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Rosetta 3 - General
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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4,534 |
by jadolfbr Mon, 2014-04-21 21:05 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
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3,182 |
by smlewis Thu, 2016-06-30 08:44 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
15,118 |
by smlewis Mon, 2014-04-21 06:47 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
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5,104 |
by Sandy Fri, 2015-08-07 15:49 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,296 |
by smlewis Mon, 2014-04-21 06:47 |
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score terms by qlj » Wed, 2013-07-03 08:00 |
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4,354 |
by rmoretti Mon, 2014-04-21 06:48 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
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4,303 |
by matteoferla Sat, 2017-08-05 07:18 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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3,466 |
by scombs Mon, 2014-04-21 06:47 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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6,123 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
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4,409 |
by smlewis Thu, 2016-04-21 16:00 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,474 |
by rosend Fri, 2015-12-18 19:39 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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3,237 |
by smlewis Tue, 2016-12-20 10:40 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
3 |
3,490 |
by ac.research Sun, 2017-09-24 11:25 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
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1,866 |
by matteoferla Mon, 2022-01-10 06:44 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
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1,025 |
by Zehui Zhou Fri, 2023-02-03 05:51 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,722 |
by smlewis Mon, 2014-04-21 06:47 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
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3,983 |
by franfdez Mon, 2014-04-21 06:47 |
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how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
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4,472 |
by rmoretti Tue, 2014-04-01 08:12 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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4,280 |
by rmoretti Mon, 2015-03-30 16:58 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
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3,157 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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4,173 |
by rmoretti Wed, 2014-10-29 14:30 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,998 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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3,626 |
by jklett Mon, 2014-04-21 06:47 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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2,607 |
by rmoretti Tue, 2019-10-22 07:05 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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3,510 |
by ctaylor Mon, 2014-04-21 06:47 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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4,258 |
by MRH Mon, 2014-04-21 06:48 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
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16,500 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,874 |
by rmoretti Thu, 2015-04-30 16:09 |
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Calling a Rosetta xml script in a Python script gives fail to validate error by ahmadkhalifa » Tue, 2018-03-06 08:00 |
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4,299 |
by rmoretti Mon, 2018-03-19 12:35 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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1,253 |
by rmoretti Mon, 2022-07-18 11:56 |
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build local user guide by coomteng@gmail.com » Wed, 2018-03-28 13:55 |
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2,789 |
by coomteng@gmail.com Wed, 2018-03-28 14:58 |
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what's the difference between recovery and sequence identity by Lindsay » Thu, 2012-04-26 05:46 |
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4,952 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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3,421 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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5,624 |
by rmoretti Mon, 2014-04-21 06:48 |
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Quesition about Relax Mode by crysta11 » Wed, 2009-10-21 09:57 |
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3,889 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
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3,173 |
by rmoretti Tue, 2017-04-18 13:49 |
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Converting charmm parameter files (.par) by ajasja » Mon, 2014-09-29 07:19 |
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4,197 |
by jcminerlanl Tue, 2017-12-19 14:03 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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3,886 |
by frits Mon, 2014-04-21 06:48 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
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5,416 |
by pholland Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
3 |
3,942 |
by eunwook Mon, 2014-04-21 06:47 |
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running Rosetta locally using commands generated by the Robetta web server by cneale » Sat, 2014-03-15 11:48 |
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4,303 |
by cneale Fri, 2014-03-21 18:13 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
2,474 |
by matteoferla Thu, 2020-05-14 07:01 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
3 |
3,485 |
by ela Thu, 2018-08-09 08:04 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
5,263 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,711 |
by smlewis Mon, 2016-08-22 10:28 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,937 |
by renedominik Mon, 2018-06-04 00:04 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
3 |
3,252 |
by smlewis Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
3 |
4,770 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
3 |
3,635 |
by ssrb Tue, 2018-03-06 14:15 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
3 |
4,529 |
by smlewis Mon, 2014-04-21 06:47 |
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Only 430 models are generated for membrane prediction by justin » Wed, 2010-01-06 00:04 |
3 |
3,649 |
by smlewis Mon, 2014-04-21 06:47 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
3,502 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
3 |
3,216 |
by smlewis Mon, 2014-04-21 06:47 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
3,383 |
by jadolfbr Mon, 2014-04-21 06:48 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
3,465 |
by rmoretti Mon, 2015-05-25 11:00 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
3 |
3,707 |
by alejandro Mon, 2014-04-21 06:47 |
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force point mutation with fixbb by Anonymous » Wed, 2012-06-13 09:15 |
3 |
3,974 |
by smlewis Mon, 2014-04-21 06:47 |
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spline constraint by jadolfbr » Mon, 2012-06-25 04:43 |
3 |
4,002 |
by smlewis Mon, 2014-04-21 06:47 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
3 |
2,294 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
4,397 |
by smlewis Mon, 2014-04-21 06:47 |
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The question about protonation of Rosetta by asbelx » Tue, 2017-12-19 05:44 |
3 |
4,462 |
by rmoretti Mon, 2018-01-15 15:34 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
3 |
4,179 |
by vanita Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,538 |
by jhbrown Mon, 2014-04-21 06:47 |
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Error running design in 3.4 by inder » Thu, 2012-07-05 19:27 |
2 |
3,543 |
by inder Mon, 2014-04-21 06:47 |
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smoothly kill a mpirun process by fred » Tue, 2014-02-18 06:06 |
2 |
5,337 |
by Ashafix Wed, 2014-02-19 06:53 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
4,282 |
by rmoretti Wed, 2015-01-21 10:05 |
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rosetta compile by MA » Wed, 2017-04-26 00:46 |
2 |
2,298 |
by MA Thu, 2017-04-27 18:53 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,519 |
by aloshbau Mon, 2015-12-14 23:30 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,900 |
by jalan Thu, 2020-04-23 05:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,424 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
2 |
968 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
2 |
837 |
by varunmc99 Fri, 2023-05-12 11:49 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
2 |
4,090 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,470 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
2 |
3,716 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
3,251 |
by jadolfbr Mon, 2014-04-21 06:48 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,822 |
by exchhattu Mon, 2014-04-21 06:47 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
3,006 |
by rmoretti Thu, 2015-08-06 09:21 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,811 |
by kbuhr Tue, 2015-07-14 04:30 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,999 |
by smlewis Mon, 2014-04-21 06:47 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
3,055 |
by MRH Mon, 2014-04-21 06:48 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
2 |
1,845 |
by j.schmue Tue, 2020-01-28 13:31 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,789 |
by smlewis Mon, 2014-04-21 06:47 |
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,961 |
by Apiwat Thu, 2014-04-17 09:56 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
2 |
3,844 |
by Awagner7 Tue, 2020-04-28 10:51 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
2 |
3,131 |
by alejandro Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
3,231 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,569 |
by aloshbau Sun, 2016-02-14 20:14 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,533 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
2 |
1,078 |
by almeida85 Thu, 2022-08-11 00:32 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
2 |
3,073 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
2 |
4,067 |
by JuliusSu Fri, 2014-08-08 02:07 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
4,143 |
by rmoretti Tue, 2016-07-12 08:18 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
2 |
4,127 |
by ltrabuco Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,858 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
3,279 |
by phanvy Wed, 2014-12-10 00:17 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
2 |
2,832 |
by rmoretti Mon, 2016-03-14 07:58 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,399 |
by ac.research Fri, 2017-03-31 07:36 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
2 |
1,315 |
by lanselibai Wed, 2021-06-23 13:21 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,536 |
by smlewis Mon, 2014-04-21 06:47 |
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