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Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
806 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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4,270 by xujc
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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2,118 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,585 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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768 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
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627 by csvajda
Sat, 2022-08-13 08:08
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,492 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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863 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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687 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
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420 by chenna
Sun, 2023-04-23 23:52
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
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1,807 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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725 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
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624 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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1,568 by gobli033
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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1,600 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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1,450 by jferrie
Mon, 2018-04-23 15:25
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
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788 by rohi
Fri, 2021-06-25 10:29
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
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566 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic JD3 FastRelax over MPI - crashes on relax completion/before writing output
by aduffy33 » Tue, 2024-03-12 12:51
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239 by aduffy33
Tue, 2024-03-12 12:52
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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1,495 by albumns
Mon, 2014-04-21 06:47
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
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980 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
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949 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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801 by Soler
Sat, 2021-11-20 23:41
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
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1,674 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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804 by Soler
Sat, 2022-01-15 22:09
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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1,565 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
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1,531 by tricia
Mon, 2014-04-21 06:47
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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1,412 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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1,028 by yinasun
Fri, 2019-07-26 02:17
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
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946 by haom
Tue, 2020-09-01 18:50
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
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1,103 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
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554 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
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957 by pci112
Mon, 2021-04-12 08:12
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
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584 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic GALigandDock errors
by Delfosse57 » Mon, 2023-08-07 13:16
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520 by Delfosse57
Mon, 2023-08-07 13:16
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
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1,668 by sdh
Mon, 2014-04-21 06:47
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
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627 by almeida85
Thu, 2022-11-17 01:04
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
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1,573 by lanselibai
Sun, 2014-11-16 10:44
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
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1,219 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
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1,378 by hajar
Wed, 2020-06-10 11:17
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
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594 by Karthik
Wed, 2022-07-13 23:45
Normal topic Problem with sugar parameters
by Martin Floor » Sat, 2023-10-07 10:17
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545 by Martin Floor
Sat, 2023-10-07 10:17
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
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883 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Methodology Feedback with As(III) and Pb(II) Binding
by rnogy » Mon, 2023-11-06 17:05
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325 by rnogy
Mon, 2023-11-06 17:06
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
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862 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
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1,002 by rohi
Mon, 2021-03-15 06:31
Normal topic How many rifdock can I run at a time on a 64 CPUs and 512GB memory server?
by JasonIsaac » Tue, 2023-05-02 03:39
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436 by JasonIsaac
Tue, 2023-05-02 03:39
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
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1,654 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
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695 by mgupta
Fri, 2022-12-09 01:03
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
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1,068 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
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923 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Canceling jobs - RosettaDock5.0
by katie » Tue, 2024-04-09 12:30
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144 by katie
Tue, 2024-04-09 12:30
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
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988 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
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411 by mrosam
Thu, 2023-05-25 05:14
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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1,795 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
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795 by tisozaki
Tue, 2021-12-14 17:16
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
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1,217 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
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1,055 by Kazu
Wed, 2020-05-20 11:58
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
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550 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,585 by justin
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
995 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
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992 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
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772 by CameronJA
Mon, 2021-06-14 16:12
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,656 by DanielK
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
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1,181 by bio_james
Wed, 2017-12-13 09:13
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
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1,154 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
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587 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic how to generate _prepro.rama file for a customized beta-amino acid residues?
by wwwmrzkwww » Sun, 2023-04-23 14:25
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433 by wwwmrzkwww
Sun, 2023-04-23 14:25
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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2,045 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
1,687 by abhishek
Mon, 2014-04-21 06:47
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
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1,123 by BioPython
Sun, 2019-05-12 20:07
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
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848 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Segmentation Fault
by ileanexis » Mon, 2024-03-11 08:53
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189 by ileanexis
Mon, 2024-03-11 08:53
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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1,609 by justin
Mon, 2014-04-21 06:47
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
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673 by tlopes
Wed, 2022-01-05 18:19
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
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1,178 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
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894 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
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764 by guowuchen
Thu, 2022-06-23 04:43
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
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1,546 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
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1,303 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
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1,259 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
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1,196 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Replacing a single residue in a structure
by Wexter300 » Sat, 2023-09-16 14:23
0
552 by Wexter300
Sat, 2023-09-16 14:23

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