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Rosetta 3 - General
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Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
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1,658 |
by smlewis Sun, 2016-03-13 15:25 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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2,782 |
by rmoretti Mon, 2016-03-07 14:20 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
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2,479 |
by aaj Mon, 2016-02-29 04:45 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,257 |
by aaj Mon, 2016-02-22 07:50 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
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2,462 |
by aaj Mon, 2016-02-22 07:43 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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1,748 |
by rmoretti Sun, 2016-02-21 06:38 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
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2,077 |
by aloshbau Sun, 2016-02-14 20:14 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
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2,943 |
by jrcf Fri, 2016-02-12 16:41 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,576 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
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5,724 |
by rmoretti Thu, 2016-02-04 09:29 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
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3,187 |
by SergeyP Thu, 2016-02-04 00:07 |
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Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
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2,062 |
by smlewis Sun, 2016-01-24 03:24 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
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2,798 |
by smlewis Thu, 2016-01-14 08:19 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
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2,121 |
by achambe Wed, 2016-01-13 10:46 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
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2,369 |
by Lati Tue, 2016-01-12 13:28 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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1,660 |
by smlewis Sun, 2016-01-10 10:02 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
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1,675 |
by smlewis Tue, 2015-12-22 08:31 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
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2,434 |
by SergeyP Sun, 2015-12-20 01:44 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,189 |
by SergeyP Sat, 2015-12-19 05:20 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
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5,527 |
by rosend Fri, 2015-12-18 19:39 |
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loop model error by albumns » Sun, 2011-04-03 00:26 |
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17,373 |
by rmoretti Fri, 2015-12-18 14:26 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
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3,268 |
by rmoretti Wed, 2015-12-16 11:22 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
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2,068 |
by aloshbau Mon, 2015-12-14 23:30 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
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2,892 |
by rmoretti Thu, 2015-12-03 15:14 |
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Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
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2,176 |
by Al52 Tue, 2015-12-01 18:22 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
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2,313 |
by road runner Tue, 2015-12-01 10:08 |
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RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
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1,809 |
by Lati Fri, 2015-11-20 03:32 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
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5,098 |
by rmoretti Tue, 2015-11-10 11:52 |
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what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
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5,198 |
by syoifczeri Mon, 2015-11-02 03:59 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
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6,826 |
by rmoretti Tue, 2015-10-27 09:11 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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1,658 |
by rmoretti Tue, 2015-10-27 08:46 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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3,297 |
by attesor Thu, 2015-10-22 03:42 |
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The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
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3,252 |
by jrcf Fri, 2015-10-16 10:57 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
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2,266 |
by gerdos Fri, 2015-10-16 03:01 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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5,774 |
by ssrb Tue, 2015-09-22 08:35 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
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2,363 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
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5,708 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
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UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
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3,936 |
by cheyuk Sun, 2015-09-20 02:08 |
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RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
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1,645 |
by rmoretti Sat, 2015-09-19 13:20 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
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3,049 |
by rmoretti Thu, 2015-09-17 12:42 |
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Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
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3,797 |
by rmoretti Tue, 2015-09-08 10:18 |
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Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
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15,195 |
by rmoretti Sat, 2015-09-05 12:10 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
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1,861 |
by rmoretti Wed, 2015-09-02 12:48 |
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Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
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2,495 |
by rmoretti Tue, 2015-08-18 17:11 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
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4,034 |
by rmoretti Wed, 2015-08-12 15:03 |
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Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
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4,464 |
by Sandy Fri, 2015-08-07 15:49 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
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2,577 |
by samuelrpita Thu, 2015-08-06 14:23 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
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1,651 |
by rmoretti Thu, 2015-08-06 09:28 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
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2,506 |
by rmoretti Thu, 2015-08-06 09:21 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,327 |
by rmoretti Tue, 2015-07-14 15:27 |
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Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
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5,154 |
by kbuhr Tue, 2015-07-14 04:30 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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3,011 |
by rmoretti Sun, 2015-07-05 14:28 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
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2,292 |
by MarkW Fri, 2015-07-03 15:36 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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6,937 |
by rmoretti Fri, 2015-07-03 14:02 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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1,669 |
by rmoretti Fri, 2015-07-03 13:51 |
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protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 |
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52,830 |
by rmoretti Fri, 2015-07-03 13:29 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
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2,755 |
by rmoretti Fri, 2015-07-03 13:24 |
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the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
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1,738 |
by rmoretti Fri, 2015-07-03 13:14 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
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2,019 |
by rmoretti Fri, 2015-07-03 13:04 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,324 |
by rmoretti Fri, 2015-07-03 12:58 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
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5,125 |
by jwillis Sat, 2015-06-27 21:11 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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1,826 |
by rmoretti Wed, 2015-06-17 12:43 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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7,714 |
by rmoretti Mon, 2015-06-01 15:27 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
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2,617 |
by pitmand Tue, 2015-05-26 12:20 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
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1,867 |
by rmoretti Mon, 2015-05-25 11:07 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
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2,876 |
by rmoretti Mon, 2015-05-25 11:00 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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4,581 |
by rmoretti Tue, 2015-05-05 14:31 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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9,760 |
by rmoretti Thu, 2015-04-30 16:25 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,278 |
by rmoretti Thu, 2015-04-30 16:09 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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1,722 |
by rmoretti Thu, 2015-04-30 07:13 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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4,876 |
by rmoretti Sat, 2015-04-25 10:05 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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10,660 |
by rmoretti Fri, 2015-04-24 12:15 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
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2,409 |
by straore Fri, 2015-04-17 01:54 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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5,450 |
by rmoretti Thu, 2015-04-16 10:09 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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2,098 |
by rmoretti Thu, 2015-04-02 12:52 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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3,642 |
by rmoretti Mon, 2015-03-30 16:58 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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1,729 |
by rmoretti Mon, 2015-03-30 16:38 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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4,239 |
by rmoretti Mon, 2015-03-30 14:43 |
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score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
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2,087 |
by jadolfbr Fri, 2015-02-27 11:08 |
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about constraints by jiongzhang » Wed, 2011-02-23 15:59 |
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21,403 |
by rmoretti Wed, 2015-02-18 09:23 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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1,796 |
by rmoretti Wed, 2015-02-18 09:19 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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1,856 |
by rmoretti Wed, 2015-02-18 09:17 |
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metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
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2,545 |
by lah435 Thu, 2015-02-12 09:16 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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11,685 |
by lanselibai Tue, 2015-02-10 14:03 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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5,578 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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11,091 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
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3,772 |
by rmoretti Mon, 2015-02-09 11:21 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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9,111 |
by rmoretti Mon, 2015-02-09 09:09 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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3,792 |
by jwillis Sat, 2015-02-07 20:40 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
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5,287 |
by cossio Thu, 2015-01-29 11:50 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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5,139 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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3,689 |
by rmoretti Wed, 2015-01-21 10:05 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
7 |
7,328 |
by rmoretti Wed, 2015-01-21 08:43 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
2 |
2,328 |
by rmoretti Fri, 2015-01-09 10:59 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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3,889 |
by zaldini Wed, 2015-01-07 20:35 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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4,025 |
by rmoretti Tue, 2015-01-06 09:58 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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3,875 |
by zaldini Fri, 2015-01-02 05:38 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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2,741 |
by smlewis Tue, 2014-12-23 13:58 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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6,268 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
3,952 |
by lanselibai Tue, 2014-12-16 10:48 |
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