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Rosetta 3 - General

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Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
966 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
968 by rmoretti
Wed, 2019-09-18 10:49
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
970 by jkleman
Thu, 2020-01-16 11:05
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
976 by JW_24
Wed, 2020-09-23 01:27
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
976 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
984 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
984 by rmoretti
Wed, 2019-04-03 10:03
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
996 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
997 by rmoretti
Mon, 2019-08-26 15:00
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
997 by rohi
Tue, 2020-10-13 09:15
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
999 by danpf
Tue, 2019-09-03 10:39
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
999 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,002 by vmulligan
Sat, 2020-04-11 17:40
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,003 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
1,005 by jferrie
Mon, 2018-04-23 15:25
Normal topic clean_pdb.py
by duz » Wed, 2021-03-24 13:36
2
1,006 by duz
Thu, 2021-04-01 09:34
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,009 by matteoferla
Sat, 2020-05-23 03:09
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,009 by vmulligan
Mon, 2019-04-08 14:49
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
1,011 by Smbat
Thu, 2020-07-30 03:07
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
1,019 by rmoretti
Thu, 2018-02-22 09:29
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
1,019 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
1,021 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
1,022 by mxp
Wed, 2020-07-08 23:25
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
1,025 by rmoretti
Mon, 2019-08-26 15:01
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,027 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,029 by smlewis
Thu, 2018-06-28 13:34
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
1,032 by a.book
Wed, 2018-10-03 15:56
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
1,042 by fmerino
Mon, 2017-10-16 04:02
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,042 by sayan500
Tue, 2019-07-30 22:20
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,050 by rmoretti
Thu, 2018-06-28 14:22
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,051 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,052 by rmoretti
Tue, 2019-07-09 15:48
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
1,061 by ac.research
Sat, 2017-11-18 06:54
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,061 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,075 by rmoretti
Mon, 2017-08-21 09:55
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,079 by rmoretti
Fri, 2020-11-13 12:58
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
1,080 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,094 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,098 by j.schmue
Tue, 2020-01-28 13:31
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,100 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
1,100 by rmoretti
Wed, 2018-11-21 14:01
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,102 by rmoretti
Wed, 2018-11-21 14:14
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
1,104 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,109 by rmoretti
Mon, 2018-03-19 09:08
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,110 by Loki01
Wed, 2017-12-13 05:27
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,113 by bjharris
Wed, 2020-09-09 20:04
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
1,113 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
1,121 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
1,122 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
1,123 by smlewis
Tue, 2018-08-07 16:59
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,123 by rmoretti
Mon, 2018-02-12 09:39
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,126 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,128 by rmoretti
Tue, 2021-02-09 13:45
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
1,135 by albumns
Mon, 2014-04-21 06:47
Normal topic Add a ligand with only one atom (i.e. Zn) to the RosettaCM
by lanselibai » Tue, 2021-06-22 10:28
6
1,140 by rmoretti
Thu, 2021-06-24 12:23
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,141 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,145 by rmoretti
Wed, 2019-04-03 09:31
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,148 by jalan
Thu, 2020-04-23 05:19
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,150 by rmoretti
Wed, 2018-08-01 16:04
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,152 by DanielK
Mon, 2014-04-21 06:47
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,154 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,163 by jyy
Mon, 2020-01-13 17:19
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
1,164 by tricia
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,164 by David
Tue, 2019-01-22 12:23
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,165 by jkleman
Sat, 2018-04-14 10:55
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,170 by nannemdp
Tue, 2020-05-26 06:33
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,178 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,185 by lanselibai
Sun, 2014-11-16 10:44
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
0
1,190 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,191 by exchhattu
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,198 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,203 by rmoretti
Wed, 2017-09-06 08:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,204 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
0
1,205 by justin
Mon, 2014-04-21 06:47
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,205 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
1,211 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
1,214 by ac.research
Fri, 2020-02-14 23:33
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
1,214 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,214 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,215 by IgaK
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,215 by rmoretti
Mon, 2018-02-05 15:44
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,222 by matteoferla
Thu, 2018-09-13 06:21
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
0
1,226 by albumns
Mon, 2014-04-21 06:47
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
0
1,226 by gobli033
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
1,233 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,237 by matteoferla
Wed, 2019-08-21 11:58
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
1,238 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,239 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
1,240 by everyday847
Thu, 2021-04-01 11:59
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
1,247 by justin
Mon, 2014-04-21 06:47
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,255 by smlewis
Wed, 2016-08-24 07:23
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
1,262 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
1,265 by ylwang
Tue, 2020-03-24 19:35
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,267 by rmoretti
Wed, 2019-04-03 09:58
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
0
1,267 by sdh
Mon, 2014-04-21 06:47
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,269 by myang
Mon, 2014-04-21 06:47
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,269 by tevang
Mon, 2014-04-21 06:47
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
1,275 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,276 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,277 by smlewis
Wed, 2017-03-22 14:02
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