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Rosetta 3 - General

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Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,911 by rmoretti
Thu, 2016-09-08 07:56
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
1,911 by guowuchen
Wed, 2022-03-30 04:20
Normal topic Extracting PDBs from a Silent file: "Can't find residue type for ARG"
by avsrivatsa » Sat, 2020-10-17 16:20
2
1,917 by avsrivatsa
Mon, 2020-10-19 18:16
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,921 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,924 by smlewis
Mon, 2016-08-22 10:39
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,924 by rmoretti
Mon, 2017-03-06 08:37
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,927 by rmoretti
Sat, 2017-12-02 10:22
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,934 by rmoretti
Wed, 2016-06-29 10:20
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
1,940 by matteoferla
Mon, 2022-01-10 06:44
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,942 by rmoretti
Thu, 2016-04-28 14:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,943 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,945 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,956 by Trentage
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,967 by rmoretti
Tue, 2016-07-12 08:40
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,967 by jalan
Thu, 2020-04-23 05:19
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,971 by rmoretti
Wed, 2016-06-15 16:06
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,974 by szcshr123
Fri, 2021-02-26 14:41
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,978 by rmoretti
Thu, 2022-04-07 07:51
Normal topic How to set start coordinates for ligand when doing protein_ligand docking
by Huanhuan » Wed, 2021-08-18 21:09
3
1,979 by matteoferla
Fri, 2021-08-20 08:37
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
2
1,983 by Alvin Yang
Wed, 2023-10-04 03:34
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,990 by smlewis
Wed, 2017-06-28 06:59
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,993 by ssrb
Tue, 2016-07-12 10:02
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
2,001 by rmoretti
Tue, 2021-02-09 13:45
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
2,001 by matteoferla
Wed, 2019-08-21 11:58
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
2,002 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
2,007 by smlewis
Mon, 2014-04-21 06:47
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
2,017 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
2,029 by smlewis
Tue, 2018-06-19 10:31
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
2,029 by rmoretti
Sat, 2015-09-19 13:20
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
2,032 by rmoretti
Wed, 2021-03-17 13:52
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
2,036 by smlewis
Mon, 2014-04-21 06:48
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
2,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
2,045 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
0
2,045 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
2,046 by rmoretti
Fri, 2015-07-03 13:51
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
2,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
2,047 by smlewis
Tue, 2015-12-22 08:31
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
2,050 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
2,051 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
2,053 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
2,054 by smlewis
Mon, 2014-04-21 06:47
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
2,054 by smlewis
Sun, 2016-01-10 10:02
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
2,057 by smlewis
Sun, 2016-03-13 15:25
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
2,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
2,060 by smlewis
Mon, 2014-04-21 06:47
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
2,060 by yifeili1983
Mon, 2019-04-15 22:34
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
2,061 by rmoretti
Tue, 2015-10-27 08:46
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
2,064 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
2,064 by nannemdp
Tue, 2020-05-26 06:33
Normal topic protein surface design
by tatsiana.bylund » Sun, 2019-09-15 03:44
2
2,067 by dfcoelho
Tue, 2019-11-19 10:16
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
2,068 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
2,073 by rmoretti
Fri, 2018-08-03 08:59
Normal topic can't access rosetta commercial license download via given URL from CoMotion
by y_atsmonraz » Tue, 2023-02-14 11:04
8
2,074 by rmoretti
Thu, 2023-02-16 13:48
Normal topic Does Rosetta have a separate refinement function?
by ylwang » Tue, 2019-09-24 19:08
2
2,076 by ylwang
Tue, 2019-10-08 18:34
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
2,078 by smlewis
Mon, 2014-04-21 06:47
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
3
2,079 by rmoretti
Tue, 2023-05-09 15:32
Normal topic perturb_temp flag
by Loki01 » Tue, 2018-11-27 05:06
2
2,085 by rmoretti
Wed, 2019-04-03 09:58
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
2,085 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
2,087 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
2,090 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
2,092 by nawsad
Fri, 2014-06-20 03:00
Normal topic Compilation error
by zgcarvalho » Fri, 2010-02-12 06:58
1
2,096 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
2,098 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
2,105 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
2,108 by smlewis
Mon, 2018-04-16 16:32
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
2,112 by vmulligan
Tue, 2019-03-26 11:30
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
2,115 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
2,116 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
2,118 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
2,119 by nawsad
Wed, 2014-06-25 13:26
Normal topic Job Distribution Error
by ac.research » Mon, 2020-02-10 08:22
2
2,121 by ac.research
Fri, 2020-02-14 23:33
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
2,126 by David
Tue, 2019-01-22 12:23
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
2,127 by rmoretti
Wed, 2017-03-29 12:37
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
2,129 by smlewis
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
2,131 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,134 by smlewis
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
2,137 by rmoretti
Fri, 2015-07-03 13:14
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,138 by rmoretti
Mon, 2016-11-14 15:12
Normal topic recommended function type for cross links data
by meravb » Sun, 2018-08-05 06:57
2
2,139 by rmoretti
Mon, 2018-08-20 11:51
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,139 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Undocumented changes in BackrubDD
by abhi_pe_acharya » Mon, 2018-07-16 00:24
2
2,143 by abhi_pe_acharya
Sun, 2018-08-05 22:03
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
2,146 by rmoretti
Tue, 2016-07-12 08:36
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
2,151 by rmoretti
Fri, 2016-04-08 08:43
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
2,153 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,163 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
2,163 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
2,166 by rmoretti
Mon, 2016-11-14 14:26
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
2,166 by rmoretti
Fri, 2017-04-21 07:52
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
2,168 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Expanding the silent file
by jharamesh » Fri, 2018-01-12 09:15
2
2,173 by rmoretti
Mon, 2018-01-15 14:35
Normal topic Question about CartesianMD
by orionshih » Sun, 2018-04-29 21:07
2
2,176 by orionshih
Tue, 2018-05-01 21:16
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
2,177 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Total Rama Score
by jcminerlanl » Thu, 2018-05-10 07:19
1
2,178 by rmoretti
Thu, 2018-06-28 14:28
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
2,183 by smlewis
Mon, 2014-04-21 06:47
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
2,184 by rmoretti
Fri, 2019-03-29 14:43
Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
2,185 by ylwang
Tue, 2020-03-24 19:35
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
2,187 by sid
Mon, 2014-04-21 06:47
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