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Rosetta 3 - General
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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by pedro.guillem Wed, 2020-06-24 04:42 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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by matteoferla Wed, 2020-07-22 03:08 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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710 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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709 |
by ate Sat, 2021-05-01 02:22 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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by Sunidhi Sun, 2020-11-01 11:01 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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704 |
by michelleqyh Fri, 2020-08-21 09:00 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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703 |
by rmoretti Fri, 2022-02-18 11:14 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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702 |
by pci112 Mon, 2021-04-12 08:12 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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693 |
by adityapadhi Wed, 2020-06-24 01:29 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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693 |
by sia Tue, 2022-07-05 05:47 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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688 |
by rjacak Thu, 2022-03-31 10:53 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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676 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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674 |
by LanMei Tue, 2022-03-22 20:45 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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671 |
by rvandamme Mon, 2021-02-01 13:39 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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666 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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665 |
by jadolfbr Sat, 2022-02-12 23:16 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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664 |
by jeanramos Mon, 2020-07-13 00:56 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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660 |
by Corvin Wed, 2021-05-19 07:54 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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652 |
by e3lm Fri, 2022-05-06 16:10 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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641 |
by ajasja Thu, 2021-11-18 00:33 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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639 |
by almeida85 Thu, 2022-08-11 00:29 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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639 |
by asbelx Mon, 2022-06-06 23:15 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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by rmoretti Mon, 2022-07-18 11:56 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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by pedro.guillem Thu, 2020-07-23 03:45 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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632 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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RNA update library by Anne Klein » Mon, 2022-05-16 16:04 |
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by Anne Klein Tue, 2022-05-24 21:38 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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607 |
by whiteqiu Mon, 2021-03-01 18:32 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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600 |
by cryosky Sun, 2021-09-26 13:24 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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585 |
by dkesar Fri, 2021-06-04 19:09 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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576 |
by vmulligan Thu, 2022-03-03 18:48 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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572 |
by matteoferla Fri, 2022-06-03 01:09 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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by ate Wed, 2021-06-16 19:19 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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by rohi Fri, 2021-06-25 10:29 |
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Output and Input Tutorial by jgustat » Fri, 2022-07-01 13:07 |
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by jgustat Fri, 2022-07-01 13:26 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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by CameronJA Mon, 2021-06-14 16:12 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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by Antonia Wed, 2021-06-16 12:30 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
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by johnnytam100 Tue, 2022-06-07 19:18 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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by Soler Sat, 2021-11-20 23:41 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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526 |
by mb0261 Mon, 2022-09-26 07:50 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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by JasonIsaac Mon, 2022-11-07 19:15 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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by Soler Sat, 2022-01-15 22:09 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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by tisozaki Tue, 2021-12-14 17:16 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
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by csvajda Thu, 2022-06-30 16:26 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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by rmoretti Mon, 2023-02-20 16:07 |
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Renumbering PDB by jgustat » Wed, 2022-07-27 13:37 |
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by jgustat Thu, 2022-07-28 10:00 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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498 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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492 |
by ajasja Mon, 2022-05-23 07:19 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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483 |
by lsong2 Thu, 2021-11-18 10:31 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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by hanzhiz Thu, 2021-12-16 09:32 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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by Wenithor Sat, 2021-10-09 07:23 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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by asaf.farhi Wed, 2022-04-13 15:05 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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470 |
by hanzhiz Thu, 2021-12-16 09:18 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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by aneeqh Fri, 2022-09-02 13:36 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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by rmoretti Tue, 2022-08-09 06:52 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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by matteoferla Wed, 2022-07-20 10:33 |
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Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
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452 |
by rmoretti Mon, 2022-09-12 07:01 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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by rmoretti Thu, 2022-09-29 00:15 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
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by almeida85 Thu, 2022-08-11 00:32 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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by tlopes Wed, 2022-01-05 18:19 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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by matteoferla Fri, 2022-06-17 10:38 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
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434 |
by Ken Wed, 2022-08-17 08:04 |
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mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
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by matteoferla Thu, 2022-06-09 14:41 |
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Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
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by rmoretti Tue, 2022-06-28 11:06 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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404 |
by JasonIsaac Mon, 2022-12-05 18:41 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
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by rmoretti Thu, 2023-02-16 13:48 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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by rmoretti Mon, 2022-11-14 07:27 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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by guowuchen Thu, 2022-06-23 04:43 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
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by brubin Tue, 2022-12-20 13:26 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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by rmoretti Fri, 2022-08-26 14:51 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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by rlwoltz Fri, 2022-04-29 15:15 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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by tonycheng1688 Mon, 2022-04-25 13:51 |
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pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
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by Liviu Copoiu Tue, 2022-11-08 10:43 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
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336 |
by almeida85 Fri, 2022-08-12 05:56 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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331 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
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by aniyaz Wed, 2023-01-11 01:24 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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327 |
by mgupta Fri, 2022-12-09 01:03 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
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325 |
by rmoretti Tue, 2022-09-06 08:22 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
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318 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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312 |
by rmoretti Mon, 2022-09-12 06:58 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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312 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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311 |
by ldx022 Sat, 2023-03-11 16:53 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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309 |
by rmoretti Tue, 2022-09-06 08:13 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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308 |
by rmoretti Wed, 2022-09-07 09:19 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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306 |
by Hyun Tue, 2022-03-29 19:53 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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298 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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295 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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295 |
by Robertofg Tue, 2022-11-22 00:34 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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294 |
by mb0261 Tue, 2022-12-06 10:16 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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288 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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286 |
by aastha.pal Mon, 2022-06-27 09:34 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
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276 |
by Zehui Zhou Wed, 2023-02-15 05:40 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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275 |
by csvajda Sat, 2022-08-13 08:08 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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275 |
by rmoretti Wed, 2022-09-14 09:14 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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269 |
by Karthik Wed, 2022-07-13 23:45 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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266 |
by rmoretti Mon, 2023-02-06 14:42 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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260 |
by mb0261 Thu, 2022-06-30 10:48 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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259 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
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256 |
by kwu030 Thu, 2023-05-18 08:31 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
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256 |
by rmoretti Mon, 2023-01-30 08:04 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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248 |
by ialvy Tue, 2022-08-30 00:00 |
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