You are here

Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,872 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
920 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,419 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
897 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,731 by matteoferla
Tue, 2020-06-23 10:58
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
864 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,420 by matteoferla
Sat, 2020-06-20 03:56
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
1,283 by windmill
Thu, 2020-06-18 21:32
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
977 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
931 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
1,357 by hajar
Wed, 2020-06-10 11:17
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
1,174 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
2,061 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
2,024 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,750 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
1,027 by Kazu
Wed, 2020-05-20 11:58
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
3,038 by Kazu
Mon, 2020-05-18 10:52
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
2,501 by matteoferla
Thu, 2020-05-14 07:01
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
876 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
967 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,840 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
3,870 by Awagner7
Tue, 2020-04-28 10:51
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,926 by jalan
Thu, 2020-04-23 05:19
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
974 by YuFei
Wed, 2020-04-22 17:27
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
1,386 by matteoferla
Tue, 2020-04-14 03:36
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
2,215 by jalan
Sun, 2020-04-12 08:01
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,736 by vmulligan
Sat, 2020-04-11 17:40
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
1,319 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
1,474 by rmoretti
Wed, 2020-04-01 10:10
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
2,142 by ylwang
Tue, 2020-03-24 19:35
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
1,033 by matteoferla
Sun, 2020-03-22 05:29
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
3,030 by matteoferla
Sat, 2020-03-21 09:14
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
5,575 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,587 by smlewis
Wed, 2020-03-04 07:40
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
1,342 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
924 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
2,087 by ac.research
Fri, 2020-02-14 23:33
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,459 by renedominik
Wed, 2020-02-12 06:16
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,839 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
5,892 by ac.research
Mon, 2020-02-10 08:19
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,601 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
2,439 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,864 by j.schmue
Tue, 2020-01-28 13:31
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
2,308 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,568 by jkleman
Thu, 2020-01-16 11:05
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,725 by jyy
Mon, 2020-01-13 17:19
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,406 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
3,052 by matteoferla
Mon, 2019-12-23 07:24
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
2,554 by denatured
Fri, 2019-12-13 11:19
Normal topic Performace Benchmarking
by Tushar Kush » Wed, 2019-12-04 02:50
2
2,611 by smlewis
Wed, 2019-12-04 13:07
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
2,338 by ylwang
Sat, 2019-11-23 06:26
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
1,206 by fgomes
Fri, 2019-11-22 19:12
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
1,859 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
3,711 by matteoferla
Wed, 2019-11-20 02:32
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
2,034 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
2,220 by nleroy
Fri, 2019-11-08 12:44
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
3,496 by aaxx
Wed, 2019-11-06 01:44
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,387 by rmoretti
Mon, 2019-11-04 12:54
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
2,633 by rmoretti
Tue, 2019-10-22 07:05
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
2,046 by ylwang
Tue, 2019-10-08 18:34
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
3,118 by maruhuang
Thu, 2019-09-26 18:55
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
0
967 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,548 by rmoretti
Wed, 2019-09-18 10:49
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
1,558 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
13,038 by ablakely7
Wed, 2019-09-11 15:33
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,632 by danpf
Tue, 2019-09-03 10:39
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,842 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
2,993 by decrSTL
Tue, 2019-08-27 10:24
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
1,661 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,599 by rmoretti
Mon, 2019-08-26 15:00
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
1,457 by rmoretti
Mon, 2019-08-26 14:52
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
2,522 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,968 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
2,471 by mao_x
Thu, 2019-08-08 01:37
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
3,467 by ac.research
Sat, 2019-08-03 08:12
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
0
1,236 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,511 by sayan500
Tue, 2019-07-30 22:20
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
3,178 by aminzia
Fri, 2019-07-26 13:14
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
1,004 by yinasun
Fri, 2019-07-26 02:17
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,458 by rmoretti
Tue, 2019-07-09 15:59
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,761 by rmoretti
Tue, 2019-07-09 15:57
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,705 by rmoretti
Tue, 2019-07-09 15:48
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
10,703 by rmoretti
Tue, 2019-07-09 12:50
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,910 by rmoretti
Tue, 2019-07-09 12:31
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
7,917 by rmoretti
Tue, 2019-07-09 10:29
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
8
17,519 by rmoretti
Tue, 2019-07-09 10:24
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,605 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,514 by smlewis
Fri, 2019-06-28 13:56
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
2,498 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
3,267 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
8,754 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
1,448 by smlewis
Wed, 2019-05-29 13:21
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
2,854 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
4,396 by Jacky010
Tue, 2019-05-14 01:24
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
0
1,104 by BioPython
Sun, 2019-05-12 20:07
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
1,534 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,520 by connyyu
Thu, 2019-04-18 03:26
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
4,871 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
2,025 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,597 by vmulligan
Mon, 2019-04-08 14:49
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General