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Rosetta 3 - General
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
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3,861 |
by rmoretti Mon, 2014-04-21 06:48 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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5,567 |
by smlewis Mon, 2014-04-21 06:47 |
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Compilation error by zgcarvalho » Fri, 2010-02-12 06:58 |
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2,061 |
by smlewis Mon, 2014-04-21 06:47 |
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Compilation in Mac OS 10.6 by rjn » Thu, 2010-02-18 12:35 |
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2,261 |
by smlewis Mon, 2014-04-21 06:47 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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886 |
by michelleqyh Fri, 2020-08-21 09:00 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,567 |
by justin Mon, 2014-04-21 06:47 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
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4,347 |
by rmoretti Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
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6,235 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
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4,730 |
by pachecoj Wed, 2017-03-29 12:32 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,218 |
by rmoretti Mon, 2014-05-12 07:50 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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1,603 |
by rmoretti Tue, 2021-02-09 09:37 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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3,050 |
by Run Mon, 2014-04-21 06:48 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
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5,805 |
by kbuhr Tue, 2015-07-14 04:30 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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939 |
by ajasja Thu, 2021-11-18 00:33 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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1,709 |
by rmoretti Wed, 2018-11-21 14:14 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
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2,755 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
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2,667 |
by rmoretti Mon, 2014-04-21 06:47 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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1,423 |
by rmoretti Tue, 2021-02-09 12:02 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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2,405 |
by lah435 Mon, 2017-04-03 19:50 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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6,467 |
by rmoretti Thu, 2014-07-17 09:21 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
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10,578 |
by rmoretti Mon, 2014-04-21 06:47 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,461 |
by a.book Wed, 2018-10-03 15:56 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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1,236 |
by rmoretti Wed, 2021-01-20 07:39 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,701 |
by Smbat Thu, 2020-07-30 03:07 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
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16,491 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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661 |
by jtpi6174 Tue, 2023-05-09 15:51 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
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4,191 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
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10,779 |
by smlewis Mon, 2014-04-21 06:47 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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706 |
by rmoretti Wed, 2022-09-14 09:14 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
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4,375 |
by mdyini Mon, 2014-04-21 06:47 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,297 |
by matteoferla Fri, 2020-04-10 02:40 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,693 |
by smlewis Mon, 2014-04-21 06:47 |
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could I add some constrain to the backbone but not completely fix it when relax? by albumns » Tue, 2010-06-29 05:43 |
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3,926 |
by smlewis Mon, 2014-04-21 06:47 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,487 |
by smlewis Mon, 2014-04-21 06:47 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,734 |
by exchhattu Mon, 2014-04-21 06:47 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
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2,128 |
by smlewis Mon, 2014-04-21 06:47 |
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covalent ligand docking in Rosetta by rohi » Mon, 2021-06-07 06:39 |
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11,629 |
by matteoferla Wed, 2021-07-14 04:03 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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1,079 |
by yangshen12 Fri, 2018-10-26 12:34 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
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5,118 |
by smlewis Mon, 2014-04-21 06:47 |
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Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2) by skovacs » Thu, 2012-05-10 20:10 |
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17,485 |
by aaj Fri, 2016-04-22 15:20 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
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3,332 |
by franfdez Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
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3,130 |
by alejandro Mon, 2014-04-21 06:47 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
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4,277 |
by smlewis Mon, 2014-04-21 06:47 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,778 |
by Karol Mon, 2016-08-29 05:27 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
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6,166 |
by matteoferla Sat, 2020-09-12 03:02 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
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2,696 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
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1,058 |
by gezmi Sat, 2021-11-06 15:26 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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2,094 |
by rmoretti Mon, 2015-03-30 16:38 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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7,773 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
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3,149 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
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2,396 |
by ac.research Fri, 2017-03-31 07:36 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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3,476 |
by ela Thu, 2018-08-09 08:04 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
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2,502 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
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3,068 |
by dave Mon, 2014-04-21 06:47 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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5,898 |
by Lindsay Mon, 2014-04-21 06:48 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,827 |
by dfcoelho Wed, 2019-11-20 05:39 |
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ddg energy components by japgar » Tue, 2010-07-13 13:20 |
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32,971 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
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3,355 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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2,194 |
by paulbo Sun, 2024-02-04 22:03 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
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979 |
by csvajda Thu, 2022-06-30 16:26 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
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1,985 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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2,603 |
by rmoretti Tue, 2019-10-22 07:05 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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8,579 |
by rmoretti Mon, 2017-08-14 09:06 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
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1,573 |
by pci112 Thu, 2021-03-25 01:44 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,825 |
by everyday847 Mon, 2021-03-29 20:19 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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1,234 |
by rmoretti Tue, 2021-02-09 10:48 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
8 |
8,378 |
by sacch Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,748 |
by smlewis Mon, 2014-04-21 06:47 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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7,016 |
by smlewis Mon, 2014-04-21 06:48 |
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demo documentation by lshi » Fri, 2009-08-28 08:51 |
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2,175 |
by smlewis Mon, 2014-04-21 06:47 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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4,102 |
by rmoretti Thu, 2018-03-08 07:46 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
3,816 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
2,891 |
by ylwang Wed, 2018-11-14 03:03 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
1,037 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
1,487 |
by rmoretti Sat, 2019-03-30 12:10 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
1 |
2,366 |
by smlewis Mon, 2014-04-21 06:47 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
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3,269 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
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1,961 |
by smlewis Mon, 2014-04-21 06:47 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
0 |
635 |
by tlopes Wed, 2022-01-05 18:19 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
2,486 |
by matteoferla Thu, 2019-08-22 05:39 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
4 |
2,805 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
574 |
by csvajda Sat, 2022-08-13 08:08 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
4,488 |
by smlewis Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
1 |
3,035 |
by smlewis Fri, 2014-02-28 05:45 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
2 |
4,403 |
by Apiwat Thu, 2014-04-17 09:56 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
6,161 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
1 |
4,795 |
by rmoretti Sat, 2014-03-22 11:40 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
1,153 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
4,438 |
by justin Mon, 2014-04-21 06:47 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
2 |
1,296 |
by ericlang Mon, 2021-07-05 06:59 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
2 |
927 |
by brubin Tue, 2022-12-20 13:26 |
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different relaxed energy scores for one same protein structure by ivareve125 » Sun, 2023-07-16 17:54 |
2 |
563 |
by ivareve125 Mon, 2023-07-17 17:37 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,734 |
by smlewis Sun, 2017-01-15 18:10 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
1,615 |
by protein_fan Fri, 2022-04-15 17:41 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,875 |
by smlewis Mon, 2016-08-22 10:39 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,382 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,501 |
by tricia Mon, 2014-04-21 06:47 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,394 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
10 |
13,158 |
by lanselibai Tue, 2015-02-10 14:03 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
2 |
3,228 |
by pledor Mon, 2014-04-21 06:47 |
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