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Rosetta 3 - General

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Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
821 by ate
Sat, 2021-05-01 02:22
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,333 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
1,079 by rmoretti
Tue, 2021-04-20 13:06
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
1,185 by rmoretti
Tue, 2021-04-13 06:42
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
820 by pci112
Mon, 2021-04-12 08:12
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,132 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Ligand being read as part of protein structure
by MarkusAurelius » Thu, 2021-04-01 11:00
2
1,462 by MarkusAurelius
Fri, 2021-04-02 11:44
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
2,289 by everyday847
Thu, 2021-04-01 11:59
Normal topic clean_pdb.py
by duz » Wed, 2021-03-24 13:36
2
1,990 by duz
Thu, 2021-04-01 09:34
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
1,079 by matteoferla
Thu, 2021-04-01 04:06
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
2,484 by everyday847
Mon, 2021-03-29 20:19
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
1,248 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic de novo protein prediction
by pci112 » Tue, 2021-03-23 10:13
2
1,407 by pci112
Thu, 2021-03-25 01:44
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,808 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic I Need Help on Validation for a Ligand Docking Experiment.
by tbelec » Sat, 2021-03-20 13:27
1
1,381 by matteoferla
Mon, 2021-03-22 08:29
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
5,259 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
1,693 by rmoretti
Wed, 2021-03-17 13:52
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
0
873 by rohi
Mon, 2021-03-15 06:31
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
1,206 by aloshbau
Tue, 2021-03-09 02:47
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
14
15,368 by jseco
Mon, 2021-03-08 03:46
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
1,823 by zhoubin
Mon, 2021-03-01 22:11
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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747 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,676 by szcshr123
Fri, 2021-02-26 14:41
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
0
963 by matteoferla
Fri, 2021-02-26 07:12
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
1,293 by dgront
Thu, 2021-02-11 08:30
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,755 by rmoretti
Tue, 2021-02-09 13:45
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,416 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Help with filtering (Rosetta scripts)
by wentlewi » Sat, 2020-10-24 10:12
1
1,274 by rmoretti
Tue, 2021-02-09 12:35
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,249 by rmoretti
Tue, 2021-02-09 12:25
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
1,323 by rmoretti
Tue, 2021-02-09 12:19
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
1,329 by brownbp1
Tue, 2021-02-09 12:12
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
1,267 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
5,513 by rmoretti
Tue, 2021-02-09 11:52
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
1,245 by rmoretti
Tue, 2021-02-09 11:30
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
1,097 by rmoretti
Tue, 2021-02-09 10:48
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
0
1,741 by hltorresvera
Tue, 2021-02-09 10:44
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
991 by rmoretti
Tue, 2021-02-09 10:29
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,409 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
2,472 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
1,306 by almeida85
Mon, 2021-02-08 09:50
Normal topic Can I compare binding affinity of different ligands using Rosetta?
by zg148119@ohio.edu » Sun, 2020-12-06 11:30
4
2,969 by nannemdp
Fri, 2021-02-05 06:49
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
1,431 by rmoretti
Wed, 2021-02-03 14:45
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
783 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Issues with angle Constraints during Docking
by LeonhardJS » Thu, 2021-01-28 04:40
2
1,553 by LeonhardJS
Fri, 2021-01-29 01:12
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
1,111 by rmoretti
Wed, 2021-01-20 07:39
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
1,797 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,756 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
937 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
2,741 by rmoretti
Fri, 2020-11-06 08:04
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
4,547 by helenah
Tue, 2020-11-03 04:33
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
833 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
1,635 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
952 by rohi
Thu, 2020-10-15 10:28
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
1,272 by rmoretti
Tue, 2020-10-13 11:40
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
1,598 by rohi
Tue, 2020-10-13 09:15
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
1,231 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
3,831 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
1,479 by JW_24
Wed, 2020-09-23 01:27
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
2,301 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
5,439 by matteoferla
Sat, 2020-09-12 03:02
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,659 by bjharris
Wed, 2020-09-09 20:04
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
926 by haom
Wed, 2020-09-09 09:19
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
968 by jmaly
Wed, 2020-09-02 16:16
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
839 by haom
Tue, 2020-09-01 18:50
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
1,663 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
852 by nferruz
Fri, 2020-08-28 06:05
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
802 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
2,388 by brspurri
Thu, 2020-08-20 13:22
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
3,671 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
1,525 by Smbat
Thu, 2020-07-30 03:07
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
7,209 by rohi
Sun, 2020-07-26 17:03
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
1,266 by matteoferla
Fri, 2020-07-24 03:06
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
750 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
829 by matteoferla
Wed, 2020-07-22 03:08
Normal topic This element is not expected.
by ac.research » Fri, 2017-10-13 03:47
6
6,899 by vmulligan
Thu, 2020-07-16 23:31
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
1,031 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
762 by jeanramos
Mon, 2020-07-13 00:56
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
1,578 by mxp
Wed, 2020-07-08 23:25
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
960 by LTJ
Mon, 2020-07-06 14:13
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,257 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
868 by kalabharath
Mon, 2020-06-29 06:59
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,663 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
832 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,285 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
809 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,508 by matteoferla
Tue, 2020-06-23 10:58
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
777 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,263 by matteoferla
Sat, 2020-06-20 03:56
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
1,156 by windmill
Thu, 2020-06-18 21:32
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
873 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
819 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
1,224 by hajar
Wed, 2020-06-10 11:17
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
1,046 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,863 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,804 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,570 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
930 by Kazu
Wed, 2020-05-20 11:58
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,729 by Kazu
Mon, 2020-05-18 10:52
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
2,257 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
783 by pedro.guillem
Thu, 2020-05-14 04:22
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