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Rosetta 3 - General

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Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,556 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,045 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,702 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,340 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
3,754 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,236 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,365 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,532 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,322 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,182 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
4,907 by kbuhr
Tue, 2015-07-14 04:30
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
2,814 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,126 by MarkW
Fri, 2015-07-03 15:36
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
6,592 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,546 by rmoretti
Fri, 2015-07-03 13:51
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
49,935 by rmoretti
Fri, 2015-07-03 13:29
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,588 by rmoretti
Fri, 2015-07-03 13:24
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,618 by rmoretti
Fri, 2015-07-03 13:14
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
1,879 by rmoretti
Fri, 2015-07-03 13:04
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,138 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
4,905 by jwillis
Sat, 2015-06-27 21:11
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,701 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
7,258 by rmoretti
Mon, 2015-06-01 15:27
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
2,441 by pitmand
Tue, 2015-05-26 12:20
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,696 by rmoretti
Mon, 2015-05-25 11:07
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,647 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,247 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
9,302 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,079 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,600 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
4,602 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
10,086 by rmoretti
Fri, 2015-04-24 12:15
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,254 by straore
Fri, 2015-04-17 01:54
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
5,122 by rmoretti
Thu, 2015-04-16 10:09
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,978 by rmoretti
Thu, 2015-04-02 12:52
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,436 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,599 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,983 by rmoretti
Mon, 2015-03-30 14:43
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,963 by jadolfbr
Fri, 2015-02-27 11:08
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
20,257 by rmoretti
Wed, 2015-02-18 09:23
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,682 by rmoretti
Wed, 2015-02-18 09:19
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,728 by rmoretti
Wed, 2015-02-18 09:17
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,397 by lah435
Thu, 2015-02-12 09:16
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
11,181 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
5,300 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
10,527 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
3,546 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
8,621 by rmoretti
Mon, 2015-02-09 09:09
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
3,555 by jwillis
Sat, 2015-02-07 20:40
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
5,022 by cossio
Thu, 2015-01-29 11:50
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
4,794 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,495 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
6,940 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,181 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
3,658 by zaldini
Wed, 2015-01-07 20:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
3,782 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
3,637 by zaldini
Fri, 2015-01-02 05:38
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
2,563 by smlewis
Tue, 2014-12-23 13:58
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
5,855 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
3,690 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
4,851 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,225 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,838 by rmoretti
Mon, 2014-12-15 02:37
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
5,165 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,527 by phanvy
Wed, 2014-12-10 00:17
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
3,901 by cossio
Thu, 2014-12-04 05:41
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
2,911 by rmoretti
Wed, 2014-12-03 18:52
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
2,811 by cossio
Wed, 2014-12-03 14:51
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
8,732 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
4,232 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,205 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,254 by pachecoj
Tue, 2014-11-11 19:30
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
13,538 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,696 by rmoretti
Tue, 2014-11-11 13:22
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,893 by smlewis
Fri, 2014-11-07 12:03
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,679 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
5,631 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
6,688 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
1,831 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
7,405 by attesor
Fri, 2014-10-31 04:49
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,444 by attesor
Fri, 2014-10-31 04:23
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
3,357 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,809 by phanvy
Thu, 2014-10-16 18:54
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,900 by rmoretti
Thu, 2014-10-16 10:33
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
2,407 by phanvy
Wed, 2014-10-15 21:41
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,113 by pachecoj
Wed, 2014-10-15 15:12
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
8,804 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,368 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
4,606 by phanvy
Wed, 2014-10-08 01:42
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
11,126 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,770 by yuvals
Mon, 2014-10-06 15:02
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,419 by amelie
Tue, 2014-09-30 14:29
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
2,750 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
6,783 by rmoretti
Wed, 2014-09-24 09:57
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
5,835 by lanselibai
Mon, 2014-09-22 08:13
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,493 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,721 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
3,974 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,313 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
5,618 by rmoretti
Thu, 2014-07-17 09:21
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