You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
1 |
4,445 |
by rmoretti Mon, 2017-11-06 07:36 |
|
|
Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
1 |
1,874 |
by jadolfbr Wed, 2017-11-01 10:11 |
|
|
[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
996 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
|
|
[dev] determine which score_type's enabled in create_energy_method? by ipetrik_ambry » Fri, 2017-10-27 15:37 |
3 |
2,494 |
by rmoretti Mon, 2017-10-30 12:02 |
|
|
Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
4 |
3,041 |
by Srinivas23 Tue, 2017-10-24 10:58 |
|
|
Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
0 |
1,289 |
by fmerino Mon, 2017-10-16 04:02 |
|
|
Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
3,119 |
by ac.research Sun, 2017-09-24 11:25 |
|
|
Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
4,835 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
|
|
extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,622 |
by rmoretti Fri, 2017-09-08 15:15 |
|
|
Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,556 |
by rmoretti Wed, 2017-09-06 08:47 |
|
|
The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
4 |
4,137 |
by ac.research Mon, 2017-09-04 16:43 |
|
|
What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
11 |
7,557 |
by smlewis Tue, 2017-08-29 08:56 |
|
|
How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
1 |
2,733 |
by rmoretti Mon, 2017-08-28 09:32 |
|
|
Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
1 |
1,388 |
by rmoretti Mon, 2017-08-21 09:55 |
|
|
Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
1 |
1,625 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
|
|
Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
6,603 |
by ac.research Fri, 2017-08-18 00:57 |
|
|
Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
2 |
2,086 |
by ac.research Fri, 2017-08-18 00:53 |
|
|
Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
3,878 |
by smlewis Wed, 2017-08-16 08:30 |
|
|
De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
5 |
7,852 |
by rmoretti Mon, 2017-08-14 09:06 |
|
|
Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
3,841 |
by matteoferla Sat, 2017-08-05 07:18 |
|
|
Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
5 |
4,371 |
by rmoretti Thu, 2017-08-03 09:01 |
|
|
Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
3 |
2,544 |
by rmoretti Thu, 2017-08-03 08:50 |
|
|
How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
1 |
4,076 |
by SenyorDrew Sat, 2017-07-29 09:59 |
|
|
Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
4 |
4,130 |
by SenyorDrew Mon, 2017-07-24 11:06 |
|
|
SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
1 |
1,460 |
by jeliazkov Tue, 2017-07-18 09:51 |
|
|
B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
12 |
8,426 |
by brandon.frenz Sat, 2017-07-08 13:49 |
|
|
Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
2,802 |
by jcminerlanl Thu, 2017-07-06 09:22 |
|
|
Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,318 |
by SenyorDrew Thu, 2017-07-06 07:48 |
|
|
Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,439 |
by linucks Mon, 2017-07-03 09:50 |
|
|
Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
1 |
1,713 |
by smlewis Wed, 2017-06-28 06:59 |
|
|
Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
3 |
3,637 |
by rmoretti Wed, 2017-06-28 01:33 |
|
|
optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
1 |
1,996 |
by rmoretti Mon, 2017-05-15 09:03 |
|
|
rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
2,029 |
by MA Thu, 2017-04-27 18:53 |
|
|
Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
2 |
2,375 |
by vmulligan Thu, 2017-04-27 16:41 |
|
|
Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
1 |
1,924 |
by rmoretti Fri, 2017-04-21 07:52 |
|
|
Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
3 |
2,819 |
by rmoretti Tue, 2017-04-18 13:49 |
|
|
Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
1 |
3,503 |
by smlewis Tue, 2017-04-18 08:33 |
|
|
can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
1 |
2,462 |
by rmoretti Fri, 2017-04-14 08:37 |
|
|
constraints by lah435 » Sun, 2017-03-12 03:25 |
2 |
2,145 |
by lah435 Mon, 2017-04-03 19:50 |
|
|
Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,154 |
by ac.research Fri, 2017-03-31 07:36 |
|
|
Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
1 |
1,848 |
by rmoretti Wed, 2017-03-29 12:37 |
|
|
Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
5 |
4,277 |
by pachecoj Wed, 2017-03-29 12:32 |
|
|
Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
5 |
4,281 |
by SenyorDrew Wed, 2017-03-29 06:40 |
|
|
Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,508 |
by rmoretti Tue, 2017-03-28 09:02 |
|
|
Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,617 |
by smlewis Wed, 2017-03-22 14:02 |
|
|
[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
1 |
1,827 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
|
|
scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
2,466 |
by SergeyP Fri, 2017-03-10 11:16 |
|
|
Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
5 |
4,873 |
by cannond Wed, 2017-03-08 03:00 |
|
|
combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
3,913 |
by freedman Mon, 2017-03-06 13:24 |
|
|
Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
