You are here

Rosetta 3 - General

Pages

Topic / Topic starter Replies Views Last postsort descending
Normal topic Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'?
by JW_24 » Tue, 2023-01-24 04:40
2
543 by JW_24
Tue, 2023-01-24 14:52
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
684 by Wexter300
Wed, 2023-01-25 12:34
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
646 by rmoretti
Mon, 2023-01-30 08:04
Normal topic Should all input structures to energy_based_clustering have an output pdb file?
by Brian Wiley » Mon, 2023-01-30 20:42
2
487 by Brian Wiley
Tue, 2023-01-31 19:08
Normal topic Run protein-protein docking parallelly by mpi
by Zehui Zhou » Thu, 2023-02-02 06:23
3
613 by Zehui Zhou
Fri, 2023-02-03 05:51
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
3
1,947 by Brian Wiley
Sat, 2023-02-04 23:26
Normal topic Error in H3_modeling_scores.fasc file from antibody_H3 program
by Brian Wiley » Sat, 2023-02-04 23:41
0
281 by Brian Wiley
Sat, 2023-02-04 23:43
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
1
407 by rmoretti
Mon, 2023-02-06 14:35
Normal topic Calculating shape complementarity of ligand and protein
by varunmc99 » Tue, 2023-01-17 11:29
1
491 by rmoretti
Mon, 2023-02-06 14:42
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
782 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic How to add uncommon metal elements into Rosetta and make it recognizable?
by JasonIsaac » Thu, 2023-02-09 00:08
4
715 by JasonIsaac
Sat, 2023-02-11 00:44
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
0
307 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic Truncating a protein using rosetta
by Wexter300 » Mon, 2023-02-13 12:05
2
454 by Wexter300
Mon, 2023-02-13 13:04
Normal topic Score function in protein-protein docking with constrains
by Zehui Zhou » Mon, 2023-02-06 03:31
2
648 by Zehui Zhou
Wed, 2023-02-15 05:40
Normal topic How to set jump between ligands
by Zehui Zhou » Wed, 2023-02-15 04:48
0
316 by Zehui Zhou
Wed, 2023-02-15 07:12
Normal topic Rosetta remodelling - how to change the added residue type instead of just VAL
by xuezhi » Wed, 2023-02-15 14:00
0
286 by xuezhi
Wed, 2023-02-15 14:00
Normal topic can't access rosetta commercial license download via given URL from CoMotion
by y_atsmonraz » Tue, 2023-02-14 11:04
8
1,154 by rmoretti
Thu, 2023-02-16 13:48
Normal topic How to handle/retain Metals (Zn, Ca) inside the Protein?
by aniyaz » Wed, 2023-01-11 03:21
6
1,129 by rmoretti
Mon, 2023-02-20 16:07
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
0
346 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
432 by rmoretti
Fri, 2023-02-24 13:58
Normal topic RuntimeError: CUDA out of memory.
by ravi.thakkar » Tue, 2023-03-07 00:27
2
512 by rmoretti
Tue, 2023-03-07 08:18
Normal topic Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting.
by ldx022 » Thu, 2023-03-09 17:03
3
725 by ldx022
Sat, 2023-03-11 16:53
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
420 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Error with residue selectors not counting indices correctly.
by Wexter300 » Tue, 2023-04-04 11:04
1
320 by ajasja
Wed, 2023-04-05 00:20
Normal topic how to generate _prepro.rama file for a customized beta-amino acid residues?
by wwwmrzkwww » Sun, 2023-04-23 14:25
0
227 by wwwmrzkwww
Sun, 2023-04-23 14:25
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
0
230 by chenna
Sun, 2023-04-23 23:52
Normal topic Any general way to generate .params file for beta and gamma NCAA?
by wwwmrzkwww » Wed, 2023-04-26 12:35
0
237 by wwwmrzkwww
Wed, 2023-04-26 12:35
Normal topic rosie github log in
by YUANXU » Tue, 2023-04-25 20:13
1
319 by Sergey
Thu, 2023-04-27 12:03
Normal topic How many rifdock can I run at a time on a 64 CPUs and 512GB memory server?
