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Rosetta 3 - General
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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1,195 |
by dgront Thu, 2021-02-11 08:30 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
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2,916 |
by rmoretti Mon, 2014-04-21 06:48 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
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9,474 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
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2,596 |
by renedominik Mon, 2018-06-04 00:04 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
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1,973 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
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11,852 |
by sabine Mon, 2014-04-21 06:47 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
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2,167 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
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2,286 |
by achambe Wed, 2016-01-13 10:46 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
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91 |
by Delfosse57 Mon, 2023-08-07 13:16 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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1,206 |
by matteoferla Fri, 2020-07-24 03:06 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,669 |
by jadolfbr Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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6,026 |
by smlewis Mon, 2014-04-21 06:47 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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2,933 |
by smlewis Tue, 2016-12-20 10:40 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,330 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
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638 |
by Ken Wed, 2022-08-17 08:04 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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360 |
by almeida85 Mon, 2022-09-19 07:22 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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2,978 |
by Trentage Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,271 |
by IAndre Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
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4,941 |
by pepfolder Mon, 2014-04-21 06:47 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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546 |
by matteoferla Fri, 2022-06-17 10:38 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
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2,408 |
by ndousis Mon, 2014-04-21 06:47 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
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2,688 |
by kaue Mon, 2014-04-21 06:47 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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105 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
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2,261 |
by rmoretti Thu, 2016-04-28 16:25 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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650 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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344 |
by ialvy Tue, 2022-08-30 00:00 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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1,993 |
by rmoretti Tue, 2014-11-11 13:22 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
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5,948 |
by rosend Fri, 2015-12-18 19:39 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,429 |
by smlewis Mon, 2014-04-21 06:47 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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3,259 |
by rmoretti Mon, 2014-04-21 06:48 |
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Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
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4,381 |
by Martin Floor Mon, 2014-04-21 06:47 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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5,140 |
by rmoretti Thu, 2016-04-28 15:19 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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603 |
by tisozaki Tue, 2021-12-14 17:16 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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3,952 |
by rmoretti Wed, 2015-01-21 10:05 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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311 |
by rmoretti Mon, 2023-02-06 14:35 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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2,047 |
by aneamtu Mon, 2018-01-08 23:49 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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3,348 |
by rmoretti Mon, 2014-04-21 06:48 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
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2,394 |
by smlewis Mon, 2014-04-21 06:47 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
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1,982 |
by smlewis Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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2,773 |
by burkheadlab Mon, 2014-04-21 06:47 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,474 |
by rmoretti Mon, 2018-03-19 09:08 |
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HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
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1,581 |
by smlewis Wed, 2016-08-24 07:23 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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3,537 |
by alejandro Mon, 2014-04-21 06:47 |
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header pathways not accessable: No such file or directory by rlwoltz » Tue, 2012-09-18 17:44 |
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2,208 |
by smlewis Mon, 2014-04-21 06:47 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,289 |
by fmerino Mon, 2017-10-16 04:02 |
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Helix at loop site by berk » Fri, 2013-05-31 07:04 |
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2,108 |
by smlewis Mon, 2014-04-21 06:48 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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933 |
by rmoretti Tue, 2021-02-09 10:29 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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1,084 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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547 |
by Wenithor Sat, 2021-10-09 07:23 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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1,206 |
by rmoretti Tue, 2021-02-09 12:35 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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8,584 |
by smlewis Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,950 |
by einew Mon, 2014-04-21 06:47 |
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high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
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13,130 |
by albumns Mon, 2014-04-21 06:47 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
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2,815 |
by felipet Sat, 2016-07-09 09:50 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
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16,766 |
by rmoretti Mon, 2018-01-15 15:37 |
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homo-oligomeric proteins.............folddock+symmetry+abinito by anusmita_sahoo » Thu, 2010-04-29 02:59 |
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3,440 |
by biofisikx Mon, 2014-04-21 06:47 |
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Homology Model gives output - but completely wrong! by Julix » Wed, 2012-10-31 10:10 |
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3,194 |
by rmoretti Mon, 2014-04-21 06:47 |
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Homology modeling by mchldln » Mon, 2009-08-17 13:04 |
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3,469 |
by smlewis Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,433 |
by gobli033 Mon, 2014-04-21 06:47 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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3,115 |
by smlewis Fri, 2016-07-29 07:43 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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691 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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4,232 |
by zaldini Fri, 2015-01-02 05:38 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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1,976 |
by jkleman Tue, 2018-07-31 13:19 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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13,190 |
by rmoretti Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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3,134 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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1,925 |
by smlewis Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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9,250 |
by brspurri Mon, 2014-04-21 06:47 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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6,514 |
by Anonymous Mon, 2014-04-21 06:47 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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1,152 |
by patcD Wed, 2021-09-01 06:54 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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151 |
by JasonIsaac Tue, 2023-05-02 03:39 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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1,942 |
by rmoretti Wed, 2015-02-18 09:19 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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794 |
by haom Tue, 2020-09-01 18:50 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
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2,572 |
by smlewis Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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5,911 |
by lanselibai Fri, 2014-12-12 10:27 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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2,969 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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2,232 |
by smlewis Mon, 2014-04-21 06:47 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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353 |
by mb0261 Thu, 2022-06-30 10:48 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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510 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
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3,678 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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4,248 |
by zaldini Wed, 2015-01-07 20:35 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,417 |
by albumns Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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10,383 |
by tianbu Mon, 2014-02-17 03:36 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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6,058 |
by smlewis Mon, 2014-04-21 06:47 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
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2,034 |
by rmoretti Wed, 2015-09-02 12:48 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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730 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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2,268 |
by smlewis Fri, 2014-11-07 12:03 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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9,834 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,653 |
by rmoretti Tue, 2019-07-09 12:31 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
6 |
6,715 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
931 |
by Anpu Thu, 2018-09-27 23:36 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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11,791 |
by Lindsay Mon, 2014-04-21 06:48 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,056 |
by smlewis Mon, 2014-04-21 06:47 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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9,968 |
by rmoretti Tue, 2019-07-09 12:50 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,250 |
by rmoretti Tue, 2019-07-09 15:59 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
1,459 |
by rmoretti Tue, 2019-07-09 15:48 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
11 |
11,417 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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4,198 |
by albumns Mon, 2014-04-21 06:47 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
1 |
2,012 |
by sid Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
3 |
4,502 |
by smlewis Mon, 2014-04-21 06:47 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
1 |
2,438 |
by smlewis Mon, 2014-04-21 06:47 |
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