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Rosetta 3 - General
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Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
4,089 |
by rmoretti Mon, 2014-04-21 06:47 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
4,079 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
3 |
4,033 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
3 |
4,013 |
by nitroamos Mon, 2014-04-21 06:47 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
5 |
4,012 |
by cannond Wed, 2017-03-08 03:00 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
3,994 |
by jadolfbr Mon, 2014-04-21 06:47 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
2 |
3,986 |
by knutjbj Mon, 2014-04-21 06:47 |
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Rosetta releases and revision numbers by ShaneOConnor » Thu, 2011-11-17 13:55 |
2 |
3,980 |
by smlewis Mon, 2014-04-21 06:47 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
4 |
3,977 |
by rmoretti Mon, 2015-03-30 14:43 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
5 |
3,961 |
by pachecoj Sat, 2014-08-09 06:33 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
4 |
3,930 |
by lzx32 Mon, 2014-04-21 06:47 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
3,913 |
by smlewis Tue, 2016-08-30 13:47 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
3 |
3,910 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
5 |
3,907 |
by smlewis Mon, 2014-04-21 06:47 |
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Question regarding Mlipo score by DanielK » Tue, 2012-05-29 02:04 |
4 |
3,907 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
4 |
3,899 |
by cossio Thu, 2014-12-04 05:41 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
4 |
3,881 |
by gw Mon, 2014-04-21 06:47 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
5 |
3,874 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
3 |
3,872 |
by dgront Mon, 2014-04-21 06:47 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
3,858 |
by rmoretti Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
6 |
3,851 |
by albumns Mon, 2014-04-21 06:47 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
3,841 |
by smlewis Mon, 2014-04-21 06:47 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
3,835 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
5 |
3,829 |
by w107kdk Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
4 |
3,818 |
by pardave Mon, 2014-04-21 06:47 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
3,817 |
by xujc Mon, 2014-04-21 06:47 |
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covalent ligand docking in Rosetta by rohi » Mon, 2021-06-07 06:39 |
12 |
3,817 |
by matteoferla Wed, 2021-07-14 04:03 |
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restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
4 |
3,814 |
by rmoretti Thu, 2016-09-08 10:56 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
4 |
3,808 |
by smlewis Mon, 2014-04-21 06:47 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
3,807 |
by phanvy Thu, 2014-10-16 18:54 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
3 |
3,801 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparing scores by renedominik » Mon, 2012-02-27 05:21 |
4 |
3,798 |
by renedominik Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
3,788 |
by Lindsay Mon, 2014-04-21 06:48 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
4 |
3,784 |
by Martin Floor Mon, 2014-04-21 06:47 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
4 |
3,782 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
4 |
3,778 |
by rmoretti Tue, 2015-01-06 09:58 |
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solvation by gw » Wed, 2011-08-31 17:14 |
4 |
3,766 |
by smlewis Mon, 2014-04-21 06:47 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
3 |
3,762 |
by smlewis Mon, 2014-04-21 06:47 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
3,750 |
by rmoretti Wed, 2015-08-12 15:03 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
3,725 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
4 |
3,706 |
by w107kdk Mon, 2014-04-21 06:47 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
3,703 |
by cheyuk Sun, 2015-09-20 02:08 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
4 |
3,703 |
by albumns Mon, 2014-04-21 06:47 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
8 |
3,688 |
by ac.research Mon, 2020-02-10 08:19 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
3,687 |
by lanselibai Tue, 2014-12-16 10:48 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
3,686 |
by smlewis Wed, 2016-07-13 23:41 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
3,677 |
by IAndre Mon, 2014-04-21 06:47 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
3,663 |
by rmoretti Mon, 2014-04-21 06:48 |
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unknown constraint function type: AtomPair ? by jiongzhang » Sun, 2012-07-15 02:13 |
4 |
3,660 |
by jiongzhang Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
4 |
3,657 |
by zaldini Wed, 2015-01-07 20:35 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
