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Rosetta 3 - General

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
5,129 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
5,121 by rmoretti
Thu, 2015-04-16 10:09
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
5,112 by shadrinams
Mon, 2018-02-12 11:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
5,101 by Anonymous
Mon, 2014-04-21 06:47
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
5,096 by robren
Mon, 2014-04-21 06:47
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
5,095 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40
7
5,053 by rmoretti
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,049 by yuvals
Sat, 2014-06-21 02:17
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
5,039 by einew
Mon, 2014-04-21 06:47
Normal topic what rotamer lib is used in rosetta3.5?
by Lindsay » Thu, 2014-02-06 16:11
6
5,032 by rmoretti
Fri, 2014-03-28 09:03
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
5,019 by cossio
Thu, 2015-01-29 11:50
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
4,960 by tevang
Mon, 2014-04-21 06:47
Normal topic two questions about "Prepare structures for use in Rosetta"
by Anonymous » Wed, 2012-06-06 08:13
6
4,953 by Anonymous
Mon, 2014-04-21 06:47
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
4,946 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
4,938 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
4,930 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
4,901 by jwillis
Sat, 2015-06-27 21:11
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
4,901 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
4,901 by arthuc01
Mon, 2014-04-21 06:47
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
4,868 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
4,864 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
4,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
4,859 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
4,849 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
4,841 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
4,840 by doranhen
Mon, 2014-04-21 06:47
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
4,829 by rmoretti
Mon, 2014-04-21 06:48
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
4,824 by fukamitka
Mon, 2014-04-21 06:48
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
4,821 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
4,799 by MRH
Mon, 2014-04-21 06:48
Normal topic rosetta 3.1-how to run parallel tasks?
by wtscrystal » Fri, 2009-11-06 03:23
4
4,797 by lqzhang
Mon, 2014-04-21 06:47
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
4,796 by smlewis
Sun, 2017-01-15 18:14
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
4,794 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
4,792 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
4,771 by rmoretti
Mon, 2014-04-21 06:48
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
4,769 by rmoretti
Tue, 2015-11-10 11:52
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
4,762 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
4,751 by smlewis
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
4,735 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
4,709 by Lindsay
Mon, 2014-04-21 06:48
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
4,689 by obdulia
Wed, 2016-07-13 09:11
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
4,671 by sunhwan
Mon, 2017-02-27 11:02
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
4,645 by Apiwat
Sat, 2014-02-08 01:41
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,605 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
4,604 by phanvy
Wed, 2014-10-08 01:42
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
4,599 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
4,572 by pepfolder
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
4,566 by smlewis
Mon, 2014-04-21 06:47
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
4,555 by rohi
Sun, 2020-07-26 17:03
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,541 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
4,537 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
4,536 by rmoretti
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
4,534 by albumns
Mon, 2014-04-21 06:47
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
4,523 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,508 by aroop
Mon, 2014-04-21 06:47
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
4,486 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
4,468 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
4,463 by jarod
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
4,459 by rosa
Mon, 2014-04-21 06:48
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,440 by rmoretti
Sat, 2014-05-17 14:10
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
4,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
4,432 by rmoretti
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
4,422 by zeynep
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
4,420 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
4,419 by byin
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
4,408 by rmoretti
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
4,406 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
4,403 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
4,385 by glemmon
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
4,372 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
4,364 by rmoretti
Thu, 2016-04-28 15:19
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
4,358 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
4,353 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
4,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
4,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,332 by smlewis
Mon, 2014-04-21 06:47
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
4,315 by weallen
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
4,314 by jurkm
Mon, 2014-04-21 06:47
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
4,274 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
4,271 by pholland
Mon, 2014-04-21 06:47
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
4,271 by rmoretti
Tue, 2021-02-09 11:52
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
4,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
4,250 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,246 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,234 by Sandy
Fri, 2015-08-07 15:49
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
4,230 by rmoretti
Tue, 2014-11-18 10:01
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
4,222 by smlewis
Mon, 2014-04-21 06:47
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
4,212 by attesor
Mon, 2014-04-21 06:47
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
4,210 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
4,206 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
4,206 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
4,192 by Karol
Thu, 2016-12-15 01:35
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
4,163 by rpache
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
4,153 by linucks
Wed, 2018-04-25 08:50
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
4,140 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
4,129 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
4,114 by rmoretti
Mon, 2014-04-21 06:48
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,108 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,104 by rmoretti
Sat, 2014-03-22 11:40
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
4,094 by banshee
Tue, 2016-04-26 00:47
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