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Rosetta 3 - General
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
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1,878 |
by rmoretti Tue, 2021-02-09 09:22 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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3,990 |
by jadolfbr Mon, 2014-04-21 21:05 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
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2,699 |
by smlewis Thu, 2016-06-30 08:44 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
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3,874 |
by rmoretti Mon, 2014-04-21 06:48 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
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3,637 |
by matteoferla Sat, 2017-08-05 07:18 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
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2,946 |
by smlewis Mon, 2014-04-21 06:47 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
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14,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
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4,606 |
by Sandy Fri, 2015-08-07 15:49 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
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2,951 |
by ac.research Sun, 2017-09-24 11:25 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
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1,203 |
by matteoferla Mon, 2022-01-10 06:44 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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5,359 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
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3,750 |
by smlewis Thu, 2016-04-21 16:00 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
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5,701 |
by rosend Fri, 2015-12-18 19:39 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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2,767 |
by smlewis Tue, 2016-12-20 10:40 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
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3,010 |
by smlewis Mon, 2014-04-21 06:47 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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3,707 |
by rmoretti Wed, 2014-10-29 14:30 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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2,050 |
by rmoretti Tue, 2019-10-22 07:05 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
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217 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
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relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
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2,952 |
by smlewis Mon, 2014-04-21 06:47 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
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3,553 |
by franfdez Mon, 2014-04-21 06:47 |
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how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
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3,829 |
by rmoretti Tue, 2014-04-01 08:12 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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3,755 |
by rmoretti Mon, 2015-03-30 16:58 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
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2,650 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
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3,648 |
by rmoretti Mon, 2018-03-19 12:35 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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631 |
by rmoretti Mon, 2022-07-18 11:56 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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3,716 |
by MRH Mon, 2014-04-21 06:48 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
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15,783 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,394 |
by rmoretti Thu, 2015-04-30 16:09 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
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2,290 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
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4,158 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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5,011 |
by rmoretti Mon, 2014-04-21 06:48 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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3,103 |
by jklett Mon, 2014-04-21 06:47 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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3,381 |
by frits Mon, 2014-04-21 06:48 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
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2,621 |
by rmoretti Tue, 2017-04-18 13:49 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
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3,658 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
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3,395 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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3,022 |
by ctaylor Mon, 2014-04-21 06:47 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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2,949 |
by ela Thu, 2018-08-09 08:04 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
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3,289 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta dock parallel by mahajanr » Tue, 2010-06-01 16:04 |
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3,846 |
by smlewis Mon, 2014-04-21 06:47 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
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4,257 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
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4,752 |
by pholland Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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3,415 |
by eunwook Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
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3,811 |
by cneale Fri, 2014-03-21 18:13 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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1,934 |
by matteoferla Thu, 2020-05-14 07:01 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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2,986 |
by smlewis Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
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4,338 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
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2,940 |
by ssrb Tue, 2018-03-06 14:15 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,210 |
by smlewis Mon, 2016-08-22 10:28 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
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2,424 |
by renedominik Mon, 2018-06-04 00:04 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
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3,191 |
by smlewis Mon, 2014-04-21 06:47 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
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3,292 |
by alejandro Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
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3,567 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
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4,086 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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3,031 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
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3,738 |
by monica0569 Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
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2,852 |
by smlewis Mon, 2014-04-21 06:47 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
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2,939 |
by jadolfbr Mon, 2014-04-21 06:48 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
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2,995 |
by rmoretti Mon, 2015-05-25 11:00 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
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3,170 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
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3,584 |
by smlewis Mon, 2014-04-21 06:47 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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1,533 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
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3,563 |
by rmoretti Mon, 2018-01-15 15:34 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
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4,776 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
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3,835 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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3,857 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta lack of necessary application by ylwang » Wed, 2018-11-07 01:13 |
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2,329 |
by rmoretti Wed, 2018-11-21 13:50 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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3,048 |
by scombs Mon, 2014-04-21 06:47 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
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3,152 |
by smlewis Mon, 2014-04-21 06:47 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
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2,329 |
by rmoretti Mon, 2017-10-30 12:02 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
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1,874 |
by ylwang Sat, 2019-11-23 06:26 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
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3,551 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
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3,090 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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2,878 |
by msun Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
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5,991 |
by rmoretti Mon, 2014-11-03 16:39 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,250 |
by smlewis Mon, 2014-04-21 06:47 |
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what option should I use if I want to use the dfire in 3.4 by Lindsay » Thu, 2012-04-12 05:19 |
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3,321 |
by smlewis Mon, 2014-04-21 06:47 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
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3,142 |
by rmoretti Thu, 2015-09-17 12:42 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,299 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
3 |
3,884 |
by smlewis Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
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8,303 |
by rmoretti Mon, 2014-04-21 06:48 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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3,089 |
by rmoretti Mon, 2014-04-21 06:48 |
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Simple FoldTree Question by gipsonb » Wed, 2012-04-25 18:19 |
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3,387 |
by gipsonb Mon, 2014-04-21 06:47 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
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3,319 |
by rmoretti Mon, 2014-04-21 06:48 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
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3,324 |
by rmoretti Mon, 2016-11-14 14:21 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
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2,424 |
by matteoferla Thu, 2018-10-04 01:30 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
3 |
5,936 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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3,114 |
by rmoretti Sun, 2015-07-05 14:28 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
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3,922 |
by rmoretti Mon, 2015-02-09 11:21 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
3 |
3,060 |
by rmoretti Mon, 2014-09-29 13:45 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
3 |
2,927 |
by aaxx Wed, 2019-11-06 01:44 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
2,673 |
by SergeyP Mon, 2018-11-12 09:19 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
2,956 |
by smlewis Fri, 2016-07-29 07:43 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
2,758 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
3 |
5,225 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
3,395 |
by rmoretti Wed, 2017-06-28 01:33 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
1,990 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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2,086 |
by smlewis Mon, 2018-11-19 13:20 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
3,678 |
by rmoretti Mon, 2014-04-21 06:48 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
2,853 |
by matteoferla Mon, 2018-02-26 02:05 |
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