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Rosetta 3 - General

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Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
7,358 by dgront
Mon, 2014-04-21 06:47
Normal topic Using specific rotamers
by sahn97 » Fri, 2022-08-26 13:45
1
692 by rmoretti
Fri, 2022-08-26 14:51
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
3,205 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
11,385 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,519 by IgaK
Mon, 2014-04-21 06:47
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
1,136 by rjacak
Thu, 2022-03-31 10:53
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,779 by louisclark
Mon, 2014-04-21 06:47
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
3,071 by smlewis
Thu, 2016-06-30 08:44
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
1,020 by jmaly
Wed, 2020-09-02 16:16
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
9,005 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,888 by rmoretti
Tue, 2015-11-10 11:52
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
3,620 by cossio
Wed, 2014-12-03 14:51
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
3,474 by rmoretti
Mon, 2014-09-29 13:45
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
6,929 by lanselibai
Mon, 2014-09-22 08:13
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
9,746 by Lindsay
Mon, 2014-04-21 06:47
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,312 by matteoferla
Wed, 2020-01-01 04:30
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
2,285 by matteoferla
Wed, 2020-01-29 12:18
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
3,403 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
2,406 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the expected behaviour when minimizing a jump edge?
by bio_james » Wed, 2017-12-13 09:13
0
1,116 by bio_james
Wed, 2017-12-13 09:13
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
8,157 by smlewis
Tue, 2017-08-29 08:56
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
2,858 by jarod
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
4,929 by cossio
Thu, 2014-12-04 05:41
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
5,975 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
4
1,371 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
2,116 by smlewis
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
3,640 by smlewis
Mon, 2014-04-21 06:47
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
6,257 by rmoretti
Fri, 2014-03-28 09:03
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
0
527 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
7,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
4,772 by smlewis
Mon, 2014-04-21 06:47
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
6,135 by rmoretti
Tue, 2014-07-01 12:45
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
3,474 by rmoretti
Sun, 2015-07-05 14:28
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
2,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
1,696 by mxp
Wed, 2020-07-08 23:25
Normal topic Where is Sicdock application now? Can I find a substitute?
by JasonIsaac » Sun, 2022-11-13 03:41
3
958 by rmoretti
Mon, 2022-11-14 07:27
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,960 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
2,332 by mao_x
Thu, 2019-08-08 01:37
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
0
431 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
3,235 by renedominik
Sat, 2018-07-07 03:03
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
2,150 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
3,001 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'?
by JW_24 » Tue, 2023-01-24 04:40
2
710 by JW_24
Tue, 2023-01-24 14:52
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
9,835 by smlewis
Thu, 2016-12-22 13:11
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
3,427 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why does the sum of the per-residue total energy not match the whole score?
by matteoferla » Fri, 2021-07-09 08:36
2
1,540 by matteoferla
Mon, 2021-07-12 02:23
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
4,335 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
3,954 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,953 by smlewis
Sun, 2016-03-13 15:25
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
2,336 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
2,242 by smlewis
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,505 by londonir
Mon, 2014-04-21 06:47
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,768 by j.schmue
Tue, 2020-01-28 13:31
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,981 by pachecoj
Thu, 2014-10-09 18:15
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
1,142 by rmoretti
Mon, 2022-07-18 11:56
Normal topic Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting.
by ldx022 » Thu, 2023-03-09 17:03
3
954 by ldx022
Sat, 2023-03-11 16:53
Normal topic [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
by Jane_002 » Tue, 2023-08-08 21:07
0
488 by Jane_002
Tue, 2023-08-08 21:07
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
2,732 by rmoretti
Mon, 2017-10-30 12:02
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
0
1,082 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,971 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,683 by rmoretti
Tue, 2018-01-30 08:29
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
3,580 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
4,135 by msardejani
Sun, 2016-08-07 17:49
Normal topic [Question] How do the <FILTERS> confidence work?
by jrom » Wed, 2024-01-24 10:25
1
126 by rmoretti
Wed, 2024-01-24 11:55
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,798 by straore
Fri, 2015-04-17 01:54

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