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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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966 |
by dfcoelho Tue, 2020-02-04 07:45 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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968 |
by rmoretti Wed, 2019-09-18 10:49 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
970 |
by jkleman Thu, 2020-01-16 11:05 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
2 |
976 |
by JW_24 Wed, 2020-09-23 01:27 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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976 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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984 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
984 |
by rmoretti Wed, 2019-04-03 10:03 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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996 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
997 |
by rmoretti Mon, 2019-08-26 15:00 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
2 |
997 |
by rohi Tue, 2020-10-13 09:15 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
1 |
999 |
by danpf Tue, 2019-09-03 10:39 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
1 |
999 |
by ziheng@mit.edu Thu, 2019-04-25 14:31 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,002 |
by vmulligan Sat, 2020-04-11 17:40 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
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1,003 |
by rlwoltz Wed, 2021-03-24 22:36 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
0 |
1,005 |
by jferrie Mon, 2018-04-23 15:25 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
1,006 |
by duz Thu, 2021-04-01 09:34 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,009 |
by matteoferla Sat, 2020-05-23 03:09 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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1,009 |
by vmulligan Mon, 2019-04-08 14:49 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
2 |
1,011 |
by Smbat Thu, 2020-07-30 03:07 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,019 |
by rmoretti Thu, 2018-02-22 09:29 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
1,019 |
by AJVincelli Sun, 2018-11-25 11:09 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
2 |
1,021 |
by dfcoelho Wed, 2019-11-20 05:39 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,022 |
by mxp Wed, 2020-07-08 23:25 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,025 |
by rmoretti Mon, 2019-08-26 15:01 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
1,027 |
by rmoretti Mon, 2018-10-08 11:20 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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1,029 |
by smlewis Thu, 2018-06-28 13:34 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,032 |
by a.book Wed, 2018-10-03 15:56 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,042 |
by fmerino Mon, 2017-10-16 04:02 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,042 |
by sayan500 Tue, 2019-07-30 22:20 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
1 |
1,050 |
by rmoretti Thu, 2018-06-28 14:22 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,051 |
by jadolfbr Thu, 2019-08-29 14:29 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,052 |
by rmoretti Tue, 2019-07-09 15:48 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,061 |
by ac.research Sat, 2017-11-18 06:54 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,061 |
by rmoretti Mon, 2019-07-08 08:05 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,075 |
by rmoretti Mon, 2017-08-21 09:55 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
1 |
1,079 |
by rmoretti Fri, 2020-11-13 12:58 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
2 |
1,080 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
1,094 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,098 |
by j.schmue Tue, 2020-01-28 13:31 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,100 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
1 |
1,100 |
by rmoretti Wed, 2018-11-21 14:01 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
1 |
1,102 |
by rmoretti Wed, 2018-11-21 14:14 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
4 |
1,104 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
1 |
1,109 |
by rmoretti Mon, 2018-03-19 09:08 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
1 |
1,110 |
by Loki01 Wed, 2017-12-13 05:27 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,113 |
by bjharris Wed, 2020-09-09 20:04 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
2 |
1,113 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,121 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
1 |
1,122 |
by jadolfbr Fri, 2018-11-09 09:17 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
1 |
1,123 |
by smlewis Tue, 2018-08-07 16:59 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
1 |
1,123 |
by rmoretti Mon, 2018-02-12 09:39 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,126 |
by jeliazkov Tue, 2017-07-18 09:51 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,128 |
by rmoretti Tue, 2021-02-09 13:45 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,135 |
by albumns Mon, 2014-04-21 06:47 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
6 |
1,140 |
by rmoretti Thu, 2021-06-24 12:23 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
1,141 |
by rmoretti Tue, 2019-07-09 15:57 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
1,145 |
by rmoretti Wed, 2019-04-03 09:31 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,148 |
by jalan Thu, 2020-04-23 05:19 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
1 |
1,150 |
by rmoretti Wed, 2018-08-01 16:04 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,152 |
by DanielK Mon, 2014-04-21 06:47 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
1 |
1,154 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
1 |
1,163 |
by jyy Mon, 2020-01-13 17:19 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,164 |
by tricia Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
1,164 |
by David Tue, 2019-01-22 12:23 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
1 |
1,165 |
by jkleman Sat, 2018-04-14 10:55 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
1,170 |
by nannemdp Tue, 2020-05-26 06:33 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
1 |
1,178 |
by rmoretti Tue, 2019-07-09 12:31 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,185 |
by lanselibai Sun, 2014-11-16 10:44 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,190 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,191 |
by exchhattu Mon, 2014-04-21 06:47 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
1 |
1,198 |
by rmoretti Tue, 2018-01-30 08:29 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,203 |
by rmoretti Wed, 2017-09-06 08:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
0 |
1,204 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
0 |
1,205 |
by justin Mon, 2014-04-21 06:47 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
0 |
1,205 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
0 |
1,211 |
by ctaylor Mon, 2014-04-21 06:47 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
2 |
1,214 |
by ac.research Fri, 2020-02-14 23:33 |
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
3 |
1,214 |
by rmoretti Tue, 2021-02-09 09:22 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,214 |
by rmoretti Tue, 2017-03-28 09:02 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
0 |
1,215 |
by IgaK Mon, 2014-04-21 06:47 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
1 |
1,215 |
by rmoretti Mon, 2018-02-05 15:44 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
1 |
1,222 |
by matteoferla Thu, 2018-09-13 06:21 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
0 |
1,226 |
by albumns Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
0 |
1,226 |
by gobli033 Mon, 2014-04-21 06:47 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
0 |
1,233 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,237 |
by matteoferla Wed, 2019-08-21 11:58 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
1,238 |
by dfcoelho Tue, 2019-11-19 10:16 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
1,239 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
4 |
1,240 |
by everyday847 Thu, 2021-04-01 11:59 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
0 |
1,247 |
by justin Mon, 2014-04-21 06:47 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,255 |
by smlewis Wed, 2016-08-24 07:23 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
2 |
1,262 |
by G Mustafa Tue, 2020-01-21 06:04 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
3 |
1,265 |
by ylwang Tue, 2020-03-24 19:35 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
1,267 |
by rmoretti Wed, 2019-04-03 09:58 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,267 |
by sdh Mon, 2014-04-21 06:47 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
0 |
1,269 |
by myang Mon, 2014-04-21 06:47 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,269 |
by tevang Mon, 2014-04-21 06:47 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
0 |
1,275 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
1,276 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,277 |
by smlewis Wed, 2017-03-22 14:02 |
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