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Rosetta 3 - General

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Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,379 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
2,005 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,799 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
3,395 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,567 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,832 by kaue
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
4,430 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
1,209 by cryosky
Fri, 2021-09-17 22:04
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,469 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
2,297 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,531 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,756 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,644 by rmoretti
Mon, 2018-03-19 09:08
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,555 by vmulligan
Mon, 2019-04-08 14:49
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,290 by smlewis
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
2,123 by Lati
Fri, 2015-11-20 03:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,745 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
583 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,259 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
2,175 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
2,131 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,980 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,568 by smlewis
Thu, 2018-06-28 13:34
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,614 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
2,007 by smlewis
Mon, 2014-04-21 06:47
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
3,320 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
2,286 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,485 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,580 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
2,219 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,421 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
715 by rmoretti
Tue, 2022-09-06 08:22
Normal topic Global Docking with output analysis RMS
by kwu030 » Fri, 2024-02-23 09:17
1
160 by rmoretti
Mon, 2024-02-26 08:24
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
2,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
3,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,072 by rmoretti
Mon, 2016-11-14 15:12
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
1,330 by matteoferla
Tue, 2020-04-14 03:36
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
2,146 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,584 by danpf
Tue, 2019-09-03 10:39
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
917 by ajasja
Thu, 2021-11-18 00:33
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,622 by rmoretti
Mon, 2014-06-16 08:23
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,886 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,695 by smlewis
Mon, 2014-04-21 06:47
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
2,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,879 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
1,160 by rmoretti
Wed, 2021-07-14 07:07
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
664 by rmoretti
Wed, 2022-09-14 09:14
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,981 by smlewis
Tue, 2015-12-22 08:31
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
2,307 by rmoretti
Wed, 2018-01-31 14:57
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
2,213 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,808 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,186 by nawsad
Fri, 2014-06-20 02:48
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,845 by smlewis
Mon, 2016-08-22 10:39
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
2,454 by denatured
Fri, 2019-12-13 11:19
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
1,207 by rmoretti
Wed, 2021-01-20 07:39
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
869 by vmulligan
Thu, 2022-03-03 18:48
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
2,179 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
3,377 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
3,215 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,071 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,331 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,594 by rmoretti
Thu, 2018-06-28 14:22
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,545 by rmoretti
Mon, 2019-08-26 15:00
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,528 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
1,350 by matteoferla
Thu, 2021-09-02 03:50
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
2,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
2,124 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,420 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,838 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,481 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
2,418 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
2,252 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
2,291 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,855 by rmoretti
Mon, 2017-03-06 08:37
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,446 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,412 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
3,075 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,567 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,798 by matteoferla
Thu, 2018-09-13 06:21
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
1
2,111 by paulbo
Sun, 2024-02-04 22:03
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
2,375 by smlewis
Mon, 2014-04-21 06:47
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
2,028 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
2,028 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,904 by rmoretti
Wed, 2016-06-15 16:06
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,418 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
2,143 by frichter
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
2,176 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,362 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
4,055 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,778 by smlewis
Wed, 2017-03-22 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,688 by jkleman
Sat, 2018-04-14 10:55
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,715 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
692 by almeida85
Fri, 2022-08-12 05:56
Normal topic Error about rifdocking
by ng98 » Mon, 2024-01-08 16:21
1
203 by rmoretti
Tue, 2024-01-09 23:41
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,903 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
2,130 by rmoretti
Fri, 2014-09-12 09:11
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,961 by rmoretti
Tue, 2015-11-10 11:52
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