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Rosetta 3 - General

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Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,595 by MA
Thu, 2017-04-27 18:53
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,597 by nawsad
Wed, 2014-06-25 13:26
Normal topic H3 modelling scoring function
by aneamtu » Wed, 2017-12-27 23:10
2
1,600 by aneamtu
Mon, 2018-01-08 23:49
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,600 by rmoretti
Thu, 2016-04-28 15:49
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
1,606 by benhardy
Fri, 2021-05-07 07:22
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
1,607 by ac.research
Fri, 2017-08-18 00:53
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
1,607 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
1,613 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,617 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,619 by smlewis
Mon, 2014-04-21 06:47
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
1,621 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic De novo density assembly weights don't add up to a 100
by ahmadkhalifa » Fri, 2018-08-03 12:07
3
1,624 by rmoretti
Tue, 2019-10-22 07:05
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,628 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
0
1,628 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,634 by rmoretti
Mon, 2015-05-25 11:07
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,635 by rmoretti
Mon, 2017-05-15 09:03
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,636 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,641 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,645 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,648 by Lati
Fri, 2015-11-20 03:32
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,651 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,652 by frichter
Mon, 2014-04-21 06:47
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
1,652 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,656 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
1,657 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,658 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
1,660 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,660 by smlewis
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,661 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,664 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
1,664 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reading chloride anions
by Martin Floor » Mon, 2018-08-27 14:29
2
1,666 by Martin Floor
Tue, 2018-08-28 13:21
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
1,675 by rmoretti
Fri, 2020-11-06 08:04
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
1,676 by sid
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,686 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,687 by rmoretti
Fri, 2014-09-12 09:11
Normal topic how to do ensemble docking using rosetta3.1
by lqzhang » Mon, 2010-01-11 10:31
1
1,689 by sid
Mon, 2014-04-21 06:47
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,690 by rmoretti
Wed, 2015-02-18 09:17
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,691 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
1,691 by smlewis
Mon, 2014-04-21 06:47
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
1,691 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,692 by smlewis
Mon, 2014-04-21 06:47
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
1,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
1,695 by lah435
Mon, 2017-04-03 19:50
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
1,697 by smlewis
Mon, 2018-11-19 13:20
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
1,697 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,697 by smlewis
Mon, 2014-04-21 06:47
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
1,699 by rmoretti
Mon, 2016-09-05 09:39
Normal topic RestrictToRepackingRLT and PreventRepackingRLT
by coomteng@gmail.com » Mon, 2018-03-05 11:19
2
1,704 by coomteng@gmail.com
Tue, 2018-03-06 02:31
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
1,705 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,705 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,706 by smlewis
Mon, 2014-04-21 06:47
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,708 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Mon, 2009-08-24 19:16
1
1,711 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,716 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,717 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,717 by rmoretti
Wed, 2018-01-31 14:57
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
1,718 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
1,723 by smlewis
Wed, 2018-04-04 10:42
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,724 by nawsad
Fri, 2014-06-20 02:48
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
1,726 by smlewis
Mon, 2014-04-21 06:47
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
1,727 by ac.research
Fri, 2017-03-31 07:36
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,728 by smlewis
Mon, 2014-04-21 06:47
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,730 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,743 by yuvals
Mon, 2014-10-06 15:02
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
1,744 by brspurri
Thu, 2020-08-20 13:22
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,747 by fred
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,751 by albumns
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
1,755 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,755 by smlewis
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
1,758 by frichter
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,758 by smlewis
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,759 by smlewis
Mon, 2014-04-21 06:47
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,760 by smlewis
Mon, 2014-04-21 06:48
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,761 by jtmacd
Mon, 2014-04-21 06:47
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
1,763 by rmoretti
Tue, 2016-07-12 08:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,765 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,773 by smlewis
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
1,773 by rmoretti
Fri, 2018-08-03 08:42
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,774 by rmoretti
Mon, 2014-06-09 10:05
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,774 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,782 by rmoretti
Tue, 2014-06-10 11:34
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,784 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
1,785 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
1,788 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
1,791 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,794 by rmoretti
Mon, 2014-04-21 06:48
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,798 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,799 by smlewis
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,806 by rmoretti
Mon, 2014-12-15 02:37
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,810 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
1,811 by rmoretti
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
1,815 by DmitriiN
Wed, 2016-06-01 15:46
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,816 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,818 by smlewis
Mon, 2014-04-21 06:47
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