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Rosetta 3 - General
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
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2,283 |
by rmoretti Thu, 2017-08-03 08:50 |
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
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3,280 |
by smlewis Mon, 2014-04-21 06:47 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
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4,165 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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3,598 |
by rmoretti Mon, 2014-04-21 06:48 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
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2,720 |
by matteoferla Mon, 2018-02-26 02:05 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
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3,586 |
by smlewis Wed, 2017-11-08 12:08 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
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4,519 |
by jurkm Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
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3,726 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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1,928 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,166 |
by smlewis Mon, 2014-04-21 06:47 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
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3,114 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
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5,074 |
by smlewis Mon, 2014-04-21 06:47 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,341 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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5,053 |
by Lindsay Mon, 2014-04-21 06:48 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
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1,309 |
by zhoubin Mon, 2021-03-01 22:11 |
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Problem creating pNNMAKE.gnu by anirbanzz » Sat, 2010-04-17 02:14 |
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3,658 |
by monica0569 Mon, 2014-04-21 06:47 |
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NOE constraints with Rosetta 3.1 by mpiuzzi » Wed, 2010-02-24 02:40 |
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3,094 |
by mpiuzzi Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
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3,299 |
by smlewis Mon, 2014-04-21 06:47 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
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3,305 |
by rmoretti Wed, 2015-12-16 11:22 |
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rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
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4,325 |
by nitroamos Mon, 2014-04-21 06:47 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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362 |
by rmoretti Thu, 2022-09-29 00:15 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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3,777 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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4,499 |
by smlewis Mon, 2014-04-21 06:47 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
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2,291 |
by ylwang Wed, 2018-11-14 03:03 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
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2,952 |
by smlewis Mon, 2014-04-21 06:47 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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2,969 |
by scombs Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,198 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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9,196 |
by rmoretti Mon, 2015-02-09 09:09 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
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1,283 |
by matteoferla Mon, 2021-09-20 06:05 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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296 |
by rmoretti Mon, 2022-11-14 07:27 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,351 |
by tsjain Mon, 2014-04-21 06:47 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
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3,848 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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1,830 |
by rmoretti Sat, 2019-03-30 12:12 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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1,313 |
by danpf Mon, 2021-05-10 10:04 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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2,785 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,161 |
by jadolfbr Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
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4,587 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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4,403 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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2,813 |
by rmoretti Mon, 2016-03-07 14:20 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,165 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
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3,234 |
by IAndre Mon, 2014-04-21 06:47 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
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4,505 |
by Ashafix Mon, 2014-04-21 06:48 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
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2,847 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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147 |
by ldx022 Sat, 2023-03-11 16:53 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,562 |
by ylwang Tue, 2020-03-24 19:35 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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3,006 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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2,334 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
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4,075 |
by dgront Mon, 2014-04-21 06:47 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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2,953 |
by fred Fri, 2014-04-04 11:34 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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1,140 |
by matteoferla Fri, 2021-08-20 08:37 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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3,312 |
by alejandro Mon, 2014-04-21 06:47 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
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699 |
by ssrb Tue, 2022-07-05 11:07 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
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4,073 |
by rmoretti Wed, 2015-08-12 15:03 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
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2,926 |
by smlewis Mon, 2014-04-21 06:47 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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4,135 |
by knutjbj Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
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2,379 |
by banshee Mon, 2014-04-21 06:48 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
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2,252 |
by mmarlett Thu, 2016-06-16 07:06 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
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1,882 |
by matteoferla Thu, 2019-08-22 05:39 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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2,339 |
by ytao Mon, 2014-04-21 06:47 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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1,904 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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1,707 |
by matteoferla Wed, 2020-01-29 12:18 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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1,085 |
by amystevens Thu, 2021-09-30 14:18 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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604 |
by rjacak Thu, 2022-03-31 10:53 |
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loop design by varma » Sun, 2012-11-04 21:25 |
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3,444 |
by varma Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,213 |
by SergeyP Sat, 2015-12-19 05:20 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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2,170 |
by msardejani Wed, 2016-10-05 10:53 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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3,146 |
by szypanther Mon, 2014-05-26 22:03 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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1,935 |
by CameronJA Wed, 2022-01-19 20:50 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
2 |
2,983 |
by ctaylor Mon, 2014-04-21 06:47 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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2,757 |
by wangyr Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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2,725 |
by Lindsay Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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2,595 |
by Run Mon, 2014-04-21 06:48 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
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2,466 |
by barak Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
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2,404 |
by doranhen Mon, 2014-04-21 06:47 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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2,580 |
by pachecoj Thu, 2014-10-09 18:15 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
1,644 |
by rmoretti Mon, 2018-01-15 14:35 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
2 |
1,613 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
2 |
1,488 |
by dfcoelho Tue, 2019-11-19 10:16 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
2 |
2,266 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,481 |
by Lindsay Mon, 2014-04-21 06:47 |
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Problems compiling tests by molon » Wed, 2009-09-30 07:33 |
2 |
2,675 |
by molon Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
4,744 |
by pepfolder Mon, 2014-04-21 06:47 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
2 |
2,651 |
by mintseris Mon, 2014-04-21 06:47 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
1,602 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,191 |
by smlewis Mon, 2014-04-21 06:47 |
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FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,506 |
by swoody Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
2 |
2,830 |
by doranhen Mon, 2014-04-21 06:47 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
4,026 |
by Lindsay Mon, 2014-04-21 06:48 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
2 |
4,066 |
by phanvy Thu, 2014-10-16 18:54 |
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Repeating sequence in Rosetta de novo protein folding by orionshih » Wed, 2018-02-07 20:52 |
2 |
1,712 |
by sheehajh Thu, 2018-02-08 21:18 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
1,568 |
by rmoretti Wed, 2019-04-03 09:58 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
2 |
1,123 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
2 |
415 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
4,376 |
by rmoretti Mon, 2014-04-21 06:47 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
2 |
3,700 |
by Apiwat Thu, 2014-04-17 09:56 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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2,742 |
by rmoretti Thu, 2018-06-28 14:09 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,378 |
by bjharris Wed, 2020-09-09 20:04 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
2 |
927 |
by patcD Wed, 2021-09-01 06:54 |
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pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
2 |
265 |
by Liviu Copoiu Tue, 2022-11-08 10:43 |
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PDB HETATM by hwillis » Thu, 2009-08-06 12:03 |
2 |
3,730 |
by smlewis Mon, 2014-04-21 06:47 |
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