-21 06:47 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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7,662 |
by moehle Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
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3,702 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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9,917 |
by jurkm Mon, 2014-04-21 06:47 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
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1,634 |
by jurkm Mon, 2014-04-21 06:47 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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792 |
by rohi Thu, 2020-10-15 10:28 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
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1,477 |
by smlewis Wed, 2017-03-22 14:02 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
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2,911 |
by scombs Mon, 2014-04-21 06:47 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
730 |
by ate Sat, 2021-05-01 02:52 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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673 |
by ate Sat, 2021-05-01 02:22 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
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2,159 |
by htorres Mon, 2018-02-05 06:53 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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7,234 |
by JS Mon, 2014-04-21 06:47 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
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2,561 |
by smlewis Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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6,639 |
by dgront Mon, 2014-04-21 06:47 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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278 |
by rmoretti Fri, 2022-08-26 14:51 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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2,968 |
by smlewis Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
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10,034 |
by Anonymous Mon, 2014-04-21 06:47 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,341 |
by IgaK Mon, 2014-04-21 06:47 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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607 |
by rjacak Thu, 2022-03-31 10:53 |
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weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
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2,429 |
by louisclark Mon, 2014-04-21 06:47 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
2,615 |
by smlewis Thu, 2016-06-30 08:44 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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798 |
by jmaly Wed, 2020-09-02 16:16 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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7,945 |
by smlewis Mon, 2014-04-21 06:47 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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5,209 |
by rmoretti Tue, 2015-11-10 11:52 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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3,079 |
by cossio Wed, 2014-12-03 14:51 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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2,987 |
by rmoretti Mon, 2014-09-29 13:45 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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6,231 |
by lanselibai Mon, 2014-09-22 08:13 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
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9,267 |
by Lindsay Mon, 2014-04-21 06:47 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,041 |
by matteoferla Wed, 2020-01-01 04:30 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
2 |
1,711 |
by matteoferla Wed, 2020-01-29 12:18 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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2,946 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
1 |
2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
0 |
904 |
by bio_james Wed, 2017-12-13 09:13 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
11 |
6,891 |
by smlewis Tue, 2017-08-29 08:56 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
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2,516 |
by jarod Mon, 2014-04-21 06:47 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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4,339 |
by cossio Thu, 2014-12-04 05:41 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
5,260 |
by syoifczeri Mon, 2015-11-02 03:59 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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397 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
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1,870 |
by smlewis Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
3 |
3,241 |
by smlewis Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
6 |
5,414 |
by rmoretti Fri, 2014-03-28 09:03 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
0 |
245 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
6,396 |
by smlewis Mon, 2014-04-21 06:47 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
4,008 |
by smlewis Mon, 2014-04-21 06:47 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
1 |
5,581 |
by rmoretti Tue, 2014-07-01 12:45 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
3 |
3,043 |
by rmoretti Sun, 2015-07-05 14:28 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,107 |
by smlewis Mon, 2014-04-21 06:47 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,280 |
by mxp Wed, 2020-07-08 23:25 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
3 |
301 |
by rmoretti Mon, 2022-11-14 07:27 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
1 |
1,716 |
by smlewis Mon, 2014-04-21 06:47 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
1,869 |
by mao_x Thu, 2019-08-08 01:37 |
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