You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
3,209 |
by szypanther Mon, 2014-05-26 22:03 |
|
|
Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
3,633 |
by smlewis Wed, 2017-08-16 08:30 |
|
|
Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,214 |
by linucks Mon, 2017-07-03 09:50 |
|
|
Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
12 |
12,100 |
by rmoretti Mon, 2014-10-06 16:50 |
|
|
Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
11 |
10,156 |
by G Mustafa Fri, 2021-09-10 08:20 |
|
|
Error when trying to use xml script to design PDB by Wexter300 » Fri, 2023-02-24 13:29 |
1 |
193 |
by rmoretti Fri, 2023-02-24 13:58 |
|
|
Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
5 |
3,345 |
by jadolfbr Mon, 2019-01-28 08:46 |
|
|
Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
1 |
2,617 |
by amelie Tue, 2014-09-30 14:29 |
|
|
Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
0 |
480 |
by lsong2 Thu, 2021-11-18 10:31 |
|
|
error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
981 |
by windmill Thu, 2020-06-18 21:32 |
|
|
Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,038 |
by saxen Mon, 2016-04-25 10:38 |
|
|
Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,422 |
by rmoretti Tue, 2017-03-28 09:02 |
|
|
Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
728 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
|
|
Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
6,331 |
by sk0319 Wed, 2017-01-11 10:52 |
|
|
Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
3 |
248 |
by rmoretti Mon, 2023-01-30 08:04 |
|
|
Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
1 |
100 |
by ajasja Wed, 2023-04-05 00:20 |
|
|
Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
0 |
233 |
by He Xiao Mon, 2022-11-07 04:10 |
|
|
Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
2,014 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
|
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
3,587 |
by rmoretti Tue, 2016-07-12 08:18 |
|
|
ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
13 |
7,366 |
by brandon.frenz Thu, 2018-03-08 09:28 |
|
|
ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
6 |
126 |
by rmoretti Tue, 2023-05-16 07:10 |
|
|
ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
5,853 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
0 |
749 |
by nferruz Fri, 2020-08-28 06:05 |
|
|
ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
2,791 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
3 |
3,241 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,228 |
by jhbrown Mon, 2014-04-21 06:47 |
|
|
ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
1 |
1,995 |
by rmoretti Wed, 2018-01-31 14:57 |
|
|
ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
1 |
1,951 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
2 |
1,342 |
by szcshr123 Fri, 2021-02-26 14:41 |
|
|
ERROR: Option matching -s not found in command line top-level context by xxx » Wed, 2011-04-20 05:38 |
15 |
17,847 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
2 |
3,233 |
by phanvy Mon, 2014-04-21 03:58 |
|
|
Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,532 |
by rmoretti Thu, 2016-04-28 15:57 |
|
|
Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
1 |
926 |
by rmoretti Thu, 2022-04-07 07:51 |
|
|
ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
1 |
2,885 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
1,936 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
6,939 |
by rmoretti Tue, 2019-07-09 10:29 |
|
|
ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
2 |
431 |
by almeida85 Thu, 2022-08-11 00:32 |
|
|
ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,407 |
by harshkhare Mon, 2014-04-21 06:47 |
|
|
ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
6,716 |
by smlewis Tue, 2018-06-19 09:28 |
|
|
ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
1 |
450 |
by rmoretti Tue, 2022-08-09 06:52 |
|
|
Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
2,429 |
by Kazu Mon, 2020-05-18 10:52 |
|
|
Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
971 |
by zhoubin Fri, 2019-01-04 13:14 |
|
|
Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
3,398 |
by smlewis Wed, 2016-03-30 09:52 |
|
|
Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
1,757 |
by rmoretti Mon, 2016-11-14 14:26 |
|
|
errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
7 |
7,090 |
by jurkm Mon, 2014-04-21 06:47 |
|
|
Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
5,875 |
by G Mustafa Fri, 2021-09-10 01:16 |
|
|
ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
5,444 |
by smlewis Sun, 2017-01-15 18:14 |
|
|
Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
1 |
2,305 |
by rmoretti Wed, 2014-07-16 08:07 |
|
|
Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
