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Rosetta 3 - General
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
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2,690 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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1,997 |
by Martin Floor Tue, 2018-08-28 13:21 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
6 |
4,240 |
by rmoretti Fri, 2018-08-24 11:59 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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1,840 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
1,645 |
by rmoretti Mon, 2018-08-20 11:51 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
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3,951 |
by rmoretti Mon, 2018-08-20 11:45 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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2,940 |
by ela Thu, 2018-08-09 08:04 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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1,362 |
by smlewis Tue, 2018-08-07 16:59 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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1,678 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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2,901 |
by rmoretti Fri, 2018-08-03 11:39 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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1,576 |
by rmoretti Fri, 2018-08-03 08:59 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
3 |
2,194 |
by rmoretti Fri, 2018-08-03 08:42 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
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1,404 |
by rmoretti Wed, 2018-08-01 16:04 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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1,851 |
by jkleman Tue, 2018-07-31 13:19 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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2,038 |
by eminegenetics Wed, 2018-07-18 13:48 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
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2,679 |
by renedominik Sat, 2018-07-07 03:03 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
5 |
3,705 |
by smlewis Tue, 2018-07-03 11:22 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
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2,012 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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1,804 |
by rmoretti Thu, 2018-06-28 14:28 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,283 |
by rmoretti Thu, 2018-06-28 14:22 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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2,855 |
by rmoretti Thu, 2018-06-28 14:09 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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1,274 |
by smlewis Thu, 2018-06-28 13:34 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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1,632 |
by smlewis Tue, 2018-06-19 10:31 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
6,715 |
by smlewis Tue, 2018-06-19 09:28 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
5 |
3,243 |
by smlewis Tue, 2018-06-12 10:54 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,416 |
by renedominik Mon, 2018-06-04 00:04 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,050 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
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7,397 |
by ac.research Mon, 2018-05-14 10:20 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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926 |
by ac.research Mon, 2018-05-14 08:27 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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913 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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854 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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848 |
by pmit Thu, 2018-05-03 01:48 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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1,719 |
by orionshih Tue, 2018-05-01 21:16 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
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5,748 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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1,683 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
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3,016 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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2,535 |
by asbelx Thu, 2018-04-26 00:23 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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4,827 |
by linucks Wed, 2018-04-25 08:50 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,188 |
by jferrie Mon, 2018-04-23 15:25 |
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Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
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1,914 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
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2,286 |
by smlewis Wed, 2018-04-18 19:03 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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913 |
by obdulia Wed, 2018-04-18 00:45 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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1,745 |
by smlewis Mon, 2018-04-16 16:32 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
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1,408 |
by jkleman Sat, 2018-04-14 10:55 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,222 |
by smlewis Wed, 2018-04-11 11:45 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
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3,745 |
by rmoretti Tue, 2018-04-10 16:00 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
3 |
2,155 |
by smlewis Wed, 2018-04-04 10:42 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
3 |
2,281 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
5 |
3,827 |
by smlewis Wed, 2018-03-21 08:42 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
9 |
5,071 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
3 |
3,639 |
by rmoretti Mon, 2018-03-19 12:35 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,350 |
by rmoretti Mon, 2018-03-19 09:08 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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1,936 |
by rmoretti Sat, 2018-03-17 10:43 |
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Rosetta matching error by purvi24 » Mon, 2018-03-12 02:38 |
1 |
1,829 |
by smlewis Mon, 2018-03-12 09:57 |
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ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
13 |
7,364 |
by brandon.frenz Thu, 2018-03-08 09:28 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
5 |
3,360 |
by rmoretti Thu, 2018-03-08 07:46 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
3 |
2,931 |
by ssrb Tue, 2018-03-06 14:15 |
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RestrictToRepackingRLT and PreventRepackingRLT by coomteng@gmail.com » Mon, 2018-03-05 11:19 |
2 |
2,077 |
by coomteng@gmail.com Tue, 2018-03-06 02:31 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
2,837 |
by matteoferla Mon, 2018-02-26 02:05 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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3,515 |
by linucks Fri, 2018-02-23 08:08 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,264 |
by rmoretti Thu, 2018-02-22 09:29 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
7 |
5,829 |
by shadrinams Mon, 2018-02-12 11:47 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,388 |
by rmoretti Mon, 2018-02-12 09:39 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
2 |
1,772 |
by sheehajh Thu, 2018-02-08 21:18 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
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1,476 |
by rmoretti Mon, 2018-02-05 15:44 |
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Using NCAAs in protocols with native heme proteins by htorres » Wed, 2018-01-24 08:32 |
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2,232 |
by htorres Mon, 2018-02-05 06:53 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
1 |
1,995 |
by rmoretti Wed, 2018-01-31 14:57 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
1 |
1,937 |
by rmoretti Tue, 2018-01-30 09:08 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
1 |
1,419 |
by rmoretti Tue, 2018-01-30 08:29 |
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changing the chain id by aneamtu » Tue, 2018-01-09 00:08 |
2 |
4,046 |
by aneamtu Thu, 2018-01-18 00:56 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
11 |
15,842 |
by rmoretti Mon, 2018-01-15 15:37 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
3,548 |
by rmoretti Mon, 2018-01-15 15:34 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,148 |
by rmoretti Mon, 2018-01-15 15:24 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
1,703 |
by rmoretti Mon, 2018-01-15 14:35 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
2 |
1,915 |
by aneamtu Mon, 2018-01-08 23:49 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
3 |
3,651 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,101 |
by rmoretti Sat, 2017-12-16 12:19 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
5 |
3,658 |
by Loki01 Thu, 2017-12-14 06:20 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
0 |
943 |
by bio_james Wed, 2017-12-13 09:13 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
1 |
1,337 |
by Loki01 Wed, 2017-12-13 05:27 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
1,094 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
1,892 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,576 |
by rmoretti Sat, 2017-12-02 10:22 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
3 |
3,221 |
by everyday847 Tue, 2017-11-28 13:07 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
0 |
966 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
1 |
1,377 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
1 |
2,903 |
by smlewis Sun, 2017-11-19 20:08 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
1 |
1,312 |
by ac.research Sat, 2017-11-18 06:54 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
2,746 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
0 |
940 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
3 |
3,747 |
by smlewis Wed, 2017-11-08 12:08 |
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Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
1 |
4,048 |
by rmoretti Mon, 2017-11-06 07:36 |
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Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
1 |
1,745 |
by jadolfbr Wed, 2017-11-01 10:11 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
926 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
3 |
2,320 |
by rmoretti Mon, 2017-10-30 12:02 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
2,847 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
0 |
1,218 |
by fmerino Mon, 2017-10-16 04:02 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
2,942 |
by ac.research Sun, 2017-09-24 11:25 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
4,525 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,515 |
by rmoretti Fri, 2017-09-08 15:15 |
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