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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,832 by rmoretti
Fri, 2016-10-14 16:43
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,163 by jyy
Mon, 2020-01-13 17:19
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,580 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,730 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,198 by rmoretti
Tue, 2018-01-30 08:29
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,284 by rmoretti
Fri, 2017-09-08 15:15
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,178 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
847 by matteoferla
Fri, 2020-07-24 03:06
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,160 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
1,820 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,123 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
852 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,000 by yuvals
Sat, 2014-06-21 02:17
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
801 by rmoretti
Tue, 2021-02-09 11:30
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,208 by smlewis
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,044 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,064 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,710 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,344 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,922 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,254 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
452 by cryosky
Fri, 2021-09-17 22:04
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,633 by rmoretti
Sat, 2018-03-17 10:43
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,720 by smlewis
Mon, 2014-04-21 06:47
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,559 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,318 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,353 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
811 by rmoretti
Tue, 2021-02-09 09:37
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,763 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,751 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,664 by rmoretti
Wed, 2015-06-17 12:43
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
1,927 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,094 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,029 by smlewis
Thu, 2018-06-28 13:34
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,120 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,303 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,109 by rmoretti
Mon, 2018-03-19 09:08
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,009 by vmulligan
Mon, 2019-04-08 14:49
Normal topic total score
by score » Mon, 2010-05-03 02:03
1
1,868 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,653 by Lati
Fri, 2015-11-20 03:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
131 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
1,575 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
2
162 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
2,711 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
2,407 by aroop
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,134 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaCM: "Ligands must be added to all templates"
by lanselibai » Tue, 2021-06-22 10:42
2
555 by lanselibai
Wed, 2021-06-23 13:21
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
2,411 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,947 by Al52
Tue, 2015-12-01 18:22
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
2,346 by doranhen
Mon, 2014-04-21 06:47
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,349 by jtmacd
Mon, 2014-04-21 06:48
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
3,130 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,389 by attesor
Fri, 2014-10-31 04:23
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
2,686 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,166 by qlj
Thu, 2014-03-06 22:20
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,342 by lah435
Thu, 2015-02-12 09:16
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
2,406 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,486 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
2,439 by molon
Mon, 2014-04-21 06:47
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
3,412 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
2,266 by swoody
Mon, 2014-04-21 06:47
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
1,563 by mao_x
Thu, 2019-08-08 01:37
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
997 by rohi
Tue, 2020-10-13 09:15
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
2,697 by zhisheng
Mon, 2014-04-21 06:47
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,254 by aaj
Mon, 2016-02-29 04:45
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,323 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
215 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,251 by zwenthor
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,984 by smlewis
Mon, 2014-04-21 06:47
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04
2
561 by matteoferla
Thu, 2021-10-07 09:31
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
2,489 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,780 by ytao
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,798 by rmoretti
Tue, 2014-06-03 11:45
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
3,040 by attesor
Thu, 2015-10-22 03:42
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
2,273 by felipet
Sat, 2016-07-09 09:50
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
3,394 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
3,360 by Victor
Fri, 2014-01-31 10:41
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,957 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,297 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to minimize only a few key residues' orientation
by Ronghai Cheng » Mon, 2018-11-05 18:37
2
1,711 by Ronghai Cheng
Tue, 2018-11-13 21:56
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
126 by asbelx
Mon, 2022-06-06 23:15
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,243 by jarod
Mon, 2014-04-21 06:47
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
1,701 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,922 by rmoretti
Mon, 2014-04-21 06:47
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,138 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,085 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,127 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
803 by sgaray
Fri, 2021-06-25 11:26
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
2,343 by westleys
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,930 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50
2
2,843 by doranhen
Mon, 2014-04-21 06:47
Normal topic Add hemes to cytochrome structures
by BuddySphinx » Sun, 2018-12-16 13:46
2
1,340 by rmoretti
Fri, 2019-03-29 14:43
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,305 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic Ddg calculation for a metalloprotein using APBS
by dfcoelho » Tue, 2019-11-19 10:06
2
1,021 by dfcoelho
Wed, 2019-11-20 05:39
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
3,389 by ctaylor
Mon, 2014-04-21 06:47
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
2,134 by ac.research
Sat, 2019-08-03 08:12
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