You are here

Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,046 by yuvals
Sat, 2014-06-21 02:17
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
841 by rmoretti
Tue, 2021-02-09 11:30
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,541 by smlewis
Mon, 2014-04-21 06:47
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
1,623 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,104 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,748 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,384 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,963 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,569 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,872 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,161 by rmoretti
Mon, 2018-02-12 09:39
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,109 by smlewis
Mon, 2014-04-21 06:47
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
895 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,597 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,358 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,415 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
864 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,050 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,423 by kaue
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,332 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,332 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
525 by cryosky
Fri, 2021-09-17 22:04
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,533 by reddybg
Mon, 2014-04-21 06:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,085 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,681 by rmoretti
Sat, 2018-03-17 10:43
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,261 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,147 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,150 by rmoretti
Mon, 2018-03-19 09:08
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,055 by vmulligan
Mon, 2019-04-08 14:49
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,689 by Lati
Fri, 2015-11-20 03:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
190 by rmoretti
Thu, 2022-04-07 07:51
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,723 by sid
Mon, 2014-04-21 06:47
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,845 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,783 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,700 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,167 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,067 by smlewis
Thu, 2018-06-28 13:34
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,786 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
1,903 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,035 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,047 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
1,628 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
947 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
1,621 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,621 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
2,863 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,634 by rmoretti
Mon, 2016-11-14 15:12
Normal topic use_truncated_termini not working in combination with params files
by georg » Thu, 2020-03-26 13:14
1
879 by matteoferla
Tue, 2020-04-14 03:36
Normal topic AbinitioRelax of RCSB PDB structures
by ac.research » Tue, 2019-09-03 02:35
1
1,042 by danpf
Tue, 2019-09-03 10:39
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
393 by ajasja
Thu, 2021-11-18 00:33
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,137 by rmoretti
Mon, 2014-06-16 08:23
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,135 by rmoretti
Fri, 2020-11-13 12:58
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,395 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
617 by rmoretti
Wed, 2021-07-14 07:07
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,554 by smlewis
Tue, 2015-12-22 08:31
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,772 by rmoretti
Wed, 2018-01-31 14:57
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,224 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,761 by nawsad
Fri, 2014-06-20 02:48
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,380 by smlewis
Mon, 2016-08-22 10:39
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
1,627 by denatured
Fri, 2019-12-13 11:19
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
701 by rmoretti
Wed, 2021-01-20 07:39
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
309 by vmulligan
Thu, 2022-03-03 18:48
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,751 by smlewis
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,799 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,903 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,598 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,809 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,085 by rmoretti
Thu, 2018-06-28 14:22
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
1,873 by smlewis
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,037 by rmoretti
Mon, 2019-08-26 15:00
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,003 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
648 by matteoferla
Thu, 2021-09-02 03:50
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,590 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
1,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,693 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,924 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,372 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
764 by vmulligan
Wed, 2021-04-28 14:20
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,820 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,839 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,337 by rmoretti
Mon, 2017-03-06 08:37
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,237 by smlewis
Mon, 2014-04-21 06:47
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
688 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,046 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,550 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,086 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,260 by matteoferla
Thu, 2018-09-13 06:21
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,972 by smlewis
Mon, 2014-04-21 06:47
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,587 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,600 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,400 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,985 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,574 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,803 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,988 by smlewis
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General