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Rosetta 3 - General

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Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,632 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
3,454 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
2,314 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,565 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
1,329 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
1
933 by aneeqh
Fri, 2022-09-02 13:36
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
2,176 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
2,012 by rmoretti
Fri, 2015-07-03 13:51
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,478 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,421 by IAndre
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
2,022 by smlewis
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,348 by rmoretti
Mon, 2014-12-15 02:37
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,146 by rmoretti
Thu, 2016-04-28 15:49
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,506 by connyyu
Thu, 2019-04-18 03:26
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,376 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
1,282 by rmoretti
Wed, 2021-06-23 02:17
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
2,451 by smlewis
Mon, 2014-04-21 06:47
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
2,146 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,912 by amelie
Tue, 2014-09-30 14:29
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,618 by Loki01
Wed, 2017-12-13 05:27
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,179 by fred
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
2,202 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,711 by rmoretti
Wed, 2018-11-21 14:14
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
778 by ajasja
Mon, 2022-05-23 07:19
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,541 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,186 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
3,043 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,489 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
2,104 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
3,774 by smlewis
Tue, 2017-04-18 08:33
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
1,031 by lanselibai
Wed, 2021-06-23 14:53
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
837 by rmoretti
Tue, 2022-09-06 08:13
Normal topic Filters saying atom type does not exist on residue
by mdm95 » Mon, 2024-03-04 15:13
1
164 by mdm95
Tue, 2024-03-05 14:05
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
2,026 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
2,144 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,932 by smlewis
Wed, 2017-06-28 06:59
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,587 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
1,217 by zivben
Sat, 2021-07-31 08:16
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,651 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
2,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,494 by achambe
Wed, 2016-01-13 10:46
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,729 by rmoretti
Tue, 2015-07-14 15:27
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,308 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,280 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,970 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
2,431 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,540 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,921 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,659 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
2,306 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,974 by reddybg
Mon, 2014-04-21 06:47
Normal topic Predicting conformations of mutated residues
by Delfosse57 » Tue, 2023-08-22 12:26
1
413 by rmoretti
Wed, 2023-08-23 08:26
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,575 by rmoretti
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,196 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
2,078 by nawsad
Wed, 2014-06-25 13:26
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
2,226 by rmoretti
Wed, 2015-09-02 12:48
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,768 by smlewis
Wed, 2016-08-24 07:23
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,382 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
1,112 by rmoretti
Tue, 2021-02-09 10:29
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
3,121 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,565 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,978 by smlewis
Tue, 2018-06-19 10:31
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,833 by smlewis
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,425 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
3,113 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,804 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
3,327 by rmoretti
Wed, 2019-04-03 09:31
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,836 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
1,150 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,310 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
2,058 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
2,061 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
2,106 by rmoretti
Mon, 2016-11-14 14:26
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
1,233 by sia
Tue, 2022-07-05 05:47
Normal topic rosie github log in
by YUANXU » Tue, 2023-04-25 20:13
1
505 by Sergey
Thu, 2023-04-27 12:03
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
1,063 by gezmi
Sat, 2021-11-06 15:26
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
2,248 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
2,259 by rmoretti
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
2,098 by rmoretti
Fri, 2015-07-03 13:14
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,585 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
2,077 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
1,518 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,445 by smlewis
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,672 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
2,228 by yuvals
Mon, 2014-10-06 15:02
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
1,670 by rmoretti
Wed, 2018-11-21 14:01
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
729 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,728 by rmoretti
Wed, 2018-08-01 16:04
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
1,454 by rmoretti
Tue, 2021-02-09 12:19
Normal topic Calculating shape complementarity of ligand and protein
by varunmc99 » Tue, 2023-01-17 11:29
1
689 by rmoretti
Mon, 2023-02-06 14:42
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
2,365 by smlewis
Mon, 2014-04-21 06:47
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,094 by smlewis
Mon, 2014-04-21 06:47
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
2,397 by smlewis
Mon, 2014-04-21 06:47
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
1,436 by smlewis
Wed, 2019-05-29 13:21
Normal topic Residue outside res_map range
by to-qinbin@163.com » Sat, 2022-09-10 01:56
1
1,149 by rmoretti
Mon, 2022-09-12 07:01
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
2,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
2,065 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
2,134 by rmoretti
Thu, 2018-06-28 14:28
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