1 |
1,683 |
by rmoretti Mon, 2017-03-06 08:37 |
|
|
[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,327 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
|
|
Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
3,804 |
by cannond Wed, 2017-03-01 08:05 |
|
|
Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
7 |
5,533 |
by sunhwan Mon, 2017-02-27 11:02 |
|
|
Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
1 |
1,673 |
by rmoretti Thu, 2017-02-02 08:52 |
|
|
Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
10 |
9,039 |
by rmoretti Thu, 2017-02-02 08:32 |
|
|
ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
5,803 |
by smlewis Sun, 2017-01-15 18:14 |
|
|
Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,474 |
by smlewis Sun, 2017-01-15 18:10 |
|
|
Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
6,665 |
by sk0319 Wed, 2017-01-11 10:52 |
|
|
distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
4,858 |
by allan.ferrari Tue, 2017-01-03 11:15 |
|
|
relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
2,816 |
by allan.ferrari Tue, 2017-01-03 05:02 |
|
|
Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
12 |
9,128 |
by smlewis Thu, 2016-12-22 13:11 |
|
|
General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
2,931 |
by smlewis Tue, 2016-12-20 10:40 |
|
|
rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
4,997 |
by Karol Thu, 2016-12-15 01:35 |
|
|
dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
5,415 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
|
|
Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
0 |
1,198 |
by SenyorDrew Tue, 2016-12-13 14:29 |
|
|
Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,619 |
by jadolfbr Sun, 2016-12-11 10:53 |
|
|
span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
3,664 |
by zhiguang Tue, 2016-11-15 12:27 |
|
|
Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
1 |
1,928 |
by rmoretti Mon, 2016-11-14 15:12 |
|
|
Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
1,857 |
by rmoretti Mon, 2016-11-14 14:26 |
|
|
DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,491 |
by rmoretti Mon, 2016-11-14 14:21 |
|
|
Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,177 |
by rmoretti Fri, 2016-10-14 16:43 |
|
|
"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
2,140 |
by rmoretti Fri, 2016-10-14 15:46 |
|
|
How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
2,365 |
by msardejani Wed, 2016-10-05 10:53 |
|
|
Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
3,097 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
|
|
symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
1 |
1,856 |
by rmoretti Tue, 2016-09-13 07:41 |
|
|
restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
4 |
4,480 |
by rmoretti Thu, 2016-09-08 10:56 |
|
|
Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,673 |
by rmoretti Thu, 2016-09-08 07:56 |
|
|
dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,102 |
by rmoretti Mon, 2016-09-05 09:39 |
|
|
Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
16,040 |
by charlie.strauss Fri, 2016-09-02 10:08 |
|
|
Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,635 |
by possu Tue, 2016-08-30 16:57 |
|
|
BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
4,597 |
by smlewis Tue, 2016-08-30 13:47 |
|
|
Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,628 |
by Karol Mon, 2016-08-29 05:27 |
|
|
sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
3 |
3,033 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
|
|
HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,581 |
by smlewis Wed, 2016-08-24 07:23 |
|
|
Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,674 |
by smlewis Mon, 2016-08-22 10:39 |
|
|
Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,377 |
by smlewis Mon, 2016-08-22 10:28 |
|
|
Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
7 |
5,992 |
by krdav Wed, 2016-08-17 12:57 |
|
|
"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
1 |
1,985 |
by smlewis Thu, 2016-08-11 13:16 |
|
|
Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,508 |
by SenyorDrew Thu, 2016-08-11 05:56 |
|
|
[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
4 |
3,876 |
by msardejani Sun, 2016-08-07 17:49 |
|
|
reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,314 |
by sdh_h Thu, 2016-08-04 11:22 |
|
|
how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
3,115 |
by smlewis Fri, 2016-07-29 07:43 |
|
|
combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,302 |
by smlewis Fri, 2016-07-22 07:31 |
|
|
short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,311 |
by smlewis Wed, 2016-07-13 23:41 |
|
|
calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
5,575 |
by obdulia Wed, 2016-07-13 09:11 |
|
|
pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
1,738 |
by ssrb Tue, 2016-07-12 10:02 |
|
|
TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,642 |
by rmoretti Tue, 2016-07-12 08:48 |
|
|
ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
2,140 |
by rmoretti Tue, 2016-07-12 08:47 |
|
|
Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
1 |
1,936 |
by rmoretti Tue, 2016-07-12 08:43 |
|
|
No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,736 |
by rmoretti Tue, 2016-07-12 08:40 |
Log in to post new content in the forum.
