You are here

Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
3,379 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
2,049 by frichter
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,477 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,002 by rmoretti
Sun, 2016-02-21 06:38
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,901 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
1,354 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,266 by matteoferla
Sat, 2020-06-20 03:56
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,366 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
872 by mb0261
Mon, 2022-09-26 07:50
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,383 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,322 by IAndre
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,226 by rmoretti
Mon, 2014-12-15 02:37
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,011 by rmoretti
Thu, 2016-04-28 15:49
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,380 by connyyu
Thu, 2019-04-18 03:26
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,266 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
1,116 by rmoretti
Wed, 2021-06-23 02:17
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
2,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
2,041 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,777 by amelie
Tue, 2014-09-30 14:29
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,503 by Loki01
Wed, 2017-12-13 05:27
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,438 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
1,225 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
1
738 by aneeqh
Fri, 2022-09-02 13:36
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
32,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
2,062 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,901 by rmoretti
Fri, 2015-07-03 13:51
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,403 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
2,081 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,947 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,379 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,963 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
3,583 by smlewis
Tue, 2017-04-18 08:33
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
908 by lanselibai
Wed, 2021-06-23 14:53
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
614 by rmoretti
Tue, 2022-09-06 08:13
Normal topic unit and scientific tests
by tricia » Sat, 2009-05-09 23:29
1
2,009 by smlewis
Mon, 2014-04-21 06:47
Normal topic Compilation in Mac OS 10.6
by rjn » Thu, 2010-02-18 12:35
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,081 by fred
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
2,092 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,566 by rmoretti
Wed, 2018-11-21 14:14
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
655 by ajasja
Mon, 2022-05-23 07:19
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,416 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,598 by rmoretti
Tue, 2015-07-14 15:27
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
2,168 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
2,023 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,786 by smlewis
Wed, 2017-06-28 06:59
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,460 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
1,063 by zivben
Sat, 2021-07-31 08:16
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
2,147 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,357 by achambe
Wed, 2016-01-13 10:46
Normal topic symmetric Docking- TRIMER in Rosetta 3.4 ?
by sdg_lab » Thu, 2012-04-12 04:22
1
3,459 by rmoretti
Mon, 2014-04-21 06:47
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
2,080 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,966 by nawsad
Wed, 2014-06-25 13:26
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
2,099 by rmoretti
Wed, 2015-09-02 12:48
Normal topic HBNetStapleInterface
by sdh_h » Wed, 2016-08-24 03:30
1
1,649 by smlewis
Wed, 2016-08-24 07:23
Normal topic What is the best protocol to predict the missing residues in X-ray crystallisation?
by lanselibai » Sun, 2019-12-29 04:44
1
1,247 by matteoferla
Wed, 2020-01-01 04:30
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
995 by rmoretti
Tue, 2021-02-09 10:29
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
2,332 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,806 by rmoretti
Tue, 2016-07-12 08:40
Normal topic SNUGDOCK
by adva » Sun, 2017-07-16 00:49
1
1,538 by jeliazkov
Tue, 2017-07-18 09:51
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
2,202 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predicting conformations of mutated residues
by Delfosse57 » Tue, 2023-08-22 12:26
1
211 by rmoretti
Wed, 2023-08-23 08:26
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,332 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
3,011 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,691 by rmoretti
Thu, 2016-04-28 15:57
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,788 by rmoretti
Wed, 2019-04-03 09:31
Normal topic str::out_of_range with mpiexec and relax
by pedro.guillem » Fri, 2020-06-19 10:39
1
1,671 by pedro.guillem
Wed, 2020-06-24 04:49
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
993 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Parallel computing?
by mansi » Thu, 2010-08-19 08:39
1
2,205 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:20
1
3,446 by rmoretti
Mon, 2014-04-21 06:47
Normal topic symmetric design without symmetrizing the structure
by sdh_h » Tue, 2016-09-13 05:49
1
1,923 by rmoretti
Tue, 2016-09-13 07:41
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
2,867 by smlewis
Mon, 2014-04-21 06:47
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,560 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
3,004 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,437 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Amino acid post-translational modifications
by aelatico » Tue, 2018-06-19 03:29
1
1,848 by smlewis
Tue, 2018-06-19 10:31
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
2,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,487 by smlewis
Mon, 2014-04-21 06:47
Normal topic Extremely low interface scores with "local refinement"
by eminegenetics » Wed, 2017-03-29 12:24
1
1,925 by rmoretti
Wed, 2017-03-29 12:37
Normal topic Rosetta Antibody cuts off light chain?
by ziheng@mit.edu » Thu, 2019-05-02 15:17
1
1,400 by jeliazkov
Fri, 2019-05-03 07:00
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
2,226 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors Rosetta symm refine
by ms4392 » Fri, 2016-10-21 13:56
1
1,929 by rmoretti
Mon, 2016-11-14 14:26
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
1,014 by sia
Tue, 2022-07-05 05:47
Normal topic rosie github log in
by YUANXU » Tue, 2023-04-25 20:13
1
326 by Sergey
Thu, 2023-04-27 12:03
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
913 by gezmi
Sat, 2021-11-06 15:26
Normal topic How to make Rosetta's sampling more aggresive ?
by jiongzhang » Mon, 2012-03-12 11:04
1
2,161 by rmoretti
Mon, 2014-04-21 06:47
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,986 by rmoretti
Fri, 2015-07-03 13:14
Normal topic header pathways not accessable: No such file or directory
by rlwoltz » Tue, 2012-09-18 17:44
1
2,261 by smlewis
Mon, 2014-04-21 06:47
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,991 by smlewis
Mon, 2014-04-21 06:47
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
2,239 by smlewis
Mon, 2014-04-21 06:47
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
2,296 by smlewis
Mon, 2014-04-21 06:47
Normal topic File specification of binary part of silent file (especially PDB section)
by m.ebert » Wed, 2019-05-29 01:52
1
1,318 by smlewis
Wed, 2019-05-29 13:21
Normal topic Residue outside res_map range
by to-qinbin@163.com » Sat, 2022-09-10 01:56
1
872 by rmoretti
Mon, 2022-09-12 07:01
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
2,150 by jtmacd
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,564 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
2,115 by yuvals
Mon, 2014-10-06 15:02
Normal topic Ab Initio large threshold for clustering
by Swillard » Mon, 2018-11-12 14:14
1
1,549 by rmoretti
Wed, 2018-11-21 14:01
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
601 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Question about FlexPepDock score
by aelatico » Thu, 2018-07-19 20:39
1
1,610 by rmoretti
Wed, 2018-08-01 16:04
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General