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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
788 by zivben
Sat, 2021-07-31 08:16
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,141 by achambe
Wed, 2016-01-13 10:46
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,961 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,350 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
2,012 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,255 by rmoretti
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,877 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,768 by nawsad
Wed, 2014-06-25 13:26
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,878 by rmoretti
Wed, 2015-09-02 12:48
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,432 by smlewis
Wed, 2016-08-24 07:23
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,038 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
792 by rmoretti
Tue, 2021-02-09 10:29
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,976 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
2,145 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,584 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,308 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,756 by smlewis
Mon, 2014-04-21 06:47
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,371 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
714 by nannemdp
Sun, 2021-06-06 09:26
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,179 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,714 by rmoretti
Tue, 2016-09-13 07:41
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
2,009 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,821 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,216 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,559 by smlewis
Tue, 2018-06-19 10:31
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
2,837 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,487 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,466 by rmoretti
Wed, 2019-04-03 09:31
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,298 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,656 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
1,156 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,574 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,703 by rmoretti
Mon, 2016-11-14 14:26
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
599 by sia
Tue, 2022-07-05 05:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,406 by jtmacd
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,905 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
668 by gezmi
Sat, 2021-11-06 15:26
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,965 by rmoretti
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,775 by rmoretti
Fri, 2015-07-03 13:14
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
2,101 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,871 by sid
Mon, 2014-04-21 06:47
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
1,101 by smlewis
Wed, 2019-05-29 13:21
Normal topic Residue outside res_map range
by to-qinbin@163.com » Sat, 2022-09-10 01:56
1
367 by rmoretti
Mon, 2022-09-12 07:01
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,907 by yuvals
Mon, 2014-10-06 15:02
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
1,314 by rmoretti
Wed, 2018-11-21 14:01
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
356 by matteoferla
Thu, 2022-06-09 14:41
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
2,047 by smlewis
Mon, 2014-04-21 06:47
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
2,103 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,351 by rmoretti
Wed, 2018-08-01 16:04
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
1,083 by rmoretti
Tue, 2021-02-09 12:19
Normal topic Calculating shape complementarity of ligand and protein
by varunmc99 » Tue, 2023-01-17 11:29
1
194 by rmoretti
Mon, 2023-02-06 14:42
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
2,071 by smlewis
Mon, 2014-04-21 06:47
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,732 by nawsad
Fri, 2014-06-20 03:00
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,668 by rmoretti
Thu, 2015-08-06 09:28
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
1,792 by smlewis
Thu, 2016-08-11 13:16
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
1,693 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic I_sc
by Soler » Sat, 2022-02-12 00:16
1
639 by rmoretti
Fri, 2022-02-18 11:14
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,924 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,704 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
1,752 by rmoretti
Thu, 2018-06-28 14:28
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,314 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
2,132 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,761 by rmoretti
Mon, 2014-04-21 06:48
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
915 by rmoretti
Tue, 2021-04-13 06:42
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
348 by rmoretti
Tue, 2022-06-28 11:06
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,430 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,895 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
1,795 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
3,043 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,830 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,667 by rmoretti
Sat, 2015-09-19 13:20
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,810 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
2,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,948 by smlewis
Mon, 2014-04-21 06:48
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,743 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
1,463 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
3,171 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,581 by vmulligan
Tue, 2019-03-26 11:30
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,673 by smlewis
Sun, 2016-03-13 15:25
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,382 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
722 by taylorjones
Wed, 2021-06-09 16:30
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,026 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,712 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
3,057 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,788 by smlewis
Mon, 2014-04-21 06:47
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,619 by rmoretti
Fri, 2014-05-23 08:09
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,350 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
2,080 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,311 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,915 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
1,316 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
1,106 by rmoretti
Wed, 2020-04-01 10:10
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