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Rosetta 3 - General

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Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57 		4
 5,232 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic How to relax only one domain of a protein and keep the rest of them fixed
by tevang » Sun, 2011-04-10 03:16 		14
 13,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13 		11
 9,109 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54 		13
 10,967 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21 		1
 3,009 by smlewis
Mon, 2014-04-21 06:47
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24 		15
 12,774 by saxen
Mon, 2014-04-21 06:47
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22 		3
 4,588 by smlewis
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11 		3
 3,519 by alejandro
Mon, 2014-04-21 06:47
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04 		7
 7,428 by monos_morpheus
Mon, 2014-04-21 06:47
Hot topic Is it possible to do alanine scanning in Rosetta 3.2.1.?
by monos_morpheus » Tue, 2011-04-12 02:36 		21
 20,843 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55 		1
 2,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40 		10
 8,940 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18 		4
 4,992 by smlewis
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00 		1
 3,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34 		3
 4,381 by dgront
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04 		1
 2,317 by IAndre
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18 		2
 5,003 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21 		4
 4,511 by lzx32
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08 		19
 19,263 by rmoretti
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47 		0
 1,640 by abdullah
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37 		1
 4,585 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26 		1
 2,836 by IAndre
Mon, 2014-04-21 06:47
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11 		7
 7,486 by jurkm
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10 		1
 2,452 by londonir
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08 		1
 2,202 by libai2098
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17 		3
 5,545 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35 		2
 3,892 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23 		3
 4,856 by jurkm
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21 		1
 2,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25 		10
 10,780 by jurkm
Mon, 2014-04-21 06:47
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47 		1
 3,448 by smlewis
Mon, 2014-04-21 06:47
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19 		6
 5,307 by rmoretti
Mon, 2014-04-21 06:47
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18 		1
 3,375 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49 		7
 8,248 by moehle
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01 		1
 2,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03 		1
 2,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define specific residues in alascan ?
by Park » Mon, 2011-06-13 19:56 		6
 6,844 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29 		3
 5,148 by pholland
Mon, 2014-04-21 06:47
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51 		1
 3,839 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18 		0
 2,019 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00 		3
 3,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18 		3
 4,132 by smlewis
Mon, 2014-04-21 06:47
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49 		1
 2,416 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3 Tutorials Beta Release
by smlewis » Fri, 2011-08-19 13:35 		7
 7,402 by smlewis
Mon, 2014-04-21 06:47
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49 		5
 4,690 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic solvation
by gw » Wed, 2011-08-31 17:14 		4
 4,423 by smlewis
Mon, 2014-04-21 06:47
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07 		4
 4,151 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26 		1
 3,410 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18 		4
 4,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14 		9
 8,904 by wangyr
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39 		10
 10,598 by jurkm
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07 		2
 4,093 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09 		2
 2,814 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fe3p Heme Iron Unrecognized Despite Loading Hem Params
by vsjasion » Fri, 2011-09-02 10:37 		6
 7,326 by tigerous
Mon, 2014-04-21 06:47
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54 		2
 3,140 by gw
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58 		1
 2,428 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28 		2
 3,171 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints
by jurkm » Mon, 2011-09-12 01:01 		6
 5,961 by jurkm
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59 		3
 3,703 by smlewis
Mon, 2014-04-21 06:47
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08 		2
 2,756 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24 		1
 2,478 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52 		3
 3,526 by IAndre
Mon, 2014-04-21 06:47
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58 		2
 2,573 by gipsonb
Mon, 2014-04-21 06:47
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36 		16
 13,367 by Basantab
Mon, 2014-04-21 06:47
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42 		1
 2,698 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to deal with Cu-as a ligand or as part of the receptor?
by hanypao » Fri, 2011-09-30 18:50 		7
 10,009 by rmoretti
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31 		1
 2,076 by fred
Mon, 2014-04-21 06:47
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40 		3
 3,619 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40 		0
 1,779 by jurkm
Mon, 2014-04-21 06:47
Normal topic Rosetta numbering with missing occupancies
by ShaneOConnor » Fri, 2011-10-07 16:18 		2
 3,474 by ShaneOConnor
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax using multiple cores on a single machine without mpi?
by JoG » Tue, 2011-10-25 00:40 		7
 11,426 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26 		2
 3,289 by jos
Mon, 2014-04-21 06:47
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11 		0
 2,714 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26 		2
 2,545 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01 		2
 3,825 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19 		6
 5,171 by byin
Mon, 2014-04-21 06:47
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01 		2
 3,185 by vsjasion
Mon, 2014-04-21 06:47
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16 		1
 2,961 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58 		5
 4,916 by rpache
Mon, 2014-04-21 06:47
Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23 		8
 7,950 by sacch
Mon, 2014-04-21 06:47
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52 		6
 6,967 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53 		1
 2,202 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15 		2
 3,133 by zhisheng
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19 		1
 3,965 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55 		2
 4,496 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01 		4
 7,094 by Filipe
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37 		2
 2,823 by smiruthi
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50 		5
 9,713 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17 		3
 3,628 by alejandro
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06 		1
 2,598 by smlewis
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45 		2
 2,985 by wangyr
Mon, 2014-04-21 06:47
Normal topic How does one prevent Rosetta from connecting two separate chains?
by jhbrown » Thu, 2011-12-15 14:08 		7
 6,665 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01 		6
 5,903 by Anonymous
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49 		1
 2,332 by rmoretti
Mon, 2014-04-21 06:47
Hot topic Re: Multigraft
by bharat_46010 » Wed, 2011-12-07 17:24 		35
 30,604 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20 		9
 8,305 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39 		2
 2,858 by jhbrown
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23 		1
 2,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44 		4
 4,223 by justin
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19 		2
 2,998 by alejandro
Mon, 2014-04-21 06:47
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