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Rosetta 3 - General
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
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4,750 |
by matteoferla Wed, 2021-09-29 01:58 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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7,871 |
by mahajanr Mon, 2014-04-21 06:47 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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5,533 |
by rmoretti Tue, 2015-05-05 14:31 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,970 |
by smlewis Tue, 2018-06-12 10:54 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,106 |
by rmoretti Thu, 2018-03-08 07:46 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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4,838 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,989 |
by doranhen Mon, 2014-04-21 06:47 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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6,441 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,652 |
by matteoferla Wed, 2019-11-20 02:32 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
8,871 |
by xpzhang Mon, 2014-04-21 06:47 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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6,423 |
by rmoretti Thu, 2015-04-16 10:09 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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5,823 |
by linucks Wed, 2018-04-25 08:50 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
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5,406 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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7,018 |
by smlewis Mon, 2014-04-21 06:48 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,942 |
by smlewis Wed, 2018-04-11 11:45 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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5,135 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
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5,626 |
by aroop Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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7,869 |
by rmoretti Fri, 2015-07-03 14:02 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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5,471 |
by cannond Wed, 2017-03-08 03:00 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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6,103 |
by obdulia Wed, 2016-07-13 09:11 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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4,801 |
by jadolfbr Tue, 2019-04-16 09:15 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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7,865 |
by rlwoltz Mon, 2014-04-21 06:47 |
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setting timeout option in MPI run by syntekabio2019 » Mon, 2024-02-26 01:09 |
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378 |
by rmoretti Wed, 2024-02-28 09:20 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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6,709 |
by ssrb Tue, 2015-09-22 08:35 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
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7,984 |
by rmoretti Thu, 2016-04-28 15:53 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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8,585 |
by rmoretti Mon, 2017-08-14 09:06 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
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6,459 |
by rmoretti Mon, 2014-04-21 06:47 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
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5,416 |
by zeynep Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
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6,455 |
by smlewis Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
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7,380 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
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4,382 |
by freedman Mon, 2017-03-06 13:24 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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8,094 |
by albumns Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,942 |
by MRH Mon, 2014-04-21 06:48 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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7,168 |
by ritacc18 Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,733 |
by pachecoj Wed, 2017-03-29 12:32 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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6,591 |
by qlj Mon, 2014-04-21 06:47 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,946 |
by einew Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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6,070 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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5,068 |
by salvatta Mon, 2018-09-10 10:04 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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6,692 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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4,135 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
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5,018 |
by smlewis Mon, 2014-04-21 06:47 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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5,538 |
by rmoretti Sat, 2014-05-17 14:10 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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5,175 |
by rpache Mon, 2014-04-21 06:47 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,828 |
by everyday847 Mon, 2021-03-29 20:19 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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3,092 |
by rmoretti Fri, 2020-11-06 08:04 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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5,601 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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2,087 |
by matteoferla Fri, 2022-07-01 13:49 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
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4,984 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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5,348 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,912 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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4,371 |
by smlewis Wed, 2017-08-16 08:30 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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5,610 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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4,461 |
by Loki01 Thu, 2017-12-14 06:20 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,709 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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6,007 |
by rmoretti Tue, 2021-02-09 11:52 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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6,002 |
by smlewis Mon, 2014-04-21 06:47 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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5,083 |
by smlewis Tue, 2016-08-30 13:47 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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5,570 |
by smlewis Mon, 2014-04-21 06:47 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
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5,001 |
by w107kdk Mon, 2014-04-21 06:47 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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5,725 |
by rmoretti Sat, 2015-04-25 10:05 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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5,256 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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4,834 |
by rmoretti Thu, 2017-08-03 09:01 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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2,176 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
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5,341 |
by attesor Mon, 2014-04-21 06:47 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,585 |
by smlewis Tue, 2018-07-03 11:22 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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4,751 |
by smlewis Wed, 2018-03-21 08:42 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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6,630 |
by einew Mon, 2014-04-21 06:47 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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5,008 |
by pachecoj Sat, 2014-08-09 06:33 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,640 |
by code_Monkey Thu, 2021-03-18 08:03 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
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4,935 |
by jadolfbr Mon, 2014-04-21 06:47 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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10,162 |
by jtmacd Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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5,251 |
by banshee Tue, 2016-04-26 00:47 |
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Problem with relaxing a PDB around a chemically bound ligand by drinker615 » Sat, 2024-04-06 16:04 |
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198 |
by drinker615 Tue, 2024-04-16 19:06 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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15,694 |
by nawsad Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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10,625 |
by dgront Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,919 |
by rmoretti Mon, 2014-04-21 06:48 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
4,376 |
by mdyini Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,673 |
by cheyuk Sun, 2015-09-20 02:08 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
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4,348 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
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5,055 |
by jtmacd Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
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5,654 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
4 |
4,700 |
by w107kdk Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
4,519 |
by rmoretti Mon, 2014-04-21 06:47 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
4 |
4,254 |
by msardejani Sun, 2016-08-07 17:49 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
4 |
3,331 |
by nannemdp Fri, 2021-02-05 06:49 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
4,255 |
by smlewis Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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7,516 |
by dgront Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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4,485 |
by albumns Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
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4,739 |
by gw Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
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2,945 |
by decrSTL Tue, 2019-08-27 10:24 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
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4,539 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
4 |
6,150 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
4 |
3,588 |
by rmoretti Wed, 2018-11-21 14:11 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
4 |
4,735 |
by pardave Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,864 |
by rmoretti Mon, 2018-01-15 15:24 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
4 |
2,925 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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4,594 |
by zaldini Fri, 2015-01-02 05:38 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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4,702 |
by lzx32 Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
4 |
5,442 |
by nilkoeg Mon, 2014-04-21 06:47 |
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