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Rosetta 3 - General

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Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,545 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
1,874 by wlzhang
Sun, 2014-04-20 18:17
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,451 by ssrb
Tue, 2016-07-12 10:02
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
859 by rmoretti
Tue, 2020-10-13 11:40
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,686 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
2,907 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
1,578 by smlewis
Mon, 2018-03-12 09:57
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
1,017 by rmoretti
Wed, 2019-04-03 10:03
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
788 by windmill
Thu, 2020-06-18 21:32
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,540 by IAndre
Mon, 2014-04-21 06:47
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,340 by rmoretti
Tue, 2018-04-10 16:00
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
1,047 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,491 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,863 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,201 by jyy
Mon, 2020-01-13 17:19
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,986 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
1,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,811 by rmoretti
Mon, 2014-06-09 10:05
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,588 by rmoretti
Fri, 2015-07-03 13:24
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,854 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,228 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
881 by matteoferla
Fri, 2020-07-24 03:06
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,615 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,763 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,230 by rmoretti
Tue, 2018-01-30 08:29
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,321 by rmoretti
Fri, 2017-09-08 15:15
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
2,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,590 by smlewis
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
2,037 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,828 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,569 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,104 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,748 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,963 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,872 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,161 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
895 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,046 by yuvals
Sat, 2014-06-21 02:17
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
841 by rmoretti
Tue, 2021-02-09 11:30
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,597 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,358 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,415 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
864 by rmoretti
Tue, 2021-02-09 09:37
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,574 by smlewis
Mon, 2014-04-21 06:47
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,332 by smlewis
Mon, 2014-04-21 06:47
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,547 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,332 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
525 by cryosky
Fri, 2021-09-17 22:04
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,261 by jtmacd
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,681 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,520 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,723 by sid
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,688 by Lati
Fri, 2015-11-20 03:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
190 by rmoretti
Thu, 2022-04-07 07:51
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,783 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,700 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,167 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,067 by smlewis
Thu, 2018-06-28 13:34
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,147 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,150 by rmoretti
Mon, 2018-03-19 09:08
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,055 by vmulligan
Mon, 2019-04-08 14:49
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,903 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,035 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,047 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
1,628 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
947 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,634 by rmoretti
Mon, 2016-11-14 15:12
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
879 by matteoferla
Tue, 2020-04-14 03:36
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,041 by danpf
Tue, 2019-09-03 10:39
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
393 by ajasja
Thu, 2021-11-18 00:33
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,137 by rmoretti
Mon, 2014-06-16 08:23
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,395 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
617 by rmoretti
Wed, 2021-07-14 07:07
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,554 by smlewis
Tue, 2015-12-22 08:31
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,772 by rmoretti
Wed, 2018-01-31 14:57
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,135 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,380 by smlewis
Mon, 2016-08-22 10:39
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
1,627 by denatured
Fri, 2019-12-13 11:19
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
701 by rmoretti
Wed, 2021-01-20 07:39
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
309 by vmulligan
Thu, 2022-03-03 18:48
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,596 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
1,873 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,903 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,598 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,809 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,085 by rmoretti
Thu, 2018-06-28 14:22
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,037 by rmoretti
Mon, 2019-08-26 15:00
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,003 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
648 by matteoferla
Thu, 2021-09-02 03:50
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,693 by rmoretti
Tue, 2014-11-11 13:22
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