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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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947 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
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948 |
by csvajda Mon, 2022-03-07 07:46 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
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948 |
by rmoretti Thu, 2022-04-07 07:51 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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948 |
by taylorjones Mon, 2021-04-05 13:17 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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950 |
by bio_james Wed, 2017-12-13 09:13 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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951 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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957 |
by fgomes Fri, 2019-11-22 19:12 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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963 |
by rlwoltz Mon, 2019-03-11 18:32 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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971 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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976 |
by zhoubin Fri, 2019-01-04 13:14 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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980 |
by ela Fri, 2018-08-31 02:53 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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985 |
by rmoretti Tue, 2021-04-13 06:42 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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987 |
by windmill Thu, 2020-06-18 21:32 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
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992 |
by protein_fan Fri, 2022-04-15 17:41 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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1,008 |
by patcD Wed, 2021-09-01 06:54 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,011 |
by aloshbau Tue, 2021-03-09 02:47 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,013 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
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1,018 |
by rmoretti Fri, 2021-05-28 08:54 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,046 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,055 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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1,056 |
by rmoretti Tue, 2021-02-09 11:30 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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1,061 |
by rmoretti Tue, 2021-02-09 12:25 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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1,065 |
by matteoferla Fri, 2022-07-01 13:49 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,068 |
by amelie.stein Mon, 2020-09-28 10:41 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,074 |
by sheehajh Fri, 2020-02-21 12:41 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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1,075 |
by hajar Wed, 2020-06-10 11:17 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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1,075 |
by almeida85 Mon, 2021-02-08 09:50 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,077 |
by matteoferla Mon, 2021-03-22 08:29 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
1 |
1,078 |
by dgront Thu, 2021-02-11 08:30 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,080 |
by vmulligan Mon, 2020-06-29 13:09 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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1,081 |
by matteoferla Thu, 2021-06-03 08:24 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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1,082 |
by vmulligan Wed, 2021-04-28 14:20 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
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1,087 |
by diasmarieli Fri, 2021-11-26 05:11 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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1,088 |
by rmoretti Tue, 2020-10-13 11:40 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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1,090 |
by rmoretti Tue, 2021-02-09 12:02 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,091 |
by matteoferla Wed, 2020-01-01 04:30 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,094 |
by matteoferla Tue, 2020-04-14 03:36 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
1,094 |
by matteoferla Mon, 2021-07-12 02:23 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,095 |
by rmoretti Tue, 2021-02-09 12:35 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
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1,095 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,097 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
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1,098 |
by guowuchen Wed, 2022-03-30 04:20 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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1,101 |
by matteoferla Fri, 2020-07-24 03:06 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,102 |
by rmoretti Mon, 2019-11-04 12:54 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
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1,102 |
by brownbp1 Tue, 2021-02-09 12:12 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,104 |
by matteoferla Sat, 2020-06-20 03:56 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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1,113 |
by Jhreed Fri, 2016-07-08 13:44 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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1,118 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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1,120 |
by rmoretti Wed, 2021-02-03 14:45 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
5 |
1,129 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,135 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
3 |
1,137 |
by rmoretti Tue, 2023-05-09 15:32 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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1,140 |
by rmoretti Mon, 2019-08-26 14:52 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,145 |
by rmoretti Tue, 2019-07-09 15:59 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,148 |
by renedominik Wed, 2020-02-12 06:16 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
1 |
1,149 |
by rmoretti Tue, 2021-02-09 12:19 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
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1,157 |
by smlewis Wed, 2019-05-29 13:21 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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1,159 |
by amystevens Thu, 2021-09-30 14:18 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,168 |
by rmoretti Wed, 2020-04-01 10:10 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,169 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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1,185 |
by rmoretti Tue, 2021-02-09 09:37 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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1,186 |
by rmoretti Sat, 2019-03-30 12:10 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
1,187 |
by pci112 Thu, 2021-03-25 01:44 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
1,189 |
by wentlewi Sat, 2020-05-16 08:06 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,192 |
by jferrie Mon, 2018-04-23 15:25 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,194 |
by smlewis Fri, 2019-06-28 13:56 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
1,195 |
by smlewis Wed, 2020-03-04 07:40 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
3 |
1,207 |
by matteoferla Mon, 2022-01-10 06:44 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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1,210 |
by connyyu Thu, 2019-04-18 03:26 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
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1,210 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,220 |
by fmerino Mon, 2017-10-16 04:02 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
1,221 |
by jeliazkov Fri, 2019-05-03 07:00 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,227 |
by rmoretti Wed, 2019-09-18 10:49 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
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1,230 |
by rmoretti Wed, 2019-04-03 10:03 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,234 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
1,234 |
by matteoferla Fri, 2021-08-20 08:37 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
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1,244 |
by rmoretti Tue, 2021-02-09 13:44 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
1,245 |
by jkleman Thu, 2020-01-16 11:05 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
1,261 |
by rmoretti Mon, 2018-10-08 11:20 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
0 |
1,267 |
by a.book Wed, 2018-10-03 15:56 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
1 |
1,269 |
by dfcoelho Tue, 2020-02-04 07:45 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
2 |
1,270 |
by JW_24 Wed, 2020-09-23 01:27 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
1,271 |
by rmoretti Mon, 2019-08-26 15:00 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
1 |
1,272 |
by rmoretti Thu, 2018-02-22 09:29 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
1 |
1,273 |
by vmulligan Mon, 2019-04-08 14:49 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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1,273 |
by danpf Tue, 2019-09-03 10:39 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
1,274 |
by AJVincelli Sun, 2018-11-25 11:09 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
1 |
1,278 |
by smlewis Thu, 2018-06-28 13:34 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,278 |
by matteoferla Tue, 2020-06-23 10:58 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
1,287 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,290 |
by albumns Mon, 2014-04-21 06:47 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
2 |
1,290 |
by matteoferla Thu, 2021-10-07 09:31 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
1 |
1,291 |
by rmoretti Thu, 2018-06-28 14:22 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,293 |
by DanielK Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
1 |
1,293 |
by rmoretti Mon, 2017-08-21 09:55 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,297 |
by rmoretti Mon, 2019-08-26 15:01 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
1,298 |
by sayan500 Tue, 2019-07-30 22:20 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
1 |
1,311 |
by rmoretti Mon, 2019-07-08 08:05 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,311 |
by tricia Mon, 2014-04-21 06:47 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
1 |
1,319 |
by ac.research Sat, 2017-11-18 06:54 |
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