You are here

Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,818 by rmoretti
Tue, 2014-11-04 10:35
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,650 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,937 by smlewis
Mon, 2014-04-21 06:48
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,723 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Issues with residues and structure changing with FlexPepDock; is this normal?
by rnelson » Tue, 2017-08-08 10:06
1
1,447 by Ora Schueler-Furman
Sun, 2017-08-20 00:54
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,585 by rmoretti
Fri, 2014-05-23 08:09
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,330 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,659 by smlewis
Sun, 2016-03-13 15:25
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,367 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
702 by taylorjones
Wed, 2021-06-09 16:30
Normal topic Where is the flag -preserve_input_cb?
by mdyini » Wed, 2011-03-09 14:40
1
1,699 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homology Model gives output - but completely wrong!
by Julix » Wed, 2012-10-31 10:10
1
3,043 by rmoretti
Mon, 2014-04-21 06:47
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,851 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,705 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
2,619 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
1,151 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic Help with filtering (Rosetta scripts)
by wentlewi » Sat, 2020-10-24 10:12
1
1,010 by rmoretti
Tue, 2021-02-09 12:35
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
1,966 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
2,719 by Anonymous
Mon, 2014-04-21 06:47
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,884 by yarovoy
Wed, 2016-03-30 12:37
Normal topic demo documentation
by lshi » Fri, 2009-08-28 08:51
1
1,830 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,285 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,894 by smlewis
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,896 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Rosetta script to relax a neighborhood only
by matteoferla » Mon, 2018-10-29 03:34
1
1,296 by jadolfbr
Fri, 2018-11-09 09:17
Normal topic Is there other online server for generate fragment?
by ylwang » Wed, 2020-04-01 01:39
1
1,088 by rmoretti
Wed, 2020-04-01 10:10
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
481 by matteoferla
Fri, 2022-06-03 01:09
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,825 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,842 by smlewis
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,022 by rmoretti
Fri, 2015-07-03 13:04
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,026 by rmoretti
Mon, 2019-11-04 12:54
Normal topic constraint are not imposed during protein-ligand docking
by rohi » Wed, 2020-12-02 11:28
1
1,012 by rmoretti
Tue, 2021-02-09 12:02
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
1
76 by rmoretti
Mon, 2023-02-06 14:35
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
2,950 by franfdez
Mon, 2014-04-21 06:47
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,110 by smlewis
Fri, 2019-06-28 13:56
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
818 by matteoferla
Mon, 2021-08-09 01:53
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,272 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculate ddG in mutation scan of a homodimer
by zachdebruine » Thu, 2018-02-01 10:02
1
1,404 by rmoretti
Mon, 2018-02-05 15:44
Normal topic Relax output mmCIF file to a particular path
by AJVincelli » Sun, 2018-11-25 11:04
1
1,196 by AJVincelli
Sun, 2018-11-25 11:09
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
2,058 by smlewis
Fri, 2014-11-07 12:03
Normal topic Protein Interface Design using PSSM
by ccruz » Sun, 2020-05-24 14:27
1
1,411 by nannemdp
Tue, 2020-05-26 06:33
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
3,757 by rmoretti
Mon, 2017-11-06 07:36
Normal topic ab initio struction prediction
by Negarsardar » Mon, 2018-08-06 15:50
1
1,293 by smlewis
Tue, 2018-08-07 16:59
Normal topic clustering ligand binding mood by ligand RMSD
by rohi » Tue, 2021-01-26 21:11
1
1,006 by brownbp1
Tue, 2021-02-09 12:12
Normal topic rebuilding and refinement
by exchhattu » Tue, 2009-10-06 21:13
1
1,785 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
3,638 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
1,717 by rmoretti
Tue, 2016-07-12 08:43
Normal topic Unable to create col_complex.pdb file
by sayan500 » Tue, 2019-07-30 22:08
1
1,059 by rmoretti
Mon, 2019-08-26 14:52
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
773 by asbelx
Wed, 2021-09-08 23:19
Normal topic backrub and design
by jtmacd » Thu, 2009-06-04 08:44
1
1,938 by jtmacd
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
2,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,812 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
3,116 by rmoretti
Wed, 2014-12-03 18:52
Normal topic Rosetta matching error
by purvi24 » Mon, 2018-03-12 02:38
1
1,743 by smlewis
Mon, 2018-03-12 09:57
Normal topic Rosetta params for taxol
by ahmadkhalifa » Sat, 2019-03-30 22:37
1
1,154 by rmoretti
Wed, 2019-04-03 10:03
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
916 by windmill
Thu, 2020-06-18 21:32
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,041 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,514 by rmoretti
Thu, 2016-09-08 07:56
Normal topic fastdesign with constraints in RosettaScripts
by staciekim » Wed, 2017-11-29 13:33
1
1,504 by rmoretti
Sat, 2017-12-02 10:22
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,178 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic There is a problem executing “rosetta_scripts.static.linuxgccrelease ”
by zjya » Tue, 2021-02-02 23:44
1
955 by rmoretti
Wed, 2021-02-03 14:45
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,531 by kaue
Mon, 2014-04-21 06:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,191 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,647 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binary silent Output file reading problem
by wlzhang » Sun, 2014-04-20 17:47
1
2,017 by wlzhang
Sun, 2014-04-20 18:17
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,565 by ssrb
Tue, 2016-07-12 10:02
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
999 by rmoretti
Tue, 2020-10-13 11:40
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,205 by smlewis
Mon, 2014-04-21 06:47
Normal topic About RosettaScript examples
by jiongzhang » Thu, 2012-03-08 10:50
1
2,080 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,926 by rmoretti
Mon, 2014-06-09 10:05
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,758 by rmoretti
Fri, 2015-07-03 13:24
Normal topic have trouble with "relax" models
by wszjzhang » Thu, 2010-01-28 10:02
1
1,829 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,640 by IAndre
Mon, 2014-04-21 06:47
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,606 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,640 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
2,002 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,323 by jyy
Mon, 2020-01-13 17:19
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,949 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg energy components
by japgar » Tue, 2010-07-13 13:20
1
32,634 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
2,546 by justin
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,149 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,144 by inder
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,757 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,695 by rmoretti
Wed, 2015-01-21 10:05
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,806 by MA
Thu, 2017-04-27 18:53
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,070 by aloshbau
Mon, 2015-12-14 23:30
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,414 by jalan
Thu, 2020-04-23 05:19
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
951 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
425 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,370 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,507 by rmoretti
Thu, 2015-08-06 09:21
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
2,494 by jarod
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
2,572 by zdn3023
Mon, 2014-04-21 06:47
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
3,346 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
1,923 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,726 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
2,716 by alejandro
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,760 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
2,082 by aloshbau
Sun, 2016-02-14 20:14
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General