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Rosetta 3 - General

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Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
4,089 by rmoretti
Mon, 2014-04-21 06:47
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
4,079 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
4,033 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
4,013 by nitroamos
Mon, 2014-04-21 06:47
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
4,012 by cannond
Wed, 2017-03-08 03:00
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
3,994 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,986 by knutjbj
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,980 by smlewis
Mon, 2014-04-21 06:47
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,977 by rmoretti
Mon, 2015-03-30 14:43
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
3,961 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
3,930 by lzx32
Mon, 2014-04-21 06:47
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
3,913 by smlewis
Tue, 2016-08-30 13:47
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
3,910 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
3,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
3,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
3,899 by cossio
Thu, 2014-12-04 05:41
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
3,881 by gw
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
3,874 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
3,872 by dgront
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
3,858 by rmoretti
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
3,851 by albumns
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
3,841 by smlewis
Mon, 2014-04-21 06:47
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
3,835 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
3,829 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
3,818 by pardave
Mon, 2014-04-21 06:47
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,817 by xujc
Mon, 2014-04-21 06:47
Normal topic covalent ligand docking in Rosetta
by rohi » Mon, 2021-06-07 06:39
12
3,817 by matteoferla
Wed, 2021-07-14 04:03
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
3,814 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
3,808 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,807 by phanvy
Thu, 2014-10-16 18:54
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
3,801 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
3,798 by renedominik
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,788 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
3,784 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
3,782 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
3,778 by rmoretti
Tue, 2015-01-06 09:58
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
3,766 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,762 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
3,750 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,725 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
3,706 by w107kdk
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
3,703 by cheyuk
Sun, 2015-09-20 02:08
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
3,703 by albumns
Mon, 2014-04-21 06:47
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
3,688 by ac.research
Mon, 2020-02-10 08:19
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
3,687 by lanselibai
Tue, 2014-12-16 10:48
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
3,686 by smlewis
Wed, 2016-07-13 23:41
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
3,677 by IAndre
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
3,663 by rmoretti
Mon, 2014-04-21 06:48
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
3,660 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
3,657 by zaldini
Wed, 2015-01-07 20:35
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
3,656 by smlewis
Mon, 2014-04-21 06:47
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
3,656 by matteoferla
Sat, 2020-09-12 03:02
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,646 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
3,641 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
3,634 by saxen
Mon, 2016-04-25 10:38
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
3,634 by zaldini
Fri, 2015-01-02 05:38
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
3,632 by jtmacd
Mon, 2014-04-21 06:47
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,630 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
3,624 by justin
Mon, 2014-04-21 06:47
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
3,614 by einew
Mon, 2014-04-21 06:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
3,611 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
3,603 by rmoretti
Thu, 2017-08-03 09:01
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
3,602 by pachecoj
Wed, 2017-03-29 12:32
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
3,602 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
3,591 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
3,585 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
3,583 by smlewis
Mon, 2014-04-21 06:47
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
3,576 by mdyini
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
3,556 by smlewis
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
3,555 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
3,554 by jwillis
Sat, 2015-02-07 20:40
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,549 by rmoretti
Tue, 2015-09-08 10:18
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
3,549 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,545 by smlewis
Mon, 2014-04-21 06:47
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
3,542 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Rosetta dock parallel
by mahajanr » Tue, 2010-06-01 16:04
3
3,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,541 by rmoretti
Mon, 2014-04-21 06:48
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
3,535 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
3,530 by rmoretti
Mon, 2014-04-21 06:47
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
3,528 by bo
Mon, 2014-04-21 06:47
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
3,513 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
3,505 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,491 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,491 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,490 by rmoretti
Wed, 2015-01-21 10:05
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
3,474 by cneale
Fri, 2014-03-21 18:13
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
3,472 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
3,465 by vanita
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,458 by monica0569
Mon, 2014-04-21 06:47
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
3,457 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
3,455 by smlewis
Mon, 2014-04-21 06:47
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
3,453 by ac.research
Mon, 2017-09-04 16:43
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
3,452 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
3,448 by japgar
Mon, 2014-04-21 06:47
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
3,447 by smlewis
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
3,440 by pardave
Mon, 2014-04-21 06:47
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,432 by rmoretti
Mon, 2015-03-30 16:58
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
3,431 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,430 by rmoretti
Fri, 2014-05-23 08:09
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
3,428 by aneamtu
Thu, 2018-01-18 00:56
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