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Rosetta 3 - General
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Views | Last post | |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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1,818 |
by rmoretti Tue, 2014-11-04 10:35 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
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1,650 |
by rmoretti Sat, 2015-09-19 13:20 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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1,937 |
by smlewis Mon, 2014-04-21 06:48 |
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Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
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1,723 |
by rmoretti Tue, 2016-07-12 08:36 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,447 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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3,585 |
by rmoretti Fri, 2014-05-23 08:09 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,330 |
by rmoretti Fri, 2015-07-03 12:58 |
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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1,659 |
by smlewis Sun, 2016-03-13 15:25 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,367 |
by rmoretti Tue, 2017-03-28 09:02 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
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702 |
by taylorjones Wed, 2021-06-09 16:30 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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1,699 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
1 |
3,043 |
by rmoretti Mon, 2014-04-21 06:47 |
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what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
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1,851 |
by smlewis Mon, 2014-04-21 06:47 |
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problems in building rosetta3.1 (solved) by zpliu09 » Wed, 2010-03-31 02:03 |
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1,705 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Dock by swoody » Tue, 2009-11-10 16:20 |
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2,619 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
1 |
1,151 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
1 |
1,010 |
by rmoretti Tue, 2021-02-09 12:35 |
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3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
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2,336 |
by smlewis Mon, 2014-04-21 06:47 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
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1,966 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
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2,719 |
by Anonymous Mon, 2014-04-21 06:47 |
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segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
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1,884 |
by yarovoy Wed, 2016-03-30 12:37 |
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demo documentation by lshi » Fri, 2009-08-28 08:51 |
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1,830 |
by smlewis Mon, 2014-04-21 06:47 |
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abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
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4,285 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
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1,894 |
by smlewis Mon, 2014-04-21 06:47 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
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2,896 |
by rmoretti Thu, 2015-12-03 15:14 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
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1,296 |
by jadolfbr Fri, 2018-11-09 09:17 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,088 |
by rmoretti Wed, 2020-04-01 10:10 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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481 |
by matteoferla Fri, 2022-06-03 01:09 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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1,825 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB output sum by enoee » Fri, 2010-07-16 12:29 |
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1,842 |
by smlewis Mon, 2014-04-21 06:47 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
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2,022 |
by rmoretti Fri, 2015-07-03 13:04 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,026 |
by rmoretti Mon, 2019-11-04 12:54 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
1 |
1,012 |
by rmoretti Tue, 2021-02-09 12:02 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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76 |
by rmoretti Mon, 2023-02-06 14:35 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
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2,950 |
by franfdez Mon, 2014-04-21 06:47 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
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1,110 |
by smlewis Fri, 2019-06-28 13:56 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
818 |
by matteoferla Mon, 2021-08-09 01:53 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
1 |
2,272 |
by smlewis Mon, 2014-04-21 06:47 |
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Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
1 |
1,404 |
by rmoretti Mon, 2018-02-05 15:44 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
1,196 |
by AJVincelli Sun, 2018-11-25 11:09 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
1 |
2,058 |
by smlewis Fri, 2014-11-07 12:03 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
1,411 |
by nannemdp Tue, 2020-05-26 06:33 |
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Rosetta/PyRosetta on GPU by ac.research » Mon, 2017-11-06 05:18 |
1 |
3,757 |
by rmoretti Mon, 2017-11-06 07:36 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
1 |
1,293 |
by smlewis Tue, 2018-08-07 16:59 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
1 |
1,006 |
by brownbp1 Tue, 2021-02-09 12:12 |
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rebuilding and refinement by exchhattu » Tue, 2009-10-06 21:13 |
1 |
1,785 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
1 |
3,638 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
1 |
1,717 |
by rmoretti Tue, 2016-07-12 08:43 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
1 |
1,059 |
by rmoretti Mon, 2019-08-26 14:52 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
1 |
773 |
by asbelx Wed, 2021-09-08 23:19 |
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backrub and design by jtmacd » Thu, 2009-06-04 08:44 |
1 |
1,938 |
by jtmacd Mon, 2014-04-21 06:47 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
1 |
2,112 |
by smlewis Mon, 2014-04-21 06:47 |
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run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
1 |
1,812 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
1 |
3,116 |
by rmoretti Wed, 2014-12-03 18:52 |
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Rosetta matching error by purvi24 » Mon, 2018-03-12 02:38 |
1 |
1,743 |
by smlewis Mon, 2018-03-12 09:57 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
1,154 |
by rmoretti Wed, 2019-04-03 10:03 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
916 |
by windmill Thu, 2020-06-18 21:32 |
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Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
1 |
2,041 |
by rmoretti Mon, 2014-07-07 08:08 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,514 |
by rmoretti Thu, 2016-09-08 07:56 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,504 |
by rmoretti Sat, 2017-12-02 10:22 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
1 |
1,178 |
by dfcoelho Tue, 2020-02-04 07:45 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
1 |
955 |
by rmoretti Wed, 2021-02-03 14:45 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,531 |
by kaue Mon, 2014-04-21 06:47 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
1 |
2,191 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
1 |
3,647 |
by smlewis Mon, 2014-04-21 06:47 |
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Binary silent Output file reading problem by wlzhang » Sun, 2014-04-20 17:47 |
1 |
2,017 |
by wlzhang Sun, 2014-04-20 18:17 |
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pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
1,565 |
by ssrb Tue, 2016-07-12 10:02 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
1 |
999 |
by rmoretti Tue, 2020-10-13 11:40 |
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problems with cluster program by umeshghosh » Thu, 2010-04-08 07:45 |
1 |
2,205 |
by smlewis Mon, 2014-04-21 06:47 |
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About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
1 |
2,080 |
by smlewis Mon, 2014-04-21 06:47 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
1 |
1,926 |
by rmoretti Mon, 2014-06-09 10:05 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
1 |
2,758 |
by rmoretti Fri, 2015-07-03 13:24 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
1 |
1,829 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
1 |
2,640 |
by IAndre Mon, 2014-04-21 06:47 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
1 |
3,606 |
by rmoretti Tue, 2018-04-10 16:00 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
1 |
2,640 |
by rmoretti Wed, 2014-09-17 10:06 |
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Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,002 |
by rmoretti Fri, 2016-10-14 16:43 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
1 |
1,323 |
by jyy Mon, 2020-01-13 17:19 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
1,949 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg energy components by japgar » Tue, 2010-07-13 13:20 |
1 |
32,634 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster Error by justin » Mon, 2010-04-26 00:06 |
2 |
2,546 |
by justin Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,149 |
by jhbrown Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,144 |
by inder Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
4,757 |
by Ashafix Wed, 2014-02-19 06:53 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
3,695 |
by rmoretti Wed, 2015-01-21 10:05 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
1,806 |
by MA Thu, 2017-04-27 18:53 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,070 |
by aloshbau Mon, 2015-12-14 23:30 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,414 |
by jalan Thu, 2020-04-23 05:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
951 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
2 |
425 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,370 |
by exchhattu Mon, 2014-04-21 06:47 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,507 |
by rmoretti Thu, 2015-08-06 09:21 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
2 |
2,494 |
by jarod Mon, 2014-04-21 06:47 |
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Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
2,572 |
by zdn3023 Mon, 2014-04-21 06:47 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
2 |
3,346 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
1,923 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,726 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
2,716 |
by alejandro Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,760 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,082 |
by aloshbau Sun, 2016-02-14 20:14 |
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