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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,630 by ssrb
Tue, 2016-07-12 10:02
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,630 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,632 by smlewis
Tue, 2018-06-19 10:31
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
1,636 by rmoretti
Wed, 2019-04-03 09:58
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,639 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,640 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
1,641 by ylwang
Tue, 2019-10-08 18:34
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
1,641 by ylwang
Tue, 2020-03-24 19:35
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,642 by vmulligan
Tue, 2019-03-26 11:30
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
1,645 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,670 by jurkm
Mon, 2014-04-21 06:47
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
1,678 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
1,683 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
1,684 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,696 by smlewis
Mon, 2014-04-21 06:47
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,701 by smlewis
Mon, 2014-04-21 06:47
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
1,703 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
1,705 by rmoretti
Fri, 2019-03-29 14:43
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,708 by joseph
Mon, 2014-04-21 06:47
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,709 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,715 by rmoretti
Sat, 2015-09-19 13:20
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,718 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
1,719 by orionshih
Tue, 2018-05-01 21:16
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,722 by smlewis
Sun, 2016-03-13 15:25
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,723 by smlewis
Sun, 2016-01-10 10:02
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,723 by smlewis
Mon, 2014-04-21 06:48
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,725 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic AbInitioRelax.mpi Hangs - Waiting for Job Request
by nleroy » Thu, 2019-10-31 07:30
2
1,728 by nleroy
Fri, 2019-11-08 12:44
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,730 by rmoretti
Wed, 2017-03-29 12:37
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,733 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,735 by rmoretti
Fri, 2015-07-03 13:51
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,739 by smlewis
Tue, 2015-12-22 08:31
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,740 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
1,745 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,745 by smlewis
Mon, 2018-04-16 16:32
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,747 by Trentage
Mon, 2014-04-21 06:47
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
1,749 by jalan
Sun, 2020-04-12 08:01
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,751 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,754 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,755 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,757 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,761 by smlewis
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,765 by smlewis
Mon, 2014-04-21 06:47
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,768 by rmoretti
Tue, 2014-07-01 12:07
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,772 by smlewis
Mon, 2014-04-21 06:47
Normal topic Repeating sequence in Rosetta de novo protein folding
by orionshih » Wed, 2018-02-07 20:52
2
1,772 by sheehajh
Thu, 2018-02-08 21:18
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,773 by rmoretti
Mon, 2014-04-21 06:48
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,775 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,777 by nawsad
Fri, 2014-06-20 03:00
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,779 by rmoretti
Thu, 2015-04-30 07:13
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
1,784 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers?
by johnnytam100 » Wed, 2019-05-08 02:30
2
1,784 by johnnytam100
Wed, 2019-05-15 18:45
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,794 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,795 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
1,802 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
1,803 by smlewis
Mon, 2014-04-21 06:47
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
1,804 by rmoretti
Thu, 2018-06-28 14:28
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
1,805 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,806 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
1,809 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
0
1,809 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,810 by rmoretti
Sun, 2016-02-21 06:38
Normal topic What is the best way to make a residue-specific SASA constraint?
by jmaly » Thu, 2020-01-23 16:40
2
1,810 by matteoferla
Wed, 2020-01-29 12:18
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,812 by nawsad
Wed, 2014-06-25 13:26
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,826 by rmoretti
Mon, 2016-11-14 15:12
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,828 by smlewis
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,829 by rmoretti
Fri, 2015-07-03 13:14
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
1,829 by smlewis
Mon, 2018-03-12 09:57
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
1,830 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
1,840 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
1,843 by smlewis
Mon, 2014-04-21 06:47
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
1,844 by smlewis
Mon, 2014-04-21 06:47
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,845 by rmoretti
Thu, 2016-04-28 15:49
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,846 by smlewis
Mon, 2014-04-21 06:47
Normal topic params file for beta-amino acids
by phonez » Mon, 2021-03-29 18:30
4
1,848 by everyday847
Thu, 2021-04-01 11:59
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,849 by rmoretti
Wed, 2015-02-18 09:19
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
1,851 by jkleman
Tue, 2018-07-31 13:19
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,852 by smlewis
Mon, 2014-04-21 06:47
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,853 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
1,866 by smlewis
Thu, 2016-08-11 13:16
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
1,868 by ylwang
Sat, 2019-11-23 06:26
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
1,868 by rmoretti
Tue, 2021-02-09 09:22
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,869 by Lati
Fri, 2015-11-20 03:32
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,874 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,874 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,876 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,877 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,882 by frichter
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,882 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
1,887 by smlewis
Mon, 2014-04-21 06:47
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,888 by smlewis
Mon, 2014-04-21 06:47
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
1,892 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,892 by MA
Thu, 2017-04-27 18:53
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
1,892 by sid
Mon, 2014-04-21 06:47
Normal topic Fitting a structure with an unrecognized residue to an EM density
by ahmadkhalifa » Tue, 2017-12-05 14:44
2
1,892 by ahmadkhalifa
Wed, 2017-12-06 12:30
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
1,894 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,896 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,896 by rmoretti
Fri, 2014-09-12 09:11
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,897 by rmoretti
Mon, 2017-05-15 09:03
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