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Rosetta 3 - General

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Normal topic undefined symbol: ZN9CifString12UnknownValueE error meaning?
by aniyaz » Wed, 2023-01-04 08:37
3
1,125 by aniyaz
Wed, 2023-01-11 01:24
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
1,127 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
1,127 by rmoretti
Wed, 2021-07-14 07:07
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
1,137 by ahuls1
Thu, 2021-07-29 13:23
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
1,144 by sia
Tue, 2022-07-05 05:47
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
1,147 by fgomes
Fri, 2019-11-22 19:12
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
1,149 by rjacak
Thu, 2022-03-31 10:53
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
1,149 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
1,150 by rmoretti
Mon, 2022-07-18 11:56
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
1,150 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
1,153 by rmoretti
Tue, 2021-04-20 13:06
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
1,153 by matteoferla
Thu, 2021-04-01 04:06
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
1,155 by zivben
Sat, 2021-07-31 08:16
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
1,178 by ela
Fri, 2018-08-31 02:53
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
1,181 by rmoretti
Tue, 2021-02-09 10:48
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
1,183 by cryosky
Fri, 2021-09-17 22:04
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
1,184 by rmoretti
Wed, 2021-01-20 07:39
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
1,185 by e3lm
Fri, 2022-05-06 16:10
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
0
1,186 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,207 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
1,223 by rmoretti
Wed, 2021-06-23 02:17
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
1,225 by windmill
Thu, 2020-06-18 21:32
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
1,227 by lanselibai
Thu, 2021-06-24 10:16
Normal topic solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind
by ziqi1234 » Thu, 2018-05-24 02:18
0
1,228 by ziqi1234
Thu, 2018-05-24 02:18
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
1,229 by rmoretti
Tue, 2023-05-16 07:10
Normal topic RosettaCM: "Ligands must be added to all templates"
by lanselibai » Tue, 2021-06-22 10:42
2
1,230 by lanselibai
Wed, 2021-06-23 13:21
Normal topic Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal?
by ericlang » Mon, 2021-07-05 05:43
2
1,235 by ericlang
Mon, 2021-07-05 06:59
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
1,239 by matteoferla
Fri, 2020-04-10 02:40
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
1,264 by hong wei
Thu, 2021-11-25 02:46
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
1,267 by Jhreed
Fri, 2016-07-08 13:44
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
1,278 by rmoretti
Tue, 2021-04-13 06:42
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
1,284 by aloshbau
Tue, 2021-03-09 02:47
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
1,286 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Help deciphering an input
by Elijah_Hix » Wed, 2021-09-22 11:12
2
1,286 by Elijah_Hix
Thu, 2021-09-23 10:13
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
1,290 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
1,292 by hajar
Wed, 2020-06-10 11:17
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
1,295 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
1,308 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
1,311 by matteoferla
Tue, 2020-04-14 03:36
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
1,312 by matteoferla
Thu, 2021-09-02 03:50
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,315 by matteoferla
Wed, 2020-01-01 04:30
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
1,319 by rmoretti
Tue, 2021-02-09 11:30
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,327 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,331 by rmoretti
Mon, 2019-11-04 12:54
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,333 by matteoferla
Sat, 2020-06-20 03:56
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,336 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
1,342 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,343 by rmoretti
Tue, 2021-02-09 12:25
Normal topic Help with filtering (Rosetta scripts)
by wentlewi » Sat, 2020-10-24 10:12
1
1,345 by rmoretti
Tue, 2021-02-09 12:35
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
1,352 by matteoferla
Fri, 2020-07-24 03:06
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,357 by almeida85
Thu, 2022-08-11 00:29
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
1,359 by jferrie
Mon, 2018-04-23 15:25
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,363 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic how does rosetta handle hydrogens?
by patcD » Tue, 2021-08-31 00:48
2
1,365 by patcD
Wed, 2021-09-01 06:54
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
1,369 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
1,369 by rmoretti
Tue, 2020-10-13 11:40
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
1,379 by fmerino
Mon, 2017-10-16 04:02
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,384 by renedominik
Wed, 2020-02-12 06:16
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
1,388 by smlewis
Wed, 2019-05-29 13:21
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
4
1,394 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
1,396 by dgront
Thu, 2021-02-11 08:30
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
1,396 by rmoretti
Wed, 2020-04-01 10:10
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
1,398 by rmoretti
Tue, 2021-02-09 12:19
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
1,399 by almeida85
Mon, 2021-02-08 09:50
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,399 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
1,400 by rmoretti
Mon, 2019-08-26 14:52
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,402 by rmoretti
Fri, 2021-05-28 08:54
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
1,416 by brownbp1
Tue, 2021-02-09 12:12
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
1,421 by a.book
Wed, 2018-10-03 15:56
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
1,422 by rmoretti
Sat, 2019-03-30 12:10
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,434 by DanielK
Mon, 2014-04-21 06:47
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
1,435 by albumns
Mon, 2014-04-21 06:47
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,443 by smlewis
Fri, 2019-06-28 13:56
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,451 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Rosetta Double changing mmCIF chain ID
by Victor Tobiasson » Thu, 2021-05-13 07:57
2
1,457 by Victor Tobiasson
Thu, 2021-05-13 08:33
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,458 by connyyu
Thu, 2019-04-18 03:26
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,460 by sayan500
Tue, 2019-07-30 22:20
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
1,465 by tricia
Mon, 2014-04-21 06:47
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
1,469 by ssrb
Tue, 2022-07-05 11:07
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
1,469 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
1,470 by rmoretti
Wed, 2019-04-03 10:03
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,481 by rmoretti
Wed, 2019-09-18 10:49
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,482 by exchhattu
Mon, 2014-04-21 06:47
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
0
1,482 by albumns
Mon, 2014-04-21 06:47
Normal topic How to handle/retain Metals (Zn, Ca) inside the Protein?
by aniyaz » Wed, 2023-01-11 03:21
6
1,490 by rmoretti
Mon, 2023-02-20 16:07
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
1,493 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,494 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,499 by matteoferla
Thu, 2021-06-03 08:24
Normal topic de novo protein prediction
by pci112 » Tue, 2021-03-23 10:13
2
1,500 by pci112
Thu, 2021-03-25 01:44
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,502 by jkleman
Thu, 2020-01-16 11:05
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,504 by smlewis
Wed, 2020-03-04 07:40
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
0
1,505 by gobli033
Mon, 2014-04-21 06:47
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,508 by rmoretti
Tue, 2021-02-09 13:44
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
1,509 by amystevens
Thu, 2021-09-30 14:18
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,509 by rmoretti
Mon, 2018-10-08 11:20
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
1,509 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
1,510 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,514 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,517 by protein_fan
Fri, 2022-04-15 17:41
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,520 by IgaK
Mon, 2014-04-21 06:47
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