3 |
3,656 |
by smlewis Mon, 2014-04-21 06:47 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
11 |
3,656 |
by matteoferla Sat, 2020-09-12 03:02 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
3,646 |
by jadolfbr Mon, 2014-04-21 21:05 |
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Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
3,641 |
by mgrom92 Wed, 2016-03-23 16:45 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
3,634 |
by saxen Mon, 2016-04-25 10:38 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
4 |
3,634 |
by zaldini Fri, 2015-01-02 05:38 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
2 |
3,632 |
by jtmacd Mon, 2014-04-21 06:47 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
3,630 |
by rmoretti Mon, 2014-04-21 06:48 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
4 |
3,624 |
by justin Mon, 2014-04-21 06:47 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
3,614 |
by einew Mon, 2014-04-21 06:47 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
6 |
3,611 |
by rmoretti Fri, 2018-08-24 11:59 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
5 |
3,603 |
by rmoretti Thu, 2017-08-03 09:01 |
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Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
5 |
3,602 |
by pachecoj Wed, 2017-03-29 12:32 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
1 |
3,602 |
by smlewis Mon, 2014-04-21 06:47 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
3 |
3,591 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
4 |
3,585 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
3 |
3,583 |
by smlewis Mon, 2014-04-21 06:47 |
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core.scoring.rms_util: WARNING: CA_rmsd out of range... by mdyini » Sat, 2012-02-25 16:14 |
4 |
3,576 |
by mdyini Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
3 |
3,556 |
by smlewis Mon, 2014-04-21 06:47 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
3 |
3,555 |
by smlewis Mon, 2014-04-21 06:47 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
4 |
3,554 |
by jwillis Sat, 2015-02-07 20:40 |
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Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
2 |
3,549 |
by rmoretti Tue, 2015-09-08 10:18 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
3,549 |
by logandonaldson Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
3,545 |
by smlewis Mon, 2014-04-21 06:47 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
3,542 |
by rmoretti Mon, 2015-02-09 11:21 |
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Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
3 |
3,542 |
by smlewis Mon, 2014-04-21 06:47 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
3,541 |
by rmoretti Mon, 2014-04-21 06:48 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
4 |
3,535 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
3 |
3,530 |
by rmoretti Mon, 2014-04-21 06:47 |
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enzdes error by bo » Tue, 2012-08-21 09:12 |
4 |
3,528 |
by bo Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
1 |
3,513 |
by smlewis Mon, 2014-04-21 06:47 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
5 |
3,505 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
3,491 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
1 |
3,491 |
by rmoretti Mon, 2014-04-21 06:48 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
3,490 |
by rmoretti Wed, 2015-01-21 10:05 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
3 |
3,474 |
by cneale Fri, 2014-03-21 18:13 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
3 |
3,472 |
by jadolfbr Mon, 2014-04-21 06:47 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
3 |
3,465 |
by vanita Mon, 2014-04-21 06:47 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
3 |
3,458 |
by monica0569 Mon, 2014-04-21 06:47 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
2 |
3,457 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
2 |
3,455 |
by smlewis Mon, 2014-04-21 06:47 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
4 |
3,453 |
by ac.research Mon, 2017-09-04 16:43 |
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Radius of Gyration by ctaylor » Mon, 2009-09-21 12:45 |
2 |
3,452 |
by ctaylor Mon, 2014-04-21 06:47 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
4 |
3,448 |
by japgar Mon, 2014-04-21 06:47 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
3,447 |
by smlewis Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
4 |
3,440 |
by pardave Mon, 2014-04-21 06:47 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
3 |
3,432 |
by rmoretti Mon, 2015-03-30 16:58 |
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using defined WATERS in PACKING by ast » Wed, 2012-01-11 09:11 |
4 |
3,431 |
by smlewis Mon, 2014-04-21 06:47 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,430 |
by rmoretti Fri, 2014-05-23 08:09 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
2 |
3,428 |
by aneamtu Thu, 2018-01-18 00:56 |
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