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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
4,724 by renedominik
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
3,946 by rmoretti
Mon, 2014-04-21 06:48
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
5,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
2,096 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
2,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
922 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
1,608 by justin
Mon, 2014-04-21 06:47
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
4,430 by rmoretti
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
6,388 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
4,842 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
2,264 by rmoretti
Mon, 2014-05-12 07:50
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,677 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
3,113 by Run
Mon, 2014-04-21 06:48
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
5,903 by kbuhr
Tue, 2015-07-14 04:30
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
983 by ajasja
Thu, 2021-11-18 00:33
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,755 by rmoretti
Wed, 2018-11-21 14:14
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,745 by rmoretti
Mon, 2014-04-21 06:47
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
1,485 by rmoretti
Tue, 2021-02-09 12:02
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
2,461 by lah435
Mon, 2017-04-03 19:50
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
6,578 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
10,848 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
1,490 by a.book
Wed, 2018-10-03 15:56
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
1,277 by rmoretti
Wed, 2021-01-20 07:39
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
1,766 by Smbat
Thu, 2020-07-30 03:07
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
16,667 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Converting all residues to poly-Gly/Ala
by jtpi6174 » Tue, 2023-05-09 14:14
2
809 by jtpi6174
Tue, 2023-05-09 15:51
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
4,277 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
11,003 by smlewis
Mon, 2014-04-21 06:47
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
759 by rmoretti
Wed, 2022-09-14 09:14
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
4,454 by mdyini
Mon, 2014-04-21 06:47
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
1,345 by matteoferla
Fri, 2020-04-10 02:40
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,749 by smlewis
Mon, 2014-04-21 06:47
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
4,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,524 by smlewis
Mon, 2014-04-21 06:47
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
1,806 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
2,163 by smlewis
Mon, 2014-04-21 06:47
Normal topic covalent ligand docking in Rosetta
by rohi » Mon, 2021-06-07 06:39
12
12,021 by matteoferla
Wed, 2021-07-14 04:03
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
1,106 by yangshen12
Fri, 2018-10-26 12:34
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
5,196 by smlewis
Mon, 2014-04-21 06:47
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
17,845 by aaj
Fri, 2016-04-22 15:20
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
3,383 by franfdez
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
3,193 by alejandro
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
4,362 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,821 by Karol
Mon, 2016-08-29 05:27
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
6,406 by matteoferla
Sat, 2020-09-12 03:02
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,745 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
1,125 by gezmi
Sat, 2021-11-06 15:26
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,139 by rmoretti
Mon, 2015-03-30 16:38
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04
7
7,910 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
3,236 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
2,458 by ac.research
Fri, 2017-03-31 07:36
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
3,563 by ela
Thu, 2018-08-09 08:04
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,542 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
3,148 by dave
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
6,014 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
1,903 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
33,014 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
3,421 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
1
2,393 by paulbo
Sun, 2024-02-04 22:03
Normal topic De Novo backbone generation vs Rosetta Match for enzdes and ligand binding.
by csvajda » Thu, 2022-06-30 09:55
2
1,050 by csvajda
Thu, 2022-06-30 16:26
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
2,050 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
2,682 by rmoretti
Tue, 2019-10-22 07:05
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
8,809 by rmoretti
Mon, 2017-08-14 09:06
Normal topic de novo protein prediction
by pci112 » Tue, 2021-03-23 10:13
2
1,619 by pci112
Thu, 2021-03-25 01:44
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
2,924 by everyday847
Mon, 2021-03-29 20:19
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
1,272 by rmoretti
Tue, 2021-02-09 10:48
Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23
8
8,579 by sacch
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,803 by smlewis
Mon, 2014-04-21 06:47
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
7,157 by smlewis
Mon, 2014-04-21 06:48
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
2,231 by smlewis
Mon, 2014-04-21 06:47
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
4,219 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
3,931 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
2,973 by ylwang
Wed, 2018-11-14 03:03
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
1,066 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
1,536 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
2,407 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
3,349 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
0
672 by tlopes
Wed, 2022-01-05 18:19
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
2,567 by matteoferla
Thu, 2019-08-22 05:39
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,879 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
626 by csvajda
Sat, 2022-08-13 08:08
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
4,567 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
3,106 by smlewis
Fri, 2014-02-28 05:45
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
4,532 by Apiwat
Thu, 2014-04-17 09:56
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
6,368 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,863 by rmoretti
Sat, 2014-03-22 11:40
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
1,195 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
4,517 by justin
Mon, 2014-04-21 06:47
Normal topic Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal?
by ericlang » Mon, 2021-07-05 05:43
2
1,354 by ericlang
Mon, 2021-07-05 06:59
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
1,025 by brubin
Tue, 2022-12-20 13:26
Normal topic different relaxed energy scores for one same protein structure
by ivareve125 » Sun, 2023-07-16 17:54
2
675 by ivareve125
Mon, 2023-07-17 17:37
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,787 by smlewis
Sun, 2017-01-15 18:10
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,713 by protein_fan
Fri, 2022-04-15 17:41
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,924 by smlewis
Mon, 2016-08-22 10:39
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
5,505 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score
by mrosam » Fri, 2024-04-19 07:57
0
180 by mrosam
Fri, 2024-04-19 07:57
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
1,531 by tricia
Mon, 2014-04-21 06:47
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
5,514 by allan.ferrari
Tue, 2017-01-03 11:15
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