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Rosetta 3 - General

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Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
6,410 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
5,407 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
611 by nferruz
Fri, 2020-08-28 06:05
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
2,575 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
2,952 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,027 by jhbrown
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,772 by rmoretti
Wed, 2018-01-31 14:57
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,785 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
984 by szcshr123
Fri, 2021-02-26 14:41
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38
15
16,722 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
2,878 by phanvy
Mon, 2014-04-21 03:58
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,358 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
190 by rmoretti
Thu, 2022-04-07 07:51
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,569 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
6,311 by rmoretti
Tue, 2019-07-09 10:29
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
2
23 by almeida85
Thu, 2022-08-11 00:32
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,114 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
5,735 by smlewis
Tue, 2018-06-19 09:28
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
18 by rmoretti
Tue, 2022-08-09 06:52
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,054 by Kazu
Mon, 2020-05-18 10:52
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
784 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
3,060 by smlewis
Wed, 2016-03-30 09:52
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,553 by rmoretti
Mon, 2016-11-14 14:26
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
7
6,615 by jurkm
Mon, 2014-04-21 06:47
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
6
5,166 by G Mustafa
Fri, 2021-09-10 01:16
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
4,794 by smlewis
Sun, 2017-01-15 18:14
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,086 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
3,961 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
6,227 by jrcf
Wed, 2016-03-23 12:16
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
1,452 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,911 by aloshbau
Mon, 2015-12-14 23:30
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
2,642 by justin
Mon, 2014-04-21 06:47
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
648 by matteoferla
Thu, 2021-09-02 03:50
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,541 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,321 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
618 by zivben
Sat, 2021-07-31 08:16
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
1,050 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
6,157 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,491 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
4,428 by smlewis
Mon, 2014-04-21 06:47
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
786 by obdulia
Wed, 2018-04-18 00:45
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,369 by rmoretti
Sat, 2017-12-02 10:22
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
4,111 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
761 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Fe3p Heme Iron Unrecognized Despite Loading Hem Params
by vsjasion » Fri, 2011-09-02 10:37
6
6,496 by tigerous
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,564 by rmoretti
Mon, 2014-04-21 06:47
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
946 by smlewis
Wed, 2019-05-29 13:21
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,287 by aaj
Mon, 2016-02-22 07:43
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
553 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
2,980 by smlewis
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
5,669 by einew
Mon, 2014-04-21 06:47
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
1,626 by ahmadkhalifa
Wed, 2017-12-06 12:30
Hot topic Fix back bone design fixbb
by Lindsay » Tue, 2012-03-06 12:30
26
18,599 by Anonymous
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
3,663 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
3,040 by Matthys
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,901 by doranhen
Mon, 2014-04-21 06:47
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
2,315 by swoody
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,324 by Lindsay
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
8,975 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
2,841 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
4,929 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,094 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,282 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
393 by ate
Wed, 2021-06-16 19:19
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
9,663 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
4,089 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,986 by knutjbj
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
2,303 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
3,266 by mansi
Mon, 2014-04-21 06:47
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
4,788 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,392 by jtmacd
Mon, 2014-04-21 06:48
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
3,275 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
3,778 by rmoretti
Tue, 2015-01-06 09:58
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,524 by phanvy
Wed, 2014-12-10 00:17
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
829 by dgront
Thu, 2021-02-11 08:30
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,622 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
8,172 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
2,102 by renedominik
Mon, 2018-06-04 00:04
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
10,389 by sabine
Mon, 2014-04-21 06:47
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
1,722 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,988 by achambe
Wed, 2016-01-13 10:46
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
881 by matteoferla
Fri, 2020-07-24 03:06
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,460 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic General Protein Folding Question
by twopint23oz » Sun, 2012-04-01 22:57
7
5,325 by smlewis
Mon, 2014-04-21 06:47
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
2,429 by smlewis
Tue, 2016-12-20 10:40
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,077 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
2,616 by Trentage
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,005 by IAndre
Mon, 2014-04-21 06:47
Normal topic Generate structural fragments
by kingljy » Tue, 2011-05-10 20:18
2
4,570 by pepfolder
Mon, 2014-04-21 06:47
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
139 by matteoferla
Fri, 2022-06-17 10:38
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
2,087 by ndousis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,423 by kaue
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,872 by rmoretti
Thu, 2016-04-28 16:25
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
2
132 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,693 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
5,209 by rosend
Fri, 2015-12-18 19:39
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,134 by smlewis
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
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