You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
1 |
788 |
by zivben Sat, 2021-07-31 08:16 |
|
|
Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
1 |
2,141 |
by achambe Wed, 2016-01-13 10:46 |
|
|
Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
1,961 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
1 |
2,350 |
by rmoretti Tue, 2015-07-14 15:27 |
|
|
Rosetta movie. by exchhattu » Mon, 2009-09-14 21:02 |
1 |
2,012 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
symmetric Docking- TRIMER in Rosetta 3.4 ? by sdg_lab » Thu, 2012-04-12 04:22 |
1 |
3,255 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
1,877 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
1,768 |
by nawsad Wed, 2014-06-25 13:26 |
|
|
How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
1 |
1,878 |
by rmoretti Wed, 2015-09-02 12:48 |
|
|
HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,432 |
by smlewis Wed, 2016-08-24 07:23 |
|
|
What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
1,038 |
by matteoferla Wed, 2020-01-01 04:30 |
|
|
Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
1 |
792 |
by rmoretti Tue, 2021-02-09 10:29 |
|
|
about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
1 |
2,976 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
1 |
2,145 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,584 |
by rmoretti Tue, 2016-07-12 08:40 |
|
|
SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,308 |
by jeliazkov Tue, 2017-07-18 09:51 |
|
|
Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
1 |
1,756 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
1,371 |
by pedro.guillem Wed, 2020-06-24 04:49 |
|
|
parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
1 |
714 |
by nannemdp Sun, 2021-06-06 09:26 |
|
|
could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
1 |
2,345 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
1 |
2,813 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,179 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
1 |
1,714 |
by rmoretti Tue, 2016-09-13 07:41 |
|
|
how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
1 |
2,268 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
why not scoring function in loop model? by albumns » Thu, 2011-01-06 00:13 |
1 |
2,009 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
1 |
2,821 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
1 |
15,216 |
by rmoretti Sat, 2015-09-05 12:10 |
|
|
Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
1 |
1,559 |
by smlewis Tue, 2018-06-19 10:31 |
|
|
How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
1 |
2,837 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,487 |
by rmoretti Thu, 2016-04-28 15:57 |
|
|
Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
1,466 |
by rmoretti Wed, 2019-04-03 09:31 |
|
|
prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,298 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
1 |
1,656 |
by rmoretti Wed, 2017-03-29 12:37 |
|
|
Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
1,156 |
by jeliazkov Fri, 2019-05-03 07:00 |
|
|
Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
1 |
4,574 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
1,703 |
by rmoretti Mon, 2016-11-14 14:26 |
|
|
RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
1 |
599 |
by sia Tue, 2022-07-05 05:47 |
|
|
error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
1 |
2,406 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
1 |
1,905 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
1 |
668 |
by gezmi Sat, 2021-11-06 15:26 |
|
|
How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
1 |
1,965 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
1 |
1,775 |
by rmoretti Fri, 2015-07-03 13:14 |
|
|
Entropy calculation by abdullah_ahmed » Wed, 2010-12-01 07:52 |
1 |
2,101 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
1 |
1,871 |
by sid Mon, 2014-04-21 06:47 |
|
|
File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,101 |
by smlewis Wed, 2019-05-29 13:21 |
|
|
Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
1 |
367 |
by rmoretti Mon, 2022-09-12 07:01 |
|
|
abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
1 |
2,350 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
1 |
1,907 |
by yuvals Mon, 2014-10-06 15:02 |
|
|
Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
1 |
1,314 |
by rmoretti Wed, 2018-11-21 14:01 |
|
|
mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
1 |
356 |
by matteoferla Thu, 2022-06-09 14:41 |
|
|
total score by score » Mon, 2010-05-03 02:03 |
1 |
2,047 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
1 |
2,103 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
1 |
1,351 |
by rmoretti Wed, 2018-08-01 16:04 |
|
|
error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
1 |
1,083 |
by rmoretti Tue, 2021-02-09 12:19 |
|
|
Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
1 |
194 |
by rmoretti Mon, 2023-02-06 14:42 |
|
|
header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,071 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
1 |
1,732 |
by nawsad Fri, 2014-06-20 03:00 |
|
|
loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
1 |
1,668 |
by rmoretti Thu, 2015-08-06 09:28 |
|
|
"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
1 |
1,792 |
by smlewis Thu, 2016-08-11 13:16 |
|
|
Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
1 |
1,693 |
by jadolfbr Wed, 2017-11-01 10:11 |
|
|
I_sc by Soler » Sat, 2022-02-12 00:16 |
1 |
639 |
by rmoretti Fri, 2022-02-18 11:14 |
|
|
Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
1 |
1,924 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
1,704 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
1 |
1,752 |
by rmoretti Thu, 2018-06-28 14:28 |
|
|
Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,314 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
1 |
2,132 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
2,761 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
1 |
915 |
by rmoretti Tue, 2021-04-13 06:42 |
|
|
Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
1 |
348 |
by rmoretti Tue, 2022-06-28 11:06 |
|
|
CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
1 |
2,430 |
by AndrewBworth Mon, 2014-04-21 06:47 |
|
|
Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
1 |
1,895 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
1 |
1,795 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
1 |
3,043 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
1 |
1,830 |
by rmoretti Tue, 2014-11-04 10:35 |
|
|
RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
1 |
1,667 |
by rmoretti Sat, 2015-09-19 13:20 |
|
|
About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
1 |
1,810 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
1 |
2,106 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Helix at loop site by berk » Fri, 2013-05-31 07:04 |
1 |
1,948 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
1 |
1,743 |
by rmoretti Tue, 2016-07-12 08:36 |
|
|
Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
1 |
1,463 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
|
|
Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
3,171 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
1 |
1,581 |
by vmulligan Tue, 2019-03-26 11:30 |
|
|
Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
1 |
1,673 |
by smlewis Sun, 2016-03-13 15:25 |
|
|
Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,382 |
by rmoretti Tue, 2017-03-28 09:02 |
|
|
Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
1 |
722 |
by taylorjones Wed, 2021-06-09 16:30 |
|
|
Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,026 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
1 |
1,712 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
1 |
3,057 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
1 |
1,788 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,619 |
by rmoretti Fri, 2014-05-23 08:09 |
|
|
How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
1 |
2,350 |
by rmoretti Fri, 2015-07-03 12:58 |
|
|
Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
1 |
2,080 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
1 |
1,889 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
1 |
2,193 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
1 |
4,311 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
local refinement by mahajanr » Mon, 2010-07-19 15:04 |
1 |
1,871 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
1 |
1,907 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
1 |
2,915 |
by rmoretti Thu, 2015-12-03 15:14 |
|
|
Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
1 |
1,316 |
by jadolfbr Fri, 2018-11-09 09:17 |
|
|
Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
1 |
1,106 |
by rmoretti Wed, 2020-04-01 10:10 |
Log in to post new content in the forum.
