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Rosetta 3 - General
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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1,842 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
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1,981 |
by rmoretti Mon, 2016-09-05 09:39 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
7 |
7,572 |
by rmoretti Wed, 2015-01-21 08:43 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,228 |
by einew Mon, 2014-04-21 06:47 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,284 |
by rmoretti Thu, 2018-06-28 14:22 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
15 |
11,982 |
by saxen Mon, 2014-04-21 06:47 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
12 |
12,722 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
8,246 |
by xpzhang Mon, 2014-04-21 06:47 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
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2,778 |
by khanhbinh Mon, 2014-04-21 06:47 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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1,460 |
by rmoretti Wed, 2017-09-06 08:47 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,380 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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947 |
by fgomes Fri, 2019-11-22 19:12 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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661 |
by jadolfbr Sat, 2022-02-12 23:16 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,348 |
by aaj Mon, 2016-02-22 07:50 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
5 |
4,053 |
by salvatta Mon, 2018-09-10 10:04 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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1,894 |
by sid Mon, 2014-04-21 06:47 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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1,781 |
by rmoretti Thu, 2015-04-30 07:13 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
2 |
2,145 |
by brspurri Thu, 2020-08-20 13:22 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,026 |
by smlewis Mon, 2014-04-21 06:47 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
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2,661 |
by aroop Mon, 2014-04-21 06:47 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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4,137 |
by lanselibai Tue, 2014-12-16 10:48 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
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2,031 |
by smlewis Mon, 2014-04-21 06:47 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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727 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
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2,475 |
by qlj Thu, 2014-03-06 22:20 |
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Does Rosetta 3.1 have the 9999 limitation? by wtscrystal » Sat, 2009-11-07 01:18 |
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1,972 |
by smlewis Mon, 2014-04-21 06:47 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
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4,871 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
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1,872 |
by ylwang Sat, 2019-11-23 06:26 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
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4,024 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
3 |
3,852 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
4,923 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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2,792 |
by Lindsay Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
10 |
8,614 |
by rmoretti Thu, 2017-02-02 08:32 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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1,888 |
by smlewis Mon, 2014-04-21 06:47 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,321 |
by rmoretti Mon, 2016-11-14 14:21 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
6 |
5,080 |
by Anonymous Mon, 2014-04-21 06:47 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
2,692 |
by Lindsay Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,310 |
by rmoretti Mon, 2014-04-21 06:48 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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4,592 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
5 |
3,712 |
by smlewis Tue, 2018-07-03 11:22 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
5 |
4,841 |
by linucks Wed, 2018-04-25 08:50 |
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
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1,845 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
6,727 |
by Filipe Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
6 |
10,413 |
by rmoretti Mon, 2014-04-21 06:47 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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3,677 |
by rmoretti Fri, 2014-05-23 08:09 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
9 |
9,602 |
by lanselibai Wed, 2014-10-15 01:41 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,447 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
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2,406 |
by gipsonb Mon, 2014-04-21 06:47 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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524 |
by mb0261 Mon, 2022-09-26 07:50 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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329 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
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2,160 |
by smlewis Mon, 2014-04-21 06:47 |
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Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
1 |
1,612 |
by rmoretti Wed, 2016-06-15 16:06 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
928 |
by bazzoli Wed, 2018-10-10 01:59 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
3,873 |
by bo Mon, 2014-04-21 06:47 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
4 |
5,369 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
0 |
547 |
by rohi Fri, 2021-06-25 10:29 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
0 |
599 |
by cryosky Sun, 2021-09-26 13:24 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
1 |
1,052 |
by rmoretti Tue, 2021-02-09 11:30 |
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Error Atom_::dihedral_between_bonded_children by abiadak » Mon, 2012-07-30 06:34 |
2 |
3,571 |
by abiadak Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,098 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
5,059 |
by phanvy Wed, 2014-10-08 01:42 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
10,687 |
by smlewis Mon, 2014-04-21 06:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
10 |
8,349 |
by smlewis Mon, 2014-04-21 06:47 |
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Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
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1,606 |
by rmoretti Thu, 2016-04-28 14:47 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,107 |
by rmoretti Sat, 2017-12-16 12:19 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,338 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
1 |
1,393 |
by jyy Mon, 2020-01-13 17:19 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
1,188 |
by wentlewi Sat, 2020-05-16 08:06 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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117 |
by Brian Wiley Sat, 2023-02-04 23:43 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
1 |
1,097 |
by rmoretti Mon, 2019-11-04 12:54 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
1 |
1,486 |
by rmoretti Fri, 2020-11-13 12:58 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
1,298 |
by sayan500 Tue, 2019-07-30 22:20 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,517 |
by jalan Thu, 2020-04-23 05:19 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,338 |
by matteoferla Sat, 2020-05-23 03:09 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,386 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
0 |
230 |
by almeida85 Thu, 2022-11-17 01:04 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
1 |
2,106 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
1 |
1,147 |
by renedominik Wed, 2020-02-12 06:16 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,708 |
by joseph Mon, 2014-04-21 06:47 |
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Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
1 |
2,139 |
by smlewis Sun, 2016-01-24 03:24 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
0 |
819 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
3,953 |
by mgrom92 Wed, 2016-03-23 16:45 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
7 |
7,884 |
by smlewis Mon, 2014-04-21 06:47 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
1 |
1,145 |
by rmoretti Tue, 2021-02-09 12:19 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
7 |
7,027 |
by rmoretti Tue, 2015-10-27 09:11 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,224 |
by inder Mon, 2014-04-21 06:47 |
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Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
1 |
1,920 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
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error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
1 |
2,457 |
by jtmacd Mon, 2014-04-21 06:47 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
2,683 |
by lvtun Mon, 2014-04-21 06:47 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
1 |
1,747 |
by jadolfbr Wed, 2017-11-01 10:11 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
5 |
4,005 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,044 |
by jrcf Fri, 2016-02-12 16:41 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
4,206 |
by rmoretti Wed, 2015-08-12 15:03 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
1,598 |
by sgaray Fri, 2021-06-25 11:26 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
0 |
1,135 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
4 |
3,862 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,440 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
4 |
220 |
by Wexter300 Wed, 2023-01-25 12:34 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
2 |
3,118 |
by jos Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
8,512 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
14 |
13,162 |
by phanvy Wed, 2014-06-18 07:50 |
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