You are here

Rosetta 3 - General

Topic / Topic starter Repliessort ascending Views Last post
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
4,306 by pardave
Mon, 2014-04-21 06:47
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
11,491 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
4,596 by jwillis
Sat, 2015-02-07 20:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
4,966 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
4,287 by cannond
Wed, 2017-03-01 08:05
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
4,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
3,097 by matteoferla
Mon, 2019-12-23 07:24
Normal topic How to add uncommon metal elements into Rosetta and make it recognizable?
by JasonIsaac » Thu, 2023-02-09 00:08
4
1,260 by JasonIsaac
Sat, 2023-02-11 00:44
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
3,974 by zharmad
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
3,331 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,556 by almeida85
Thu, 2022-08-11 00:29
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
5,015 by rmoretti
Mon, 2015-03-30 14:43
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,800 by smlewis
Wed, 2016-07-13 23:41
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
4,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
4,517 by justin
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
6,816 by einew
Mon, 2014-04-21 06:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,763 by saxen
Mon, 2016-04-25 10:38
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
5,771 by phanvy
Wed, 2014-10-08 01:42
Normal topic Issues with rosetta numbering and keeping ligand when relaxing molecule.
by Wexter300 » Sun, 2024-04-28 14:37
4
476 by Wexter300
Tue, 2024-05-07 10:16
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
3,597 by rmoretti
Fri, 2018-08-03 11:39
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
1,360 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
3,766 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
3,406 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,713 by protein_fan
Fri, 2022-04-15 17:41
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
4,942 by rmoretti
Mon, 2014-04-21 06:47
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
3,084 by matteoferla
Sat, 2020-03-21 09:14
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
4,402 by bo
Mon, 2014-04-21 06:47
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
2,798 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
4,466 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
4,092 by smlewis
Wed, 2016-03-30 09:52
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
4,833 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
4,556 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
6,549 by kwak
Mon, 2014-04-21 06:47
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
2,752 by everyday847
Thu, 2021-04-01 11:59
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
4,079 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
3,100 by Kazu
Mon, 2020-05-18 10:52
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
4,370 by zlni
Mon, 2014-04-21 06:47
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
4
1,789 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
4,969 by smlewis
Mon, 2014-04-21 06:47
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
4,974 by rmoretti
Thu, 2016-09-08 10:56
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,881 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
4,724 by renedominik
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
5,186 by cossio
Thu, 2014-12-04 05:41
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
5,436 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
4,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
3,939 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
4,019 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
4,569 by IAndre
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
5,907 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
5,500 by rosa
Mon, 2014-04-21 06:48
Normal topic protein protein docking pipeline
by dzhao » Thu, 2012-07-19 06:25
4
6,025 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,892 by linucks
Mon, 2017-07-03 09:50
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
4,782 by rmoretti
Tue, 2015-01-06 09:58
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
5,566 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
7,495 by Filipe
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11
4
6,396 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
5,645 by albumns
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
5,267 by smlewis
Mon, 2014-04-21 06:47
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
6,508 by lanselibai
Fri, 2014-12-12 10:27
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
4,157 by zhiguang
Tue, 2016-11-15 12:27
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
5,130 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
5,507 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
4,851 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
6,162 by cossio
Thu, 2015-01-29 11:50
Normal topic total energy score of the pdb structure
by Lindsay » Tue, 2012-05-01 12:14
4
6,509 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
3,541 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
1,266 by Wexter300
Wed, 2023-01-25 12:34
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
4,756 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
4,794 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
7,651 by dgront
Mon, 2014-04-21 06:47
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
5,129 by rmoretti
Mon, 2014-04-21 06:47
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
3,504 by smlewis
Mon, 2018-12-31 08:58
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
4,458 by mdyini
Mon, 2014-04-21 06:47
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
4,573 by albumns
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
4,337 by japgar
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
4,762 by cheyuk
Sun, 2015-09-20 02:08
Normal topic Problems installing Rosetta
by S » Fri, 2010-09-03 01:04
4
6,217 by abdullah_ahmed
Mon, 2014-04-21 06:47
Normal topic Picking the correct model from a large set of decoys (30,000+)
by brspurri » Thu, 2012-04-26 15:37
4
5,748 by rmoretti
Mon, 2014-04-21 06:47
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
4,431 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
2,935 by smlewis
Wed, 2018-04-18 19:03
Normal topic I am a beginner in rosetta software and need help to build params file
by nais » Fri, 2011-03-18 13:37
3
7,061 by rmoretti
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
3,183 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
2,035 by rmoretti
Wed, 2021-03-17 13:52
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
3,417 by smlewis
Mon, 2014-04-21 06:47
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
3
2,089 by rmoretti
Tue, 2023-05-09 15:32
Normal topic undefined symbol: ZN9CifString12UnknownValueE error meaning?
by aniyaz » Wed, 2023-01-04 08:37
3
1,495 by aniyaz
Wed, 2023-01-11 01:24
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
4,534 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
4,474 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
5,435 by rmoretti
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
3,570 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,842 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
2,791 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
1,133 by rmoretti
Mon, 2023-01-30 08:04
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
4,366 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
4,269 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
5,741 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
4,569 by rmoretti
Mon, 2014-04-21 06:48
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
3,863 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
3,695 by jklett
Mon, 2014-04-21 06:47
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
1,745 by csvajda
Mon, 2022-03-07 07:46
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General