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Rosetta 3 - General
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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by jadolfbr Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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by smlewis Mon, 2014-04-21 06:47 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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2,682 |
by smlewis Tue, 2016-12-20 10:40 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,210 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
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363 |
by Ken Wed, 2022-08-17 08:04 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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by almeida85 Mon, 2022-09-19 07:22 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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2,802 |
by Trentage Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,133 |
by IAndre Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
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4,754 |
by pepfolder Mon, 2014-04-21 06:47 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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375 |
by matteoferla Fri, 2022-06-17 10:38 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
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2,242 |
by ndousis Mon, 2014-04-21 06:47 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
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2,552 |
by kaue Mon, 2014-04-21 06:47 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
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2,072 |
by rmoretti Thu, 2016-04-28 16:25 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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420 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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by ialvy Tue, 2022-08-30 00:00 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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1,854 |
by rmoretti Tue, 2014-11-11 13:22 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
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5,596 |
by rosend Fri, 2015-12-18 19:39 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,294 |
by smlewis Mon, 2014-04-21 06:47 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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3,014 |
by rmoretti Mon, 2014-04-21 06:48 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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4,084 |
by Martin Floor Mon, 2014-04-21 06:47 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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by rmoretti Thu, 2016-04-28 15:19 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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by tisozaki Tue, 2021-12-14 17:16 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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3,734 |
by rmoretti Wed, 2015-01-21 10:05 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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by rmoretti Mon, 2023-02-06 14:35 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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1,857 |
by aneamtu Mon, 2018-01-08 23:49 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,174 |
by rmoretti Mon, 2014-04-21 06:48 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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2,207 |
by smlewis Mon, 2014-04-21 06:47 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
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by smlewis Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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by burkheadlab Mon, 2014-04-21 06:47 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,304 |
by rmoretti Mon, 2018-03-19 09:08 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
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1,445 |
by smlewis Wed, 2016-08-24 07:23 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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by alejandro Mon, 2014-04-21 06:47 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
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by smlewis Mon, 2014-04-21 06:47 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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by fmerino Mon, 2017-10-16 04:02 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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by smlewis Mon, 2014-04-21 06:48 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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by rmoretti Tue, 2021-02-09 10:29 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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by Elijah_Hix Thu, 2021-09-23 10:13 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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by Wenithor Sat, 2021-10-09 07:23 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,040 |
by rmoretti Tue, 2021-02-09 12:35 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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8,187 |
by smlewis Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,771 |
by einew Mon, 2014-04-21 06:47 |
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high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
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12,290 |
by albumns Mon, 2014-04-21 06:47 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
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by felipet Sat, 2016-07-09 09:50 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
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15,451 |
by rmoretti Mon, 2018-01-15 15:37 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
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3,252 |
by biofisikx Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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by rmoretti Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
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by smlewis Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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by gobli033 Mon, 2014-04-21 06:47 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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2,869 |
by smlewis Fri, 2016-07-29 07:43 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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by wwwmrzkwww Sun, 2021-08-15 00:19 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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3,942 |
by zaldini Fri, 2015-01-02 05:38 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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1,778 |
by jkleman Tue, 2018-07-31 13:19 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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12,439 |
by rmoretti Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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2,935 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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1,792 |
by smlewis Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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by brspurri Mon, 2014-04-21 06:47 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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6,117 |
by Anonymous Mon, 2014-04-21 06:47 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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by patcD Wed, 2021-09-01 06:54 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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1,815 |
by rmoretti Wed, 2015-02-18 09:19 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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by haom Tue, 2020-09-01 18:50 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
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by smlewis Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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by lanselibai Fri, 2014-12-12 10:27 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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2,840 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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by smlewis Mon, 2014-04-21 06:47 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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by mb0261 Thu, 2022-06-30 10:48 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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by JasonIsaac Sat, 2023-02-11 00:44 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
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3,399 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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3,952 |
by zaldini Wed, 2015-01-07 20:35 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,335 |
by albumns Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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by tianbu Mon, 2014-02-17 03:36 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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5,704 |
by smlewis Mon, 2014-04-21 06:47 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
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1,887 |
by rmoretti Wed, 2015-09-02 12:48 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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632 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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2,087 |
by smlewis Fri, 2014-11-07 12:03 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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9,365 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,445 |
by rmoretti Tue, 2019-07-09 12:31 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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6,361 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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825 |
by Anpu Thu, 2018-09-27 23:36 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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11,096 |
by Lindsay Mon, 2014-04-21 06:48 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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1,925 |
by smlewis Mon, 2014-04-21 06:47 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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9,442 |
by rmoretti Tue, 2019-07-09 12:50 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,097 |
by rmoretti Tue, 2019-07-09 15:59 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,291 |
by rmoretti Tue, 2019-07-09 15:48 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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10,670 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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3,937 |
by albumns Mon, 2014-04-21 06:47 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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1,877 |
by sid Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
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4,249 |
by smlewis Mon, 2014-04-21 06:47 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,279 |
by smlewis Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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568 |
by whiteqiu Mon, 2021-03-01 18:32 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,265 |
by ac.research Sat, 2017-11-18 06:54 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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13,807 |
by nawsad Mon, 2014-04-21 06:47 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,263 |
by Anonymous Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,210 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
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2,902 |
by zhisheng Mon, 2014-04-21 06:47 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
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2,655 |
by pitmand Tue, 2015-05-26 12:20 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,171 |
by rmoretti Wed, 2019-09-18 10:49 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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8,229 |
by arthuc01 Mon, 2014-04-21 06:47 |
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how to get reliable results for carbohydrate docking? by albumns » Sun, 2010-09-05 23:12 |
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4,446 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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4,895 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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3,144 |
by rmoretti Wed, 2014-12-03 18:52 |
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