by JasonIsaac » Tue, 2023-05-02 03:39
0
228 by JasonIsaac
Tue, 2023-05-02 03:39
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
3
1,584 by rmoretti
Tue, 2023-05-09 15:32
Normal topic Converting all residues to poly-Gly/Ala
by jtpi6174 » Tue, 2023-05-09 14:14
2
390 by jtpi6174
Tue, 2023-05-09 15:51
Normal topic Calculating SAP score using RosettaScripts
by varunmc99 » Fri, 2023-05-12 11:03
2
452 by varunmc99
Fri, 2023-05-12 11:49
Normal topic Intel MPI: early exit due to job process stopped.
by jackzzs » Mon, 2023-05-15 02:57
0
665 by jackzzs
Mon, 2023-05-15 03:17
Normal topic Figuring out the input flags required for this script
by jjung380 » Wed, 2023-04-19 14:17
3
678 by rmoretti
Mon, 2023-05-15 15:23
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
818 by rmoretti
Tue, 2023-05-16 07:10
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 12:58
12
1,701 by kwu030
Thu, 2023-05-18 08:31
Normal topic Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help)
by seamoon » Wed, 2023-05-24 07:46
0
220 by seamoon
Wed, 2023-05-24 07:46
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
0
228 by mrosam
Thu, 2023-05-25 05:14
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
0
254 by almeida85
Thu, 2023-05-25 06:18
Normal topic Questions about gen_apo_grids
by JasonIsaac » Sat, 2023-06-17 00:20
0
209 by JasonIsaac
Sat, 2023-06-17 00:20
Normal topic different relaxed energy scores for one same protein structure
by ivareve125 » Sun, 2023-07-16 17:54
2
321 by ivareve125
Mon, 2023-07-17 17:37
Normal topic GALigandDock errors
by Delfosse57 » Mon, 2023-08-07 13:16
0
319 by Delfosse57
Mon, 2023-08-07 13:16
Normal topic [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
by Jane_002 » Tue, 2023-08-08 21:07
0
390 by Jane_002
Tue, 2023-08-08 21:07
Normal topic Generating Params File for water molecule
by Ahmed Raslan » Thu, 2023-08-17 13:13
0
389 by Ahmed Raslan
Thu, 2023-08-17 13:13
Normal topic Error when using published constraints file
by Delfosse57 » Thu, 2023-08-17 11:22
2
278 by ikalvet
Mon, 2023-08-21 05:52
Normal topic Predicting conformations of mutated residues
by Delfosse57 » Tue, 2023-08-22 12:26
1
202 by rmoretti
Wed, 2023-08-23 08:26
Normal topic RosettaDock - protonation states
by LWilliamson » Tue, 2023-08-15 08:15
6
631 by nannemdp
Thu, 2023-08-24 08:21
Normal topic Replacing a single residue in a structure
by Wexter300 » Sat, 2023-09-16 14:23
0
359 by Wexter300
Sat, 2023-09-16 14:23
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
2
1,502 by Alvin Yang
Wed, 2023-10-04 03:34
Normal topic Problem with sugar parameters
by Martin Floor » Sat, 2023-10-07 10:17
0
324 by Martin Floor
Sat, 2023-10-07 10:17
Normal topic Docking antibody to membrane protein
by Yegor_Ko » Thu, 2023-10-12 07:37
2
220 by Yegor_Ko
Fri, 2023-10-20 01:35
Normal topic Unable to download Rosetta
by Yair Tenorio » Mon, 2023-10-23 11:48
2
172 by Yair Tenorio
Mon, 2023-10-23 12:29
Normal topic ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr
by alove1 » Sat, 2023-10-28 17:19
3
165 by alove1
Mon, 2023-10-30 13:18
Normal topic JD3 w/ Silent file output crashing - Option filename not found
by aduffy33 » Mon, 2023-10-30 13:40
2
138 by aduffy33
Mon, 2023-10-30 15:35
Normal topic protein-protein docking
by LUOD » Thu, 2023-11-02 18:23
0
79 by LUOD
Thu, 2023-11-02 18:25
Normal topic FARFAR2 Error With Secondary Structure File
by bdh81 » Thu, 2023-11-02 09:01
2
134 by bdh81
Sun, 2023-11-05 16:04
Normal topic Methodology Feedback with As(III) and Pb(II) Binding
by rnogy » Mon, 2023-11-06 17:05
0
72 by rnogy
Mon, 2023-11-06 17:06
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
0
43 by Eden
Sat, 2023-11-18 02:39

Pages

New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General