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Rosetta 3 - General

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Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
1,611 by ctaylor
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
1,617 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
1,618 by rmoretti
Wed, 2019-04-03 10:03
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,619 by rmoretti
Wed, 2019-09-18 10:49
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,620 by tevang
Mon, 2014-04-21 06:47
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,624 by IgaK
Mon, 2014-04-21 06:47
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
1,626 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
1,633 by justin
Mon, 2014-04-21 06:47
Normal topic undefined symbol: ZN9CifString12UnknownValueE error meaning?
by aniyaz » Wed, 2023-01-04 08:37
3
1,639 by aniyaz
Wed, 2023-01-11 01:24
Normal topic how does rosetta handle hydrogens?
by patcD » Tue, 2021-08-31 00:48
2
1,642 by patcD
Wed, 2021-09-01 06:54
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,644 by rmoretti
Mon, 2018-10-08 11:20
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,647 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,650 by almeida85
Thu, 2022-08-11 00:29
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,651 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Rosetta Double changing mmCIF chain ID
by Victor Tobiasson » Thu, 2021-05-13 07:57
2
1,652 by Victor Tobiasson
Thu, 2021-05-13 08:33
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
1,653 by rmoretti
Thu, 2018-02-22 09:29
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,654 by jkleman
Thu, 2020-01-16 11:05
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,656 by vmulligan
Mon, 2019-04-08 14:49
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,662 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,662 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,665 by vasek
Mon, 2014-04-21 06:48
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
1,672 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,672 by vmulligan
Wed, 2021-04-28 14:20
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
0
1,673 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,673 by rmoretti
Mon, 2019-08-26 15:00
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,676 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,676 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,679 by smlewis
Wed, 2020-03-04 07:40
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,681 by smlewis
Thu, 2018-06-28 13:34
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,685 by DanielK
Mon, 2014-04-21 06:47
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,688 by Loki01
Wed, 2017-12-13 05:27
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
0
1,690 by sdh
Mon, 2014-04-21 06:47
Normal topic de novo protein prediction
by pci112 » Tue, 2021-03-23 10:13
2
1,694 by pci112
Thu, 2021-03-25 01:44
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
1,694 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,695 by myang
Mon, 2014-04-21 06:47
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
1,707 by abhishek
Mon, 2014-04-21 06:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,708 by rmoretti
Thu, 2018-06-28 14:22
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,709 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,716 by danpf
Tue, 2019-09-03 10:39
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
1,725 by ac.research
Sat, 2017-11-18 06:54
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
1,730 by amystevens
Thu, 2021-09-30 14:18
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
1,732 by smlewis
Tue, 2018-08-07 16:59
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,740 by jeliazkov
Tue, 2017-07-18 09:51
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
1,742 by rmoretti
Mon, 2019-08-26 15:01
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,747 by rmoretti
Tue, 2021-02-09 09:37
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
1,753 by ssrb
Tue, 2022-07-05 11:07
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
1,761 by rmoretti
Wed, 2018-11-21 14:01
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,761 by rmoretti
Mon, 2018-03-19 09:08
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,771 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,776 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic RosettaDock - protonation states
by LWilliamson » Tue, 2023-08-15 08:15
6
1,776 by nannemdp
Thu, 2023-08-24 08:21
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,777 by abdullah
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
1,781 by JW_24
Wed, 2020-09-23 01:27
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,781 by rmoretti
Tue, 2019-07-09 15:48
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
1,785 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,793 by matteoferla
Thu, 2021-06-03 08:24
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,795 by DanielK
Mon, 2014-04-21 06:47
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
1,797 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,803 by jyy
Mon, 2020-01-13 17:19
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,805 by protein_fan
Fri, 2022-04-15 17:41
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,806 by rmoretti
Wed, 2018-11-21 14:14
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,812 by rmoretti
Mon, 2018-02-12 09:39
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,816 by rmoretti
Tue, 2018-01-30 08:29
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
0
1,819 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,819 by rmoretti
Wed, 2017-09-06 08:47
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,820 by rmoretti
Wed, 2018-08-01 16:04
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
1,825 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,826 by jkleman
Sat, 2018-04-14 10:55
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,826 by vmulligan
Sat, 2020-04-11 17:40
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
1,832 by rmoretti
Wed, 2021-02-03 14:45
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,837 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Controlling Input in the Tutorial
by Smbat » Wed, 2020-07-29 22:41
2
1,839 by Smbat
Thu, 2020-07-30 03:07
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,843 by matteoferla
Tue, 2020-06-23 10:58
Normal topic Why does the sum of the per-residue total energy not match the whole score?
by matteoferla » Fri, 2021-07-09 08:36
2
1,843 by matteoferla
Mon, 2021-07-12 02:23
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,844 by matteoferla
Sat, 2020-05-23 03:09
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,847 by smlewis
Wed, 2016-08-24 07:23
Normal topic I Need Help on Validation for a Ligand Docking Experiment.
by tbelec » Sat, 2021-03-20 13:27
1
1,854 by matteoferla
Mon, 2021-03-22 08:29
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,864 by Karol
Mon, 2016-08-29 05:27
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,871 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
1,873 by csvajda
Mon, 2022-03-07 07:46
Normal topic Ligand being read as part of protein structure
by MarkusAurelius » Thu, 2021-04-01 11:00
2
1,878 by MarkusAurelius
Fri, 2021-04-02 11:44
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,881 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Issues with angle Constraints during Docking
by LeonhardJS » Thu, 2021-01-28 04:40
2
1,887 by LeonhardJS
Fri, 2021-01-29 01:12
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,892 by smlewis
Wed, 2017-03-22 14:02
Normal topic where is PyIgClassfiy.py ?
by mxp » Tue, 2020-07-07 23:57
2
1,893 by mxp
Wed, 2020-07-08 23:25
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
1,902 by rmoretti
Tue, 2023-05-16 07:10
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,912 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,912 by possu
Tue, 2016-08-30 16:57
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
1,914 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,915 by rmoretti
Tue, 2016-07-12 08:48
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,922 by rmoretti
Mon, 2018-02-05 15:44
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,929 by joseph
Mon, 2014-04-21 06:47
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,934 by jurkm
Mon, 2014-04-21 06:47
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,936 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
1,937 by rohi
Tue, 2020-10-13 09:15
Normal topic 4mer 6mer fragment database
by bjharris » Wed, 2020-09-09 15:12
2
1,939 by bjharris
Wed, 2020-09-09 20:04
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,940 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,943 by matteoferla
Thu, 2018-09-13 06:21
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,951 by rmoretti
Thu, 2016-09-08 07:56
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,951 by rmoretti
Thu, 2017-02-02 08:52
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