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Rosetta 3 - General

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Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
2,411 by jrcf
Fri, 2016-02-12 16:41
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,224 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
4,547 by rmoretti
Thu, 2016-02-04 09:29
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
2,556 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
1,673 by smlewis
Sun, 2016-01-24 03:24
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
2,226 by smlewis
Thu, 2016-01-14 08:19
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
1,724 by achambe
Wed, 2016-01-13 10:46
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
1,884 by Lati
Tue, 2016-01-12 13:28
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,284 by smlewis
Sun, 2016-01-10 10:02
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,327 by smlewis
Tue, 2015-12-22 08:31
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
1,936 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,763 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
4,438 by rosend
Fri, 2015-12-18 19:39
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
14,197 by rmoretti
Fri, 2015-12-18 14:26
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
2,591 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,594 by aloshbau
Mon, 2015-12-14 23:30
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,304 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,703 by Al52
Tue, 2015-12-01 18:22
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
1,790 by road runner
Tue, 2015-12-01 10:08
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,485 by Lati
Fri, 2015-11-20 03:32
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
4,098 by rmoretti
Tue, 2015-11-10 11:52
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
4,362 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
5,600 by rmoretti
Tue, 2015-10-27 09:11
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,315 by rmoretti
Tue, 2015-10-27 08:46
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
2,665 by attesor
Thu, 2015-10-22 03:42
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,674 by jrcf
Fri, 2015-10-16 10:57
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
1,783 by gerdos
Fri, 2015-10-16 03:01
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
4,719 by ssrb
Tue, 2015-09-22 08:35
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
1,873 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
4,946 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
3,230 by cheyuk
Sun, 2015-09-20 02:08
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,292 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
2,481 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
2,985 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
14,754 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,458 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,026 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
3,247 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
3,757 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,035 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,315 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
1,978 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
1,874 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
4,461 by kbuhr
Tue, 2015-07-14 04:30
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
2,425 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
1,822 by MarkW
Fri, 2015-07-03 15:36
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
5,789 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,328 by rmoretti
Fri, 2015-07-03 13:51
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
43,226 by rmoretti
Fri, 2015-07-03 13:29
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,274 by rmoretti
Fri, 2015-07-03 13:24
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,403 by rmoretti
Fri, 2015-07-03 13:14
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,630 by rmoretti
Fri, 2015-07-03 13:04
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
1,825 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
4,463 by jwillis
Sat, 2015-06-27 21:11
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,483 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
6,287 by rmoretti
Mon, 2015-06-01 15:27
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
2,108 by pitmand
Tue, 2015-05-26 12:20
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,399 by rmoretti
Mon, 2015-05-25 11:07
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,249 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
3,637 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
8,251 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
2,690 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,364 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
3,996 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
8,853 by rmoretti
Fri, 2015-04-24 12:15
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
1,945 by straore
Fri, 2015-04-17 01:54
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
4,416 by rmoretti
Thu, 2015-04-16 10:09
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,773 by rmoretti
Thu, 2015-04-02 12:52
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,044 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,380 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,498 by rmoretti
Mon, 2015-03-30 14:43
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,723 by jadolfbr
Fri, 2015-02-27 11:08
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
17,868 by rmoretti
Wed, 2015-02-18 09:23
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,479 by rmoretti
Wed, 2015-02-18 09:19
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,521 by rmoretti
Wed, 2015-02-18 09:17
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,074 by lah435
Thu, 2015-02-12 09:16
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
9,936 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
4,638 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
9,175 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
3,023 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
7,630 by rmoretti
Mon, 2015-02-09 09:09
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
3,030 by jwillis
Sat, 2015-02-07 20:40
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
4,441 by cossio
Thu, 2015-01-29 11:50
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
4,100 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,122 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
6,135 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
1,880 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
3,179 by zaldini
Wed, 2015-01-07 20:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
3,306 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
3,122 by zaldini
Fri, 2015-01-02 05:38
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
2,259 by smlewis
Tue, 2014-12-23 13:58
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
5,070 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
3,209 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
4,178 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,060 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,640 by rmoretti
Mon, 2014-12-15 02:37
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
4,504 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,172 by phanvy
Wed, 2014-12-10 00:17
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
3,396 by cossio
Thu, 2014-12-04 05:41
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
2,554 by rmoretti
Wed, 2014-12-03 18:52
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