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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,466 by rmoretti
Wed, 2017-09-06 08:47
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
3,938 by ac.research
Mon, 2017-09-04 16:43
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
7,168 by smlewis
Tue, 2017-08-29 08:56
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,576 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,296 by rmoretti
Mon, 2017-08-21 09:55
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
1,531 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic Cannot run binaries after successful compilation
by ac.research » Mon, 2017-08-14 02:56
6
6,287 by ac.research
Fri, 2017-08-18 00:57
Normal topic Protein Docking Error
by ac.research » Thu, 2017-08-17 02:57
2
1,963 by ac.research
Fri, 2017-08-18 00:53
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
3,655 by smlewis
Wed, 2017-08-16 08:30
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
7,505 by rmoretti
Mon, 2017-08-14 09:06
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
3,639 by matteoferla
Sat, 2017-08-05 07:18
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
4,112 by rmoretti
Thu, 2017-08-03 09:01
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,381 by rmoretti
Thu, 2017-08-03 08:50
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,859 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
3,879 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,368 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
8,007 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
2,656 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
2,196 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,240 by linucks
Mon, 2017-07-03 09:50
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,617 by smlewis
Wed, 2017-06-28 06:59
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
3,408 by rmoretti
Wed, 2017-06-28 01:33
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,904 by rmoretti
Mon, 2017-05-15 09:03
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,909 by MA
Thu, 2017-04-27 18:53
Normal topic Adding centroid .params files for non-canonical residues based on all-atom .params files
by jcminerlanl » Thu, 2017-04-27 09:28
2
2,241 by vmulligan
Thu, 2017-04-27 16:41
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
1,826 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,639 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
3,396 by smlewis
Tue, 2017-04-18 08:33
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
2,299 by rmoretti
Fri, 2017-04-14 08:37
Normal topic constraints
by lah435 » Sun, 2017-03-12 03:25
2
2,025 by lah435
Mon, 2017-04-03 19:50
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
2,039 by ac.research
Fri, 2017-03-31 07:36
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,739 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
4,059 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
4,026 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,426 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,529 by smlewis
Wed, 2017-03-22 14:02
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,735 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,324 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
4,609 by cannond
Wed, 2017-03-08 03:00
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
3,703 by freedman
Mon, 2017-03-06 13:24
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,584 by rmoretti
Mon, 2017-03-06 08:37
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
3,122 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
3,611 by cannond
Wed, 2017-03-01 08:05
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
5,272 by sunhwan
Mon, 2017-02-27 11:02
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,582 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
8,661 by rmoretti
Thu, 2017-02-02 08:32
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
5,484 by smlewis
Sun, 2017-01-15 18:14
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,354 by smlewis
Sun, 2017-01-15 18:10
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
6,363 by sk0319
Wed, 2017-01-11 10:52
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
4,622 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
2,663 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
8,671 by smlewis
Thu, 2016-12-22 13:11
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
2,774 by smlewis
Tue, 2016-12-20 10:40
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
4,735 by Karol
Thu, 2016-12-15 01:35
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
5,004 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
1,137 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,494 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic span and frags filefor multichain transmembrane protein
by zhiguang » Wed, 2016-10-26 13:28
4
3,474 by zhiguang
Tue, 2016-11-15 12:27
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
1,836 by rmoretti
Mon, 2016-11-14 15:12
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,766 by rmoretti
Mon, 2016-11-14 14:26
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
3,338 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
2,078 by rmoretti
Fri, 2016-10-14 16:43
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
2,037 by rmoretti
Fri, 2016-10-14 15:46
Normal topic How to transform a pose from symmetric into non-symmetric?
by msardejani » Tue, 2016-10-04 16:55
2
2,245 by msardejani
Wed, 2016-10-05 10:53
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
2,943 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,764 by rmoretti
Tue, 2016-09-13 07:41
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
4,269 by rmoretti
Thu, 2016-09-08 10:56
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,584 by rmoretti
Thu, 2016-09-08 07:56
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
1,994 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
15,801 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,549 by possu
Tue, 2016-08-30 16:57
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
4,385 by smlewis
Tue, 2016-08-30 13:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,554 by Karol
Mon, 2016-08-29 05:27
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,885 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,491 by smlewis
Wed, 2016-08-24 07:23
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,581 by smlewis
Mon, 2016-08-22 10:39
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
3,225 by smlewis
Mon, 2016-08-22 10:28
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
7
5,711 by krdav
Wed, 2016-08-17 12:57
Normal topic "Illegal Instruction" for particular Movers/Filters
by Jhreed » Thu, 2016-08-11 12:59
1
1,878 by smlewis
Thu, 2016-08-11 13:16
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,442 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
3,686 by msardejani
Sun, 2016-08-07 17:49
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
2,182 by sdh_h
Thu, 2016-08-04 11:22
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
2,968 by smlewis
Fri, 2016-07-29 07:43
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
3,169 by smlewis
Fri, 2016-07-22 07:31
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,089 by smlewis
Wed, 2016-07-13 23:41
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
5,309 by obdulia
Wed, 2016-07-13 09:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,642 by ssrb
Tue, 2016-07-12 10:02
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,554 by rmoretti
Tue, 2016-07-12 08:48
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,038 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
1,816 by rmoretti
Tue, 2016-07-12 08:43
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,644 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,805 by rmoretti
Tue, 2016-07-12 08:36
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
3,611 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
2,669 by felipet
Sat, 2016-07-09 09:50
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
1,116 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
2,704 by smlewis
Thu, 2016-06-30 08:44
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,621 by rmoretti
Wed, 2016-06-29 10:20
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
17,914 by smlewis
Tue, 2016-06-28 09:05
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,327 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,621 by rmoretti
Wed, 2016-06-15 16:06
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