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Rosetta 3 - General

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Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,632 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
1,051 by Wexter300
Wed, 2023-01-25 12:34
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
3,421 by jos
Mon, 2014-04-21 06:47
Normal topic Error when renumbering PDB
by dzhao » Wed, 2012-07-18 01:03
7
9,367 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
14,809 by phanvy
Wed, 2014-06-18 07:50
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
3,608 by szypanther
Mon, 2014-05-26 22:03
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
4,352 by smlewis
Wed, 2017-08-16 08:30
Normal topic Error when running AqueousPoreFinder protocol
by mluengo » Mon, 2023-12-11 02:55
0
254 by mluengo
Mon, 2023-12-11 03:13
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,797 by linucks
Mon, 2017-07-03 09:50
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
13,618 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
11,549 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
630 by rmoretti
Fri, 2023-02-24 13:58
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
4,114 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,902 by amelie
Tue, 2014-09-30 14:29
Normal topic Error when using published constraints file
by Delfosse57 » Thu, 2023-08-17 11:22
2
516 by ikalvet
Mon, 2023-08-21 05:52
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
671 by lsong2
Thu, 2021-11-18 10:31
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
1,261 by windmill
Thu, 2020-06-18 21:32
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,661 by saxen
Mon, 2016-04-25 10:38
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,689 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
944 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
7,322 by sk0319
Wed, 2017-01-11 10:52
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
940 by rmoretti
Mon, 2023-01-30 08:04
Normal topic Error with residue selectors not counting indices correctly.
by Wexter300 » Tue, 2023-04-04 11:04
1
507 by ajasja
Wed, 2023-04-05 00:20
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
0
532 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
2,544 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
4,122 by rmoretti
Tue, 2016-07-12 08:18
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
8,974 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr
by alove1 » Sat, 2023-10-28 17:19
3
555 by alove1
Mon, 2023-10-30 13:18
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
1,400 by rmoretti
Tue, 2023-05-16 07:10
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
6,524 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
917 by nferruz
Fri, 2020-08-28 06:05
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
3,048 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
3,711 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,529 by jhbrown
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
2,332 by rmoretti
Wed, 2018-01-31 14:57
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
2,224 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,897 by szcshr123
Fri, 2021-02-26 14:41
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38
15
19,551 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
3,710 by phanvy
Mon, 2014-04-21 03:58
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,798 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,794 by rmoretti
Thu, 2022-04-07 07:51
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
3,368 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,180 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
2
1,066 by almeida85
Thu, 2022-08-11 00:32
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
7,846 by rmoretti
Tue, 2019-07-09 10:29
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,762 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
8,255 by smlewis
Tue, 2018-06-19 09:28
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
1,005 by rmoretti
Tue, 2022-08-09 06:52
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,982 by Kazu
Mon, 2020-05-18 10:52
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
0
1,174 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
3,986 by smlewis
Wed, 2016-03-30 09:52
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
2,093 by rmoretti
Mon, 2016-11-14 14:26
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
7
7,809 by jurkm
Mon, 2014-04-21 06:47
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
6
6,750 by G Mustafa
Fri, 2021-09-10 01:16
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
6,425 by smlewis
Sun, 2017-01-15 18:14
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,583 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
4,989 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
7,931 by jrcf
Wed, 2016-03-23 12:16
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
2,107 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,512 by aloshbau
Mon, 2015-12-14 23:30
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
3,310 by justin
Mon, 2014-04-21 06:47
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
1,385 by matteoferla
Thu, 2021-09-02 03:50
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,962 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,790 by rmoretti
Fri, 2017-09-08 15:15
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
1,203 by zivben
Sat, 2021-07-31 08:16
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
1,820 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
7,360 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
2,067 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
5,180 by smlewis
Mon, 2014-04-21 06:47
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
0
523 by biotech
Wed, 2022-10-26 11:17
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
1,095 by obdulia
Wed, 2018-04-18 00:45
Normal topic FARFAR2 Error With Secondary Structure File
by bdh81 » Thu, 2023-11-02 09:01
2
423 by bdh81
Sun, 2023-11-05 16:04
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
0
221 by Eden
Sat, 2023-11-18 02:39
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,881 by rmoretti
Sat, 2017-12-02 10:22
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
5,020 by rmoretti
Mon, 2014-04-21 06:48
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,574 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Fe3p Heme Iron Unrecognized Despite Loading Hem Params
by vsjasion » Fri, 2011-09-02 10:37
6
7,623 by tigerous
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
2,057 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Figuring out the input flags required for this script
by jjung380 » Wed, 2023-04-19 14:17
3
990 by rmoretti
Mon, 2023-05-15 15:23
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
1,425 by smlewis
Wed, 2019-05-29 13:21
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,903 by aaj
Mon, 2016-02-22 07:43
Normal topic Filters saying atom type does not exist on residue
by mdm95 » Mon, 2024-03-04 15:13
1
139 by mdm95
Tue, 2024-03-05 14:05
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
882 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
3,637 by smlewis
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
6,667 by einew
Mon, 2014-04-21 06:47
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
2,276 by ahmadkhalifa
Wed, 2017-12-06 12:30
Hot topic Fix back bone design fixbb
by Lindsay » Tue, 2012-03-06 12:30
26
22,732 by Anonymous
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
4,465 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
3,694 by Matthys
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
3,591 by doranhen
Mon, 2014-04-21 06:47
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
2,922 by swoody
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,881 by Lindsay
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
10,944 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
3,460 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic Fixed bb design with hydrogen bond constraint
by bharat_46010 » Mon, 2012-04-30 22:56
6
5,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,785 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,931 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
743 by ate
Wed, 2021-06-16 19:19
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
11,947 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
5,013 by rmoretti
Mon, 2014-04-21 06:47
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Hot topic without new posts
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