5 |
4,371 |
by pachecoj Sat, 2014-08-09 06:33 |
|
|
Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
6,895 |
by jrcf Wed, 2016-03-23 12:16 |
|
|
Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
1,703 |
by rmoretti Mon, 2018-01-15 14:35 |
|
|
Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,146 |
by aloshbau Mon, 2015-12-14 23:30 |
|
|
Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
3 |
2,901 |
by justin Mon, 2014-04-21 06:47 |
|
|
Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
929 |
by matteoferla Thu, 2021-09-02 03:50 |
|
|
extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
1 |
1,709 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,515 |
by rmoretti Fri, 2017-09-08 15:15 |
|
|
Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
1 |
842 |
by zivben Sat, 2021-07-31 08:16 |
|
|
Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
2 |
1,354 |
by avsrivatsa Mon, 2020-10-19 18:16 |
|
|
extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
6,653 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
1 |
1,730 |
by rmoretti Wed, 2017-03-29 12:37 |
|
|
Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
4,735 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
0 |
218 |
by biotech Wed, 2022-10-26 11:17 |
|
|
FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
913 |
by obdulia Wed, 2018-04-18 00:45 |
|
|
fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,576 |
by rmoretti Sat, 2017-12-02 10:22 |
|
|
Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
4,504 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,073 |
by matteoferla Thu, 2021-06-03 08:24 |
|
|
Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
6 |
6,937 |
by tigerous Mon, 2014-04-21 06:47 |
|
|
Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
1,754 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
3 |
197 |
by rmoretti Mon, 2023-05-15 15:23 |
|
|
File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,153 |
by smlewis Wed, 2019-05-29 13:21 |
|
|
filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,550 |
by aaj Mon, 2016-02-22 07:43 |
|
|
Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
0 |
688 |
by adityapadhi Wed, 2020-06-24 01:29 |
|
|
first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
3 |
3,241 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,077 |
by einew Mon, 2014-04-21 06:47 |
|
|
Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
1,892 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
|
|
Fix back bone design fixbb by Lindsay » Tue, 2012-03-06 12:30 |
26 |
20,374 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
3,983 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,309 |
by Matthys Mon, 2014-04-21 06:47 |
|
|
fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,225 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,566 |
by swoody Mon, 2014-04-21 06:47 |
|
|
fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,546 |
by Lindsay Mon, 2014-04-21 06:47 |
|
|
fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
9,830 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
3,088 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
|
|
Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
5,390 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
1 |
1,376 |
by jadolfbr Thu, 2019-08-29 14:29 |
|
|
Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
2 |
1,565 |
by matteoferla Wed, 2019-08-21 11:58 |
|
|
Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
0 |
550 |
by ate Wed, 2021-06-16 19:19 |
|
|
flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
10,524 |
by gsmurphy Mon, 2014-04-21 06:47 |
|
|
Flexible backbone design using PSSM by kalicuta » Thu, 2012-07-26 13:38 |
4 |
4,462 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
2 |
4,195 |
by knutjbj Mon, 2014-04-21 06:47 |
|
|
Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
4 |
2,684 |
by eminegenetics Fri, 2018-09-21 07:42 |
|
|
Fold tree error by mansi » Tue, 2010-05-18 07:43 |
2 |
3,526 |
by mansi Mon, 2014-04-21 06:47 |
|
|
force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
5,353 |
by masterofpuppets Tue, 2015-01-27 07:07 |
|
|
force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
2,632 |
by jtmacd Mon, 2014-04-21 06:48 |
|
|
force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,561 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,456 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
4 |
4,164 |
by rmoretti Tue, 2015-01-06 09:58 |
|
|
Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
2,807 |
by phanvy Wed, 2014-12-10 00:17 |
|
|
Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
1 |
1,072 |
by dgront Thu, 2021-02-11 08:30 |
|
|
fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
2,805 |
by rmoretti Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.
