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Rosetta 3 - General

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
3,429 by Victor
Fri, 2014-01-31 10:41
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
3,414 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
3,408 by rmoretti
Tue, 2014-04-01 08:12
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
3,406 by rmoretti
Mon, 2018-08-20 11:45
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,394 by MRH
Mon, 2014-04-21 06:48
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,387 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
3,384 by salvatta
Mon, 2018-09-10 10:04
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
3,381 by rmoretti
Mon, 2014-04-21 06:47
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
3,377 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
3,357 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,356 by smlewis
Thu, 2016-04-21 16:00
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
3,348 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,342 by rmoretti
Tue, 2018-04-10 16:00
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,333 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
3,328 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,321 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
3,315 by rmoretti
Mon, 2017-11-06 07:36
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,312 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,306 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
3,299 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
3,294 by zlni
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
3,289 by abiadak
Mon, 2014-04-21 06:47
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
3,281 by freedman
Mon, 2017-03-06 13:24
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
3,280 by smlewis
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
3,279 by smlewis
Mon, 2014-04-21 06:47
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
3,279 by msardejani
Sun, 2016-08-07 17:49
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
3,276 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic Fold tree error
by mansi » Tue, 2010-05-18 07:43
2
3,268 by mansi
Mon, 2014-04-21 06:47
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
3,267 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
3,256 by rmoretti
Mon, 2018-11-12 14:29
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
3,254 by franfdez
Mon, 2014-04-21 06:47
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
3,229 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,225 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
3,224 by smlewis
Wed, 2018-03-21 08:42
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
5
3,205 by matteoferla
Wed, 2021-09-29 01:58
Normal topic Rigid Body & Flexible Minimization
by Hanieh » Thu, 2014-02-06 12:37
2
3,200 by Hanieh
Fri, 2014-02-28 12:43
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
3,194 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
3,194 by smlewis
Wed, 2017-08-16 08:30
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
3,183 by matteoferla
Sat, 2017-08-05 07:18
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
3,178 by cannond
Wed, 2017-03-01 08:05
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
3,178 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
3,170 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
3,167 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
3,166 by Loki01
Thu, 2017-12-14 06:20
Normal topic How to make a resfile
by dflaher » Fri, 2017-11-03 10:26
3
3,162 by smlewis
Wed, 2017-11-08 12:08
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
3,156 by rmoretti
Mon, 2018-03-19 12:35
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
3,149 by varma
Mon, 2014-04-21 06:47
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
3,144 by smlewis
Mon, 2014-04-21 06:47
Normal topic build parallel version of Rosetta
by atfrank » Tue, 2009-10-06 22:33
2
3,140 by smlewis
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,139 by jarek
Mon, 2014-04-21 06:48
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,137 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
3,129 by tsjain
Mon, 2014-04-21 06:47
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
3,122 by smlewis
Tue, 2018-07-03 11:22
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
3,120 by alejandro
Mon, 2014-04-21 06:47
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
3,119 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,117 by harshkhare
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
3,112 by sumukh21
Mon, 2014-04-21 06:47
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,101 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Homology modeling
by mchldln » Mon, 2009-08-17 13:04
2
3,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,096 by gipsonb
Mon, 2014-04-21 06:47
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
3,096 by attesor
Thu, 2015-10-22 03:42
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
3,081 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,077 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
3,073 by zharmad
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
3,065 by eunwook
Mon, 2014-04-21 06:47
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
3,064 by smlewis
Wed, 2016-03-30 09:52
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
3,063 by smlewis
Mon, 2014-04-21 06:47
Normal topic homo-oligomeric proteins.............folddock+symmetry+abinito
by anusmita_sahoo » Thu, 2010-04-29 02:59
2
3,062 by biofisikx
Mon, 2014-04-21 06:47
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
3,054 by rmoretti
Wed, 2015-12-16 11:22
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
3,054 by smlewis
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,047 by jrcf
Fri, 2015-10-16 10:57
Normal topic Fix missing backbone residues
by Matthys » Mon, 2010-05-03 09:03
2
3,042 by Matthys
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
3,037 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
3,036 by smlewis
Mon, 2014-04-21 06:47
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
3,035 by frits
Mon, 2014-04-21 06:48
Normal topic Rosetta can't handle symmetric fold and dock for >10-subunit protein?
by myang » Mon, 2011-09-26 11:52
3
3,029 by IAndre
Mon, 2014-04-21 06:47
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
3,025 by alejandro
Mon, 2014-04-21 06:47
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
3,025 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta numbering with missing occupancies
by ShaneOConnor » Fri, 2011-10-07 16:18
2
3,025 by ShaneOConnor
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
3,019 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,018 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,011 by rmoretti
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
3,009 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
3,005 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,002 by inder
Mon, 2014-04-21 06:47
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
2,984 by rmoretti
Mon, 2016-11-14 14:21
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
2,982 by rmoretti
Mon, 2018-01-15 15:34
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
2,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
2,978 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,974 by rmoretti
Mon, 2014-04-21 06:47
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
2,969 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
2,969 by einew
Mon, 2014-04-21 06:47
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
2,962 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
2,953 by smlewis
Mon, 2014-04-21 06:47
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
2,953 by szypanther
Mon, 2014-05-26 22:03
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
2,949 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
2,941 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
2,940 by helenah
Tue, 2020-11-03 04:33
Normal topic Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI
by linucks » Tue, 2018-02-13 03:41
4
2,933 by linucks
Fri, 2018-02-23 08:08
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