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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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848 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,394 |
by matteoferla Sat, 2020-06-20 03:56 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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1,266 |
by windmill Thu, 2020-06-18 21:32 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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957 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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911 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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1,332 |
by hajar Wed, 2020-06-10 11:17 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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1,151 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
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2,036 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
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1,976 |
by nannemdp Tue, 2020-05-26 06:33 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
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1,716 |
by matteoferla Sat, 2020-05-23 03:09 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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1,005 |
by Kazu Wed, 2020-05-20 11:58 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
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2,997 |
by Kazu Mon, 2020-05-18 10:52 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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2,464 |
by matteoferla Thu, 2020-05-14 07:01 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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864 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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947 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,806 |
by jadolfbr Sun, 2020-05-03 19:38 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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3,830 |
by Awagner7 Tue, 2020-04-28 10:51 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
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1,892 |
by jalan Thu, 2020-04-23 05:19 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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955 |
by YuFei Wed, 2020-04-22 17:27 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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1,361 |
by matteoferla Tue, 2020-04-14 03:36 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
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2,184 |
by jalan Sun, 2020-04-12 08:01 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,704 |
by vmulligan Sat, 2020-04-11 17:40 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,296 |
by matteoferla Fri, 2020-04-10 02:40 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,451 |
by rmoretti Wed, 2020-04-01 10:10 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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2,102 |
by ylwang Tue, 2020-03-24 19:35 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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1,019 |
by matteoferla Sun, 2020-03-22 05:29 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,988 |
by matteoferla Sat, 2020-03-21 09:14 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
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5,481 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
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1,554 |
by smlewis Wed, 2020-03-04 07:40 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,323 |
by sheehajh Fri, 2020-02-21 12:41 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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907 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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2,057 |
by ac.research Fri, 2020-02-14 23:33 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,435 |
by renedominik Wed, 2020-02-12 06:16 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
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2,798 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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5,787 |
by ac.research Mon, 2020-02-10 08:19 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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1,577 |
by dfcoelho Tue, 2020-02-04 07:45 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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2,384 |
by matteoferla Wed, 2020-01-29 12:18 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,836 |
by j.schmue Tue, 2020-01-28 13:31 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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2,263 |
by G Mustafa Tue, 2020-01-21 06:04 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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1,545 |
by jkleman Thu, 2020-01-16 11:05 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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1,699 |
by jyy Mon, 2020-01-13 17:19 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,376 |
by matteoferla Wed, 2020-01-01 04:30 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
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3,000 |
by matteoferla Mon, 2019-12-23 07:24 |
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Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
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2,495 |
by denatured Fri, 2019-12-13 11:19 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
2 |
2,553 |
by smlewis Wed, 2019-12-04 13:07 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
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2,302 |
by ylwang Sat, 2019-11-23 06:26 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,182 |
by fgomes Fri, 2019-11-22 19:12 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,824 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,643 |
by matteoferla Wed, 2019-11-20 02:32 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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2,003 |
by dfcoelho Tue, 2019-11-19 10:16 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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2,192 |
by nleroy Fri, 2019-11-08 12:44 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
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3,452 |
by aaxx Wed, 2019-11-06 01:44 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,366 |
by rmoretti Mon, 2019-11-04 12:54 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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2,596 |
by rmoretti Tue, 2019-10-22 07:05 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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2,017 |
by ylwang Tue, 2019-10-08 18:34 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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3,069 |
by maruhuang Thu, 2019-09-26 18:55 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
0 |
954 |
by Danielsebas Tue, 2019-09-24 05:03 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,529 |
by rmoretti Wed, 2019-09-18 10:49 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,538 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
13 |
12,857 |
by ablakely7 Wed, 2019-09-11 15:33 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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1,609 |
by danpf Tue, 2019-09-03 10:39 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,790 |
by jadolfbr Thu, 2019-08-29 14:29 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
2,935 |
by decrSTL Tue, 2019-08-27 10:24 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,624 |
by rmoretti Mon, 2019-08-26 15:01 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
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1,574 |
by rmoretti Mon, 2019-08-26 15:00 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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1,440 |
by rmoretti Mon, 2019-08-26 14:52 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
2 |
2,480 |
by matteoferla Thu, 2019-08-22 05:39 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
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1,936 |
by matteoferla Wed, 2019-08-21 11:58 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
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2,417 |
by mao_x Thu, 2019-08-08 01:37 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
2 |
3,410 |
by ac.research Sat, 2019-08-03 08:12 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
1,214 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
1,495 |
by sayan500 Tue, 2019-07-30 22:20 |
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
2 |
3,150 |
by aminzia Fri, 2019-07-26 13:14 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
987 |
by yinasun Fri, 2019-07-26 02:17 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,440 |
by rmoretti Tue, 2019-07-09 15:59 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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1,735 |
by rmoretti Tue, 2019-07-09 15:57 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
1,677 |
by rmoretti Tue, 2019-07-09 15:48 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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10,617 |
by rmoretti Tue, 2019-07-09 12:50 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
1 |
1,884 |
by rmoretti Tue, 2019-07-09 12:31 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
7,855 |
by rmoretti Tue, 2019-07-09 10:29 |
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Rosetta3 Tutorials by smlewis » Fri, 2011-11-18 07:33 |
8 |
17,400 |
by rmoretti Tue, 2019-07-09 10:24 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
1 |
1,579 |
by rmoretti Mon, 2019-07-08 08:05 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,490 |
by smlewis Fri, 2019-06-28 13:56 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
2,465 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
3,204 |
by jadolfbr Wed, 2019-06-12 20:17 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
11 |
8,633 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,429 |
by smlewis Wed, 2019-05-29 13:21 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
2,771 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
4,327 |
by Jacky010 Tue, 2019-05-14 01:24 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
1,090 |
by BioPython Sun, 2019-05-12 20:07 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
1,512 |
by jeliazkov Fri, 2019-05-03 07:00 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
1,499 |
by connyyu Thu, 2019-04-18 03:26 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
4,791 |
by jadolfbr Tue, 2019-04-16 09:15 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
2,002 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
1 |
1,579 |
by vmulligan Mon, 2019-04-08 14:49 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
1,516 |
by rmoretti Wed, 2019-04-03 10:03 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
2,025 |
by rmoretti Wed, 2019-04-03 09:58 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
3,294 |
by rmoretti Wed, 2019-04-03 09:31 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,410 |
by rmoretti Sat, 2019-03-30 12:12 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
1,484 |
by rmoretti Sat, 2019-03-30 12:10 |
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