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Rosetta 3 - General
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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821 |
by ate Sat, 2021-05-01 02:22 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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1,333 |
by vmulligan Wed, 2021-04-28 14:20 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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1,079 |
by rmoretti Tue, 2021-04-20 13:06 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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1,185 |
by rmoretti Tue, 2021-04-13 06:42 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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820 |
by pci112 Mon, 2021-04-12 08:12 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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1,132 |
by taylorjones Mon, 2021-04-05 13:17 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
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1,462 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
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2,289 |
by everyday847 Thu, 2021-04-01 11:59 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
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1,990 |
by duz Thu, 2021-04-01 09:34 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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1,079 |
by matteoferla Thu, 2021-04-01 04:06 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,484 |
by everyday847 Mon, 2021-03-29 20:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
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1,248 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
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1,407 |
by pci112 Thu, 2021-03-25 01:44 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
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1,808 |
by rlwoltz Wed, 2021-03-24 22:36 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,381 |
by matteoferla Mon, 2021-03-22 08:29 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,259 |
by code_Monkey Thu, 2021-03-18 08:03 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
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1,693 |
by rmoretti Wed, 2021-03-17 13:52 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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873 |
by rohi Mon, 2021-03-15 06:31 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,206 |
by aloshbau Tue, 2021-03-09 02:47 |
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Ab Initio Modelling of Protein with Small-Molecule Cofactor by jurkm » Thu, 2011-03-10 06:56 |
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15,368 |
by jseco Mon, 2021-03-08 03:46 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
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1,823 |
by zhoubin Mon, 2021-03-01 22:11 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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747 |
by whiteqiu Mon, 2021-03-01 18:32 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
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1,676 |
by szcshr123 Fri, 2021-02-26 14:41 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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963 |
by matteoferla Fri, 2021-02-26 07:12 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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1,293 |
by dgront Thu, 2021-02-11 08:30 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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1,755 |
by rmoretti Tue, 2021-02-09 13:45 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
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1,416 |
by rmoretti Tue, 2021-02-09 13:44 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,274 |
by rmoretti Tue, 2021-02-09 12:35 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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1,249 |
by rmoretti Tue, 2021-02-09 12:25 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
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1,323 |
by rmoretti Tue, 2021-02-09 12:19 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
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1,329 |
by brownbp1 Tue, 2021-02-09 12:12 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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1,267 |
by rmoretti Tue, 2021-02-09 12:02 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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5,513 |
by rmoretti Tue, 2021-02-09 11:52 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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1,245 |
by rmoretti Tue, 2021-02-09 11:30 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,097 |
by rmoretti Tue, 2021-02-09 10:48 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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1,741 |
by hltorresvera Tue, 2021-02-09 10:44 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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991 |
by rmoretti Tue, 2021-02-09 10:29 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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1,409 |
by rmoretti Tue, 2021-02-09 09:37 |
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
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2,472 |
by rmoretti Tue, 2021-02-09 09:22 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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1,306 |
by almeida85 Mon, 2021-02-08 09:50 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
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2,969 |
by nannemdp Fri, 2021-02-05 06:49 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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1,431 |
by rmoretti Wed, 2021-02-03 14:45 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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783 |
by rvandamme Mon, 2021-02-01 13:39 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
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1,553 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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1,111 |
by rmoretti Wed, 2021-01-20 07:39 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
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1,797 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
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1,756 |
by rmoretti Fri, 2020-11-13 12:58 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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937 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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2,741 |
by rmoretti Fri, 2020-11-06 08:04 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
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4,547 |
by helenah Tue, 2020-11-03 04:33 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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833 |
by Sunidhi Sun, 2020-11-01 11:01 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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1,635 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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952 |
by rohi Thu, 2020-10-15 10:28 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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1,272 |
by rmoretti Tue, 2020-10-13 11:40 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
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1,598 |
by rohi Tue, 2020-10-13 09:15 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,231 |
by amelie.stein Mon, 2020-09-28 10:41 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
6 |
3,831 |
by jadolfbr Thu, 2020-09-24 10:04 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
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1,479 |
by JW_24 Wed, 2020-09-23 01:27 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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2,301 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
11 |
5,439 |
by matteoferla Sat, 2020-09-12 03:02 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,659 |
by bjharris Wed, 2020-09-09 20:04 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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926 |
by haom Wed, 2020-09-09 09:19 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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968 |
by jmaly Wed, 2020-09-02 16:16 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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839 |
by haom Tue, 2020-09-01 18:50 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,663 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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852 |
by nferruz Fri, 2020-08-28 06:05 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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802 |
by michelleqyh Fri, 2020-08-21 09:00 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
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2,388 |
by brspurri Thu, 2020-08-20 13:22 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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3,671 |
by matteoferla Tue, 2020-08-11 10:00 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,525 |
by Smbat Thu, 2020-07-30 03:07 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
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7,209 |
by rohi Sun, 2020-07-26 17:03 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
1 |
1,266 |
by matteoferla Fri, 2020-07-24 03:06 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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750 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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829 |
by matteoferla Wed, 2020-07-22 03:08 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
6 |
6,899 |
by vmulligan Thu, 2020-07-16 23:31 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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1,031 |
by matteoferla Tue, 2020-07-14 01:51 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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762 |
by jeanramos Mon, 2020-07-13 00:56 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,578 |
by mxp Wed, 2020-07-08 23:25 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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960 |
by LTJ Mon, 2020-07-06 14:13 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
1,257 |
by vmulligan Mon, 2020-06-29 13:09 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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868 |
by kalabharath Mon, 2020-06-29 06:59 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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1,663 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
0 |
832 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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1,285 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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809 |
by adityapadhi Wed, 2020-06-24 01:29 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,508 |
by matteoferla Tue, 2020-06-23 10:58 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
0 |
777 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
1 |
1,263 |
by matteoferla Sat, 2020-06-20 03:56 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
1,156 |
by windmill Thu, 2020-06-18 21:32 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
873 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
819 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
1,224 |
by hajar Wed, 2020-06-10 11:17 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
1,046 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
1,863 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
1,804 |
by nannemdp Tue, 2020-05-26 06:33 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,570 |
by matteoferla Sat, 2020-05-23 03:09 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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930 |
by Kazu Wed, 2020-05-20 11:58 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
2,729 |
by Kazu Mon, 2020-05-18 10:52 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
2,257 |
by matteoferla Thu, 2020-05-14 07:01 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
0 |
783 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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