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Rosetta 3 - General

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Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,985 by rmoretti
Thu, 2016-04-28 14:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
1,410 by rmoretti
Wed, 2021-07-14 07:07
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
803 by rmoretti
Wed, 2022-09-14 09:14
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
3,480 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
3,326 by smlewis
Mon, 2014-04-21 06:47
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
2,180 by rmoretti
Mon, 2015-03-30 16:38
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,464 by rmoretti
Tue, 2016-07-12 08:47
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
2,647 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,705 by rmoretti
Thu, 2018-06-28 14:22
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
1,673 by rmoretti
Mon, 2019-08-26 15:00
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
1,649 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
1,591 by matteoferla
Thu, 2021-09-02 03:50
Normal topic Error about rifdocking step 19 motifgraft mover
by ng98 » Wed, 2024-05-22 02:25
1
208 by rmoretti
Wed, 2024-05-22 08:07
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,405 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,345 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in cluster?
by nitroamos » Mon, 2011-11-21 12:53
1
2,398 by smlewis
Mon, 2014-04-21 06:47
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
2,235 by rmoretti
Tue, 2014-11-11 13:22
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,531 by smlewis
Sun, 2016-01-24 03:24
Normal topic Robetta nstruct number
by ac.research » Tue, 2017-01-31 14:27
1
1,948 by rmoretti
Thu, 2017-02-02 08:52
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
1,668 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,946 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,302 by nawsad
Fri, 2014-06-20 02:48
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,976 by smlewis
Mon, 2016-08-22 10:39
Normal topic Rosetta Antibody: Unable to open file and terminates
by denatured » Thu, 2019-12-12 11:26
1
2,668 by denatured
Fri, 2019-12-13 11:19
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
1,326 by rmoretti
Wed, 2021-01-20 07:39
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
985 by vmulligan
Thu, 2022-03-03 18:48
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
2,479 by smlewis
Mon, 2014-04-21 06:47
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
2,131 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
2,146 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
2,013 by rmoretti
Wed, 2016-06-15 16:06
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
2,364 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
2,395 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,966 by rmoretti
Mon, 2017-03-06 08:37
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
1,655 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
2,095 by smlewis
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,507 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
3,221 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,682 by rmoretti
Wed, 2014-07-16 08:07
Normal topic known disulfides in Remodel sequence
by matteoferla » Mon, 2018-09-10 06:43
1
1,942 by matteoferla
Thu, 2018-09-13 06:21
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
1
2,542 by paulbo
Sun, 2024-02-04 22:03
Normal topic About Rosetta Scoring Function
by wszjzhang » Wed, 2010-02-03 09:22
1
2,523 by smlewis
Mon, 2014-04-21 06:47
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
1
990 by JasonIsaac
Mon, 2022-12-05 18:41
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
2,644 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Fri, 2010-01-08 08:26
1
2,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,819 by rmoretti
Wed, 2017-09-06 08:47
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
2,538 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
4,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic Intel Compiler and OS X Intel
by bene » Tue, 2009-10-20 10:20
1
2,654 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,891 by smlewis
Wed, 2017-03-22 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,825 by jkleman
Sat, 2018-04-14 10:55
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,836 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
831 by almeida85
Fri, 2022-08-12 05:56
Normal topic Error about rifdocking
by ng98 » Mon, 2024-01-08 16:21
1
450 by rmoretti
Tue, 2024-01-09 23:41
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
2,206 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
3,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
2,250 by rmoretti
Fri, 2014-09-12 09:11
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
6,260 by rmoretti
Tue, 2015-11-10 11:52
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
2,401 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,677 by smlewis
Wed, 2020-03-04 07:40
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
3,271 by rmoretti
Mon, 2014-04-21 06:47
Normal topic tyrosine structure error
by dave » Mon, 2012-04-30 04:38
1
2,276 by frichter
Mon, 2014-04-21 06:47
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,442 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic Structure refinement with RDC constraint
by shushunur » Thu, 2018-01-18 00:44
1
2,344 by rmoretti
Tue, 2018-01-30 09:08
Normal topic Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1"
by Xinhang » Sat, 2020-04-11 14:30
1
1,825 by vmulligan
Sat, 2020-04-11 17:40
Normal topic I Need Help on Validation for a Ligand Docking Experiment.
by tbelec » Sat, 2021-03-20 13:27
1
1,848 by matteoferla
Mon, 2021-03-22 08:29
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,618 by rmoretti
Wed, 2019-09-18 10:49
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,482 by rmoretti
Tue, 2021-02-09 12:25
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
1,188 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
794 by JW_24
Tue, 2023-01-24 04:55
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
2,317 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
2,039 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
2,558 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
2,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
2,220 by rmoretti
Fri, 2017-04-21 07:52
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
812 by rmoretti
Wed, 2022-09-07 09:19
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
2,090 by smlewis
Mon, 2014-04-21 06:47
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,614 by smlewis
Mon, 2014-04-21 06:47
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
2,491 by rmoretti
Thu, 2014-10-16 10:33
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
2,102 by smlewis
Sun, 2016-01-10 10:02
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,399 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
3,038 by reddybg
Mon, 2014-04-21 06:47
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
2,470 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,774 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
2,326 by jkleman
Tue, 2018-07-31 13:19
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
1,570 by dgront
Thu, 2021-02-11 08:30
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,663 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,436 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,918 by rmoretti
Sat, 2014-03-22 11:40
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
2,309 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
1,304 by ahuls1
Thu, 2021-07-29 13:23
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
5,648 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
3,007 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,662 by rmoretti
Mon, 2017-08-21 09:55
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
1,426 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,992 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
974 by matteoferla
Wed, 2022-07-20 10:33
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
6,404 by rmoretti
Tue, 2014-07-01 12:45
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
1,723 by ac.research
Sat, 2017-11-18 06:54
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