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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
6,347 |
by smlewis Mon, 2014-04-21 06:47 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
6,347 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
6,331 |
by rmoretti Thu, 2015-04-16 10:09 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
6,321 |
by lanselibai Fri, 2014-12-12 10:27 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
6 |
6,282 |
by rmoretti Thu, 2016-04-28 16:15 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
7 |
6,280 |
by rmoretti Mon, 2014-04-21 06:47 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
6 |
6,203 |
by smlewis Mon, 2014-04-21 06:47 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
1 |
6,196 |
by rmoretti Tue, 2014-07-01 12:45 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
6 |
6,194 |
by jurkm Mon, 2014-04-21 06:47 |
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computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
6,185 |
by rlwoltz Mon, 2014-04-21 06:47 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
6 |
6,157 |
by Anonymous Mon, 2014-04-21 06:47 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
6 |
6,147 |
by robren Mon, 2014-04-21 06:47 |
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Problems installing Rosetta by S » Fri, 2010-09-03 01:04 |
4 |
6,116 |
by abdullah_ahmed Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
2 |
6,112 |
by Apiwat Sat, 2014-02-08 01:41 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
9 |
6,097 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
6,078 |
by tevang Mon, 2014-04-21 06:47 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
6,076 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
6,071 |
by syoifczeri Mon, 2015-11-02 03:59 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
4 |
6,067 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
7 |
6,061 |
by sunhwan Mon, 2017-02-27 11:02 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
6,043 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
6,024 |
by fukamitka Mon, 2014-04-21 06:48 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
6,015 |
by cossio Thu, 2015-01-29 11:50 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
11 |
6,013 |
by matteoferla Sat, 2020-09-12 03:02 |
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calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
6,002 |
by obdulia Wed, 2016-07-13 09:11 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
6 |
5,981 |
by Anonymous Mon, 2014-04-21 06:47 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
5,979 |
by rmoretti Mon, 2014-04-21 06:48 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
1 |
5,963 |
by rmoretti Tue, 2015-11-10 11:52 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
5 |
5,941 |
by smlewis Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
5,938 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
5 |
5,931 |
by doranhen Mon, 2014-04-21 06:47 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
3 |
5,923 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
5 |
5,910 |
by rmoretti Tue, 2021-02-09 11:52 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
5 |
5,895 |
by einew Mon, 2014-04-21 06:47 |
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protein protein docking pipeline by dzhao » Thu, 2012-07-19 06:25 |
4 |
5,878 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
5 |
5,877 |
by MRH Mon, 2014-04-21 06:48 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
4 |
5,869 |
by lqzhang Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
5,854 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
5,853 |
by jadolfbr Mon, 2014-04-21 07:30 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
5,829 |
by Lindsay Mon, 2014-04-21 06:48 |
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modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
6 |
5,798 |
by jarod Mon, 2014-04-21 06:47 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,762 |
by kbuhr Tue, 2015-07-14 04:30 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
5,757 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
5 |
5,743 |
by linucks Wed, 2018-04-25 08:50 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
3 |
5,737 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
5,684 |
by Anonymous Mon, 2014-04-21 06:47 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
8 |
5,682 |
by ac.research Mon, 2020-02-10 08:19 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
5,673 |
by jwillis Sat, 2015-06-27 21:11 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
5 |
5,663 |
by rmoretti Sat, 2015-04-25 10:05 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
6 |
5,647 |
by rmoretti Thu, 2016-04-28 15:19 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
5,615 |
by phanvy Wed, 2014-10-08 01:42 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
6 |
5,599 |
by biofisikx Mon, 2014-04-21 06:47 |
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Picking the correct model from a large set of decoys (30,000+) by brspurri » Thu, 2012-04-26 15:37 |
4 |
5,598 |
by rmoretti Mon, 2014-04-21 06:47 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
3 |
5,593 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
3 |
5,589 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
5,565 |
by rmoretti Mon, 2014-04-21 06:48 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
5 |
5,564 |
by code_Monkey Thu, 2021-03-18 08:03 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
1 |
5,563 |
by yuvals Sat, 2014-06-21 02:17 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
5,557 |
by rmoretti Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
5,549 |
by aroop Mon, 2014-04-21 06:47 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
6 |
5,523 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
5,522 |
by Karol Thu, 2016-12-15 01:35 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
5 |
5,515 |
by smlewis Mon, 2014-04-21 06:47 |
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Linker problems when building mini by assaff » Mon, 2009-10-12 01:07 |
6 |
5,507 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
1 |
5,499 |
by smlewis Mon, 2014-04-21 06:47 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
4 |
5,485 |
by albumns Mon, 2014-04-21 06:47 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
5 |
5,475 |
by rmoretti Sat, 2014-05-17 14:10 |
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Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
6 |
5,463 |
by weallen Mon, 2014-04-21 06:47 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
5 |
5,456 |
by rmoretti Tue, 2015-05-05 14:31 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
6 |
5,413 |
by byin Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
4 |
5,404 |
by nilkoeg Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
5,397 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
5 |
5,387 |
by cannond Wed, 2017-03-08 03:00 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
6 |
5,379 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
5 |
5,357 |
by zeynep Mon, 2014-04-21 06:47 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
3 |
5,355 |
by pholland Mon, 2014-04-21 06:47 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
5,351 |
by rosa Mon, 2014-04-21 06:48 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
4 |
5,332 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,325 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
3 |
5,316 |
by smlewis Mon, 2014-04-21 06:47 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
5,314 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
5,306 |
by glemmon Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
5,290 |
by Ashafix Wed, 2014-02-19 06:53 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
5,284 |
by rmoretti Mon, 2014-04-21 06:47 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
5 |
5,279 |
by attesor Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
4 |
5,275 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
5,215 |
by arthuc01 Mon, 2014-04-21 06:47 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
5,210 |
by smlewis Mon, 2014-04-21 06:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
5 |
5,195 |
by rmoretti Tue, 2014-11-18 10:01 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
5 |
5,178 |
by banshee Tue, 2016-04-26 00:47 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
5,151 |
by smlewis Mon, 2014-04-21 06:47 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
4 |
5,144 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
6 |
5,128 |
by rmoretti Fri, 2018-08-24 11:59 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
5,127 |
by pepfolder Mon, 2014-04-21 06:47 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
5 |
5,125 |
by rpache Mon, 2014-04-21 06:47 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
1 |
5,121 |
by smlewis Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
5,091 |
by smlewis Mon, 2014-04-21 06:47 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
5 |
5,086 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
5,047 |
by Sandy Fri, 2015-08-07 15:49 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
8 |
5,042 |
by helenah Tue, 2020-11-03 04:33 |
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