You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,767 |
by smlewis Wed, 2016-08-24 07:23 |
|
|
What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
1,380 |
by matteoferla Wed, 2020-01-01 04:30 |
|
|
Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
1 |
1,109 |
by rmoretti Tue, 2021-02-09 10:29 |
|
|
Parallel computing? by mansi » Thu, 2010-08-19 08:39 |
1 |
2,307 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Cluster gdtmm vs. rmsd by brspurri » Thu, 2012-04-19 08:20 |
1 |
3,556 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
1 |
2,199 |
by sid Mon, 2014-04-21 06:47 |
|
|
RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
1 |
2,794 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
1 |
2,052 |
by rmoretti Tue, 2016-09-13 07:41 |
|
|
Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
1 |
3,116 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
1 |
15,561 |
by rmoretti Sat, 2015-09-05 12:10 |
|
|
Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
1 |
1,978 |
by smlewis Tue, 2018-06-19 10:31 |
|
|
Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
2,424 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
1 |
3,112 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,803 |
by rmoretti Thu, 2016-04-28 15:57 |
|
|
Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
3,301 |
by rmoretti Wed, 2019-04-03 09:31 |
|
|
str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
1,830 |
by pedro.guillem Wed, 2020-06-24 04:49 |
|
|
parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
1 |
1,148 |
by nannemdp Sun, 2021-06-06 09:26 |
|
|
Problem with run_lips.pl script by wdyrka » Tue, 2010-09-07 11:07 |
1 |
2,335 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
2,104 |
by rmoretti Mon, 2016-11-14 14:26 |
|
|
RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
1 |
1,226 |
by sia Tue, 2022-07-05 05:47 |
|
|
rosie github log in by YUANXU » Tue, 2023-04-25 20:13 |
1 |
502 |
by Sergey Thu, 2023-04-27 12:03 |
|
|
Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,702 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
2,260 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
1 |
1,059 |
by gezmi Sat, 2021-11-06 15:26 |
|
|
How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
1 |
2,255 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
1 |
2,096 |
by rmoretti Fri, 2015-07-03 13:14 |
|
|
Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
1 |
2,195 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
1 |
2,129 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
1 |
2,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
1 |
2,076 |
by rmoretti Wed, 2017-03-29 12:37 |
|
|
Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
1,516 |
by jeliazkov Fri, 2019-05-03 07:00 |
|
|
where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
1 |
2,392 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,434 |
by smlewis Wed, 2019-05-29 13:21 |
|
|
Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
1 |
1,137 |
by rmoretti Mon, 2022-09-12 07:01 |
|
|
About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
1 |
2,449 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
1 |
2,668 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
1 |
2,226 |
by yuvals Mon, 2014-10-06 15:02 |
|
|
Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
1 |
1,669 |
by rmoretti Wed, 2018-11-21 14:01 |
|
|
mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
1 |
726 |
by matteoferla Thu, 2022-06-09 14:41 |
|
|
Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
1 |
1,725 |
by rmoretti Wed, 2018-08-01 16:04 |
|
|
error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
1 |
1,451 |
by rmoretti Tue, 2021-02-09 12:19 |
|
|
Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
1 |
680 |
by rmoretti Mon, 2023-02-06 14:42 |
|
|
header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
1 |
2,362 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
1 |
2,021 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,387 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
2,065 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
1 |
2,133 |
by rmoretti Thu, 2018-06-28 14:28 |
|
|
What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
1 |
2,464 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
1 |
2,432 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
3,089 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
1 |
1,326 |
by rmoretti Tue, 2021-04-13 06:42 |
|
|
Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
1 |
831 |
by rmoretti Tue, 2022-06-28 11:06 |
|
|
Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
1 |
2,218 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
1 |
2,044 |
by nawsad Fri, 2014-06-20 03:00 |
|
|
loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
1 |
2,012 |
by rmoretti Thu, 2015-08-06 09:28 |
|
|
"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
1 |
2,249 |
by smlewis Thu, 2016-08-11 13:16 |
|
|
Error running RosettaAntibodyDesign application by SenyorDrew » Mon, 2017-10-30 08:13 |
1 |
2,059 |
by jadolfbr Wed, 2017-11-01 10:11 |
|
|
I_sc by Soler » Sat, 2022-02-12 00:16 |
1 |
1,088 |
by rmoretti Fri, 2022-02-18 11:14 |
|
|
Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
1 |
2,132 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
build rosetta by cross-platform compiler by jarod » Fri, 2010-05-07 21:49 |
1 |
2,024 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Helix at loop site by berk » Fri, 2013-05-31 07:04 |
1 |
2,281 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
1 |
2,108 |
by rmoretti Tue, 2016-07-12 08:36 |
|
|
Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
1 |
1,817 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
|
|
energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,762 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
question about protein docking results by albumns » Thu, 2010-11-25 08:19 |
1 |
2,227 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
3,553 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
1 |
2,042 |
by vmulligan Tue, 2019-03-26 11:30 |
|
|
Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
1 |
2,072 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
1 |
3,344 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
1 |
1,965 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
1 |
2,147 |
by rmoretti Tue, 2014-11-04 10:35 |
|
|
RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
1 |
1,993 |
by rmoretti Sat, 2015-09-19 13:20 |
|
|
Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
1 |
2,011 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
1 |
2,149 |
by sid Mon, 2014-04-21 06:47 |
|
|
Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
1 |
3,340 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
1 |
516 |
by ajasja Wed, 2023-04-05 00:20 |
|
|
how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
1 |
2,806 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
1 |
2,537 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,963 |
by rmoretti Fri, 2014-05-23 08:09 |
|
|
How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
1 |
2,803 |
by rmoretti Fri, 2015-07-03 12:58 |
|
|
Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
1 |
2,972 |
by reddybg Mon, 2014-04-21 06:47 |
|
|
Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
1 |
2,005 |
by smlewis Sun, 2016-03-13 15:25 |
|
|
Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,694 |
by rmoretti Tue, 2017-03-28 09:02 |
|
|
Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
1 |
1,106 |
by taylorjones Wed, 2021-06-09 16:30 |
|
|
ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
1 |
2,228 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
1 |
3,353 |
by rmoretti Thu, 2015-12-03 15:14 |
|
|
Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
1 |
1,673 |
by jadolfbr Fri, 2018-11-09 09:17 |
|
|
Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
1 |
1,455 |
by rmoretti Wed, 2020-04-01 10:10 |
|
|
Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
1 |
909 |
by matteoferla Fri, 2022-06-03 01:09 |
|
|
Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
1 |
1,542 |
by Rick_Baker Wed, 2019-09-11 15:35 |
|
|
Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
1 |
1,393 |
by rmoretti Tue, 2021-02-09 12:35 |
|
|
Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
1 |
2,240 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
3,053 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
1 |
2,223 |
by yarovoy Wed, 2016-03-30 12:37 |
|
|
abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
1 |
4,718 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
1 |
3,333 |
by franfdez Mon, 2014-04-21 06:47 |
|
|
Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,495 |
by smlewis Fri, 2019-06-28 13:56 |
|
|
Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
1,147 |
by matteoferla Mon, 2021-08-09 01:53 |
|
|
Compilation error by zgcarvalho » Fri, 2010-02-12 06:58 |
1 |
2,061 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Calculate ddG in mutation scan of a homodimer by zachdebruine » Thu, 2018-02-01 10:02 |
1 |
1,786 |
by rmoretti Mon, 2018-02-05 15:44 |
Log in to post new content in the forum.
