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Rosetta 3 - General

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Normal topic I got so many atoms in one residue
by ylwang » Tue, 2020-03-24 04:40
3
2,187 by ylwang
Tue, 2020-03-24 19:35
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
3,661 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
4,636 by dgront
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer total score = 0.000
by vmc99 » Wed, 2019-06-12 14:06
3
3,350 by jadolfbr
Wed, 2019-06-12 20:17
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
3,378 by justin
Mon, 2014-04-21 06:47
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
3,599 by fred
Fri, 2014-04-04 11:34
Normal topic How to set start coordinates for ligand when doing protein_ligand docking
by Huanhuan » Wed, 2021-08-18 21:09
3
1,985 by matteoferla
Fri, 2021-08-20 08:37
Normal topic Hbond tripped
by alejandro » Mon, 2011-11-21 04:17
3
3,898 by alejandro
Mon, 2014-04-21 06:47
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
1,653 by ssrb
Tue, 2022-07-05 11:07
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
5,067 by rmoretti
Wed, 2015-08-12 15:03
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
4,541 by einew
Mon, 2014-04-21 06:47
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
3,641 by phanvy
Wed, 2014-07-02 23:32
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
4,078 by everyday847
Tue, 2017-11-28 13:07
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
3,562 by smlewis
Mon, 2014-04-21 06:47
Normal topic interpreting score values in silent output file after running abinitiorelax
by burkheadlab » Wed, 2011-03-09 15:42
3
3,644 by smlewis
Mon, 2014-04-21 06:47
Normal topic Figuring out the input flags required for this script
by jjung380 » Wed, 2023-04-19 14:17
3
1,162 by rmoretti
Mon, 2023-05-15 15:23
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
3,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio isolated
by ac.research » Wed, 2018-04-04 07:36
3
2,732 by smlewis
Wed, 2018-04-04 10:42
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
2,935 by smlewis
Wed, 2018-04-18 19:03
Normal topic I am a beginner in rosetta software and need help to build params file
by nais » Fri, 2011-03-18 13:37
3
7,061 by rmoretti
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
3,183 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic small molecule charge generated by molfile_to_params.py
by rohi » Wed, 2021-03-17 09:35
3
2,035 by rmoretti
Wed, 2021-03-17 13:52
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
3,417 by smlewis
Mon, 2014-04-21 06:47
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
3
2,089 by rmoretti
Tue, 2023-05-09 15:32
Normal topic undefined symbol: ZN9CifString12UnknownValueE error meaning?
by aniyaz » Wed, 2023-01-04 08:37
3
1,495 by aniyaz
Wed, 2023-01-11 01:24
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
4,534 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
4,474 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
5,435 by rmoretti
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
3,570 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,842 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Propagating the same mutation over "different" chains
by mdeklotz » Thu, 2018-07-26 09:27
3
2,791 by rmoretti
Fri, 2018-08-03 08:42
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
1,133 by rmoretti
Mon, 2023-01-30 08:04
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
4,366 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
4,269 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions about Monte Carlo Simulated Annealing algorithm in the design protocols
by mdyini » Thu, 2012-05-31 12:39
3
5,741 by smlewis
Mon, 2014-04-21 06:47
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
4,569 by rmoretti
Mon, 2014-04-21 06:48
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
3,863 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
3,695 by jklett
Mon, 2014-04-21 06:47
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
1,745 by csvajda
Mon, 2022-03-07 07:46
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
3,731 by einew
Mon, 2014-04-21 06:47
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
3,811 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
6,580 by rmoretti
Thu, 2014-07-17 09:21
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
3,951 by rmoretti
Sat, 2017-12-16 12:19
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
3,221 by rmoretti
Tue, 2021-02-09 09:22
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
4,661 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
3,253 by smlewis
Thu, 2016-06-30 08:44
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
3,574 by ctaylor
Mon, 2014-04-21 06:47
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
3,472 by smlewis
Mon, 2014-04-21 06:47
Normal topic Quesition about Relax Mode
by crysta11 » Wed, 2009-10-21 09:57
3
3,987 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta dock parallel
by mahajanr » Tue, 2010-06-01 16:04
3
4,371 by smlewis
Mon, 2014-04-21 06:47
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
4,433 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
4,904 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
4,397 by matteoferla
Sat, 2017-08-05 07:18
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
3,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
15,248 by smlewis
Mon, 2014-04-21 06:47
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
5,173 by Sandy
Fri, 2015-08-07 15:49
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
6,247 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
4,586 by smlewis
Thu, 2016-04-21 16:00
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
5,433 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
6,623 by rosend
Fri, 2015-12-18 19:39
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
3,319 by smlewis
Tue, 2016-12-20 10:40
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
3,580 by ac.research
Sun, 2017-09-24 11:25
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
1,940 by matteoferla
Mon, 2022-01-10 06:44
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
4,419 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
2,590 by smlewis
Mon, 2014-04-21 06:47
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
2,717 by Karol
Thu, 2016-05-12 07:58
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
2,261 by jalan
Sun, 2020-04-12 08:01
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
3,345 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
3,423 by smlewis
Thu, 2016-01-14 08:19
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
2
1,992 by Alvin Yang
Wed, 2023-10-04 03:34
Normal topic De novo backbone trace from fragments
by Victor Tobiasson » Tue, 2020-12-22 06:34
2
2,053 by Victor Tobiasson
Tue, 2020-12-22 09:18
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
3,490 by jos
Mon, 2014-04-21 06:47
Normal topic Rosetta Resfile header
by G Mustafa » Mon, 2020-01-20 06:45
2
2,361 by G Mustafa
Tue, 2020-01-21 06:04
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
1,219 by LanMei
Tue, 2022-03-22 20:45
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
3,801 by phanvy
Mon, 2014-04-21 03:58
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
3,480 by renedominik
Sat, 2018-07-07 03:03
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
1,717 by JW_24
Wed, 2020-09-23 01:27
Normal topic Help deciphering an input
by Elijah_Hix » Wed, 2021-09-22 11:12
2
1,411 by Elijah_Hix
Thu, 2021-09-23 10:13
Normal topic Docking antibody to membrane protein
by Yegor_Ko » Thu, 2023-10-12 07:37
2
660 by Yegor_Ko
Fri, 2023-10-20 01:35
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
6,483 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
6,229 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,975 by szcshr123
Fri, 2021-02-26 14:41
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
3,156 by exchhattu
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
4,325 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
4,128 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
2,472 by benhardy
Fri, 2021-05-07 07:22
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
1,354 by lanselibai
Thu, 2021-06-24 10:16
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,748 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
3,241 by petrikigor
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
4,966 by aneamtu
Thu, 2018-01-18 00:56
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
2,155 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
1,409 by hong wei
Thu, 2021-11-25 02:46
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
1,031 by brubin
Tue, 2022-12-20 13:26
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
3,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,980 by frichter
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
2,133 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
3,196 by lvtun
Mon, 2014-04-21 06:47
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
4,035 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,811 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,514 by jrcf
Fri, 2016-02-12 16:41
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