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Rosetta 3 - General
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
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6,665 |
by rmoretti Mon, 2014-04-21 06:48 |
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combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
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3,691 |
by freedman Mon, 2017-03-06 13:24 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
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4,806 |
by zeynep Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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7,343 |
by albumns Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,228 |
by MRH Mon, 2014-04-21 06:48 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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6,485 |
by ritacc18 Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,038 |
by pachecoj Wed, 2017-03-29 12:32 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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5,943 |
by qlj Mon, 2014-04-21 06:47 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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4,053 |
by salvatta Mon, 2018-09-10 10:04 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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6,040 |
by smlewis Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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5,310 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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3,349 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
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4,340 |
by smlewis Mon, 2014-04-21 06:47 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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4,773 |
by smlewis Mon, 2014-04-21 06:47 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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4,879 |
by rmoretti Sat, 2014-05-17 14:10 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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4,553 |
by rpache Mon, 2014-04-21 06:47 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,052 |
by everyday847 Mon, 2021-03-29 20:19 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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2,302 |
by rmoretti Fri, 2020-11-06 08:04 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,410 |
by einew Mon, 2014-04-21 06:47 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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4,714 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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1,050 |
by matteoferla Fri, 2022-07-01 13:49 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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4,961 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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3,663 |
by Loki01 Thu, 2017-12-14 06:20 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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4,803 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,183 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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3,636 |
by smlewis Wed, 2017-08-16 08:30 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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7,111 |
by mahajanr Mon, 2014-04-21 06:47 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,010 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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4,978 |
by rmoretti Tue, 2021-02-09 11:52 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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4,366 |
by smlewis Tue, 2016-08-30 13:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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5,308 |
by smlewis Mon, 2014-04-21 06:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,632 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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4,085 |
by rmoretti Thu, 2017-08-03 09:01 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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1,122 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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5,035 |
by rmoretti Sat, 2015-04-25 10:05 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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3,713 |
by smlewis Tue, 2018-07-03 11:22 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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3,837 |
by smlewis Wed, 2018-03-21 08:42 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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4,376 |
by pachecoj Sat, 2014-08-09 06:33 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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9,128 |
by jtmacd Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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4,785 |
by code_Monkey Thu, 2021-03-18 08:03 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
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4,322 |
by smlewis Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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4,560 |
by banshee Tue, 2016-04-26 00:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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9,867 |
by dgront Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,216 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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14,132 |
by nawsad Mon, 2014-04-21 06:47 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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3,364 |
by rmoretti Thu, 2018-03-08 07:46 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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5,902 |
by einew Mon, 2014-04-21 06:47 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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4,764 |
by rmoretti Tue, 2015-05-05 14:31 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,244 |
by smlewis Tue, 2018-06-12 10:54 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
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4,385 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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4,005 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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5,734 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,349 |
by doranhen Mon, 2014-04-21 06:47 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
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4,298 |
by w107kdk Mon, 2014-04-21 06:47 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
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4,641 |
by attesor Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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2,785 |
by matteoferla Wed, 2019-11-20 02:32 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
8,246 |
by xpzhang Mon, 2014-04-21 06:47 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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4,847 |
by linucks Wed, 2018-04-25 08:50 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
5,642 |
by rmoretti Thu, 2015-04-16 10:09 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
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4,535 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
5 |
3,224 |
by smlewis Wed, 2018-04-11 11:45 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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6,162 |
by smlewis Mon, 2014-04-21 06:48 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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4,592 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
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3,864 |
by matteoferla Wed, 2021-09-29 01:58 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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4,576 |
by cannond Wed, 2017-03-08 03:00 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
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4,951 |
by aroop Mon, 2014-04-21 06:47 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
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5,285 |
by obdulia Wed, 2016-07-13 09:11 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
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3,716 |
by jadolfbr Tue, 2019-04-16 09:15 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
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6,996 |
by rlwoltz Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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7,113 |
by rmoretti Fri, 2015-07-03 14:02 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
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5,797 |
by rmoretti Mon, 2014-04-21 06:47 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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5,927 |
by ssrb Tue, 2015-09-22 08:35 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
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7,227 |
by rmoretti Thu, 2016-04-28 15:53 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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7,468 |
by rmoretti Mon, 2017-08-14 09:06 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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635 |
by almeida85 Thu, 2022-08-11 00:29 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
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2,687 |
by eminegenetics Fri, 2018-09-21 07:42 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,080 |
by smlewis Wed, 2016-07-13 23:41 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
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3,929 |
by justin Mon, 2014-04-21 06:47 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
10,687 |
by smlewis Mon, 2014-04-21 06:47 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,040 |
by saxen Mon, 2016-04-25 10:38 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
5,059 |
by phanvy Wed, 2014-10-08 01:42 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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2,905 |
by rmoretti Fri, 2018-08-03 11:39 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
4 |
312 |
by Shweata Maurya Wed, 2023-02-08 03:19 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,108 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,397 |
by zharmad Mon, 2014-04-21 06:47 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
2,694 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
989 |
by protein_fan Fri, 2022-04-15 17:41 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
3,873 |
by bo Mon, 2014-04-21 06:47 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
4,187 |
by smlewis Mon, 2014-04-21 06:47 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
4 |
1,842 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
4,258 |
by rmoretti Mon, 2014-04-21 06:47 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
4 |
2,375 |
by matteoferla Sat, 2020-03-21 09:14 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,080 |
by einew Mon, 2014-04-21 06:47 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
3,804 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
3,405 |
by smlewis Wed, 2016-03-30 09:52 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
4 |
3,862 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
4 |
3,543 |
by jtmacd Mon, 2014-04-21 06:47 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
2,432 |
by Kazu Mon, 2020-05-18 10:52 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
3,987 |
by jiongzhang Mon, 2014-04-21 06:47 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
4 |
1,857 |
by everyday847 Thu, 2021-04-01 11:59 |
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