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Rosetta 3 - General

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Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
3,025 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
2,125 by DmitriiN
Wed, 2016-06-01 15:46
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
14,129 by smlewis
Tue, 2016-05-17 08:06
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
2,249 by Karol
Thu, 2016-05-12 07:58
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,170 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
8,774 by rmoretti
Mon, 2016-05-09 09:23
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
2,264 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,837 by jrcf
Tue, 2016-05-03 17:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
4,215 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
2,139 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
5,654 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,541 by rmoretti
Thu, 2016-04-28 15:57
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
7,252 by rmoretti
Thu, 2016-04-28 15:53
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,852 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
4,891 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,614 by rmoretti
Thu, 2016-04-28 14:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
4,574 by banshee
Tue, 2016-04-26 00:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,056 by saxen
Mon, 2016-04-25 10:38
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
15,512 by aaj
Fri, 2016-04-22 15:20
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,761 by smlewis
Thu, 2016-04-21 16:00
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,787 by rmoretti
Fri, 2016-04-08 08:43
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,401 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,956 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
3,418 by smlewis
Wed, 2016-03-30 09:52
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
3,969 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
6,925 by jrcf
Wed, 2016-03-23 12:16
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,419 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,735 by smlewis
Sun, 2016-03-13 15:25
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
2,906 by rmoretti
Mon, 2016-03-07 14:20
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,598 by aaj
Mon, 2016-02-29 04:45
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,360 by aaj
Mon, 2016-02-22 07:50
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,564 by aaj
Mon, 2016-02-22 07:43
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,822 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
2,174 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,051 by jrcf
Fri, 2016-02-12 16:41
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,658 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
5,954 by rmoretti
Thu, 2016-02-04 09:29
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
3,310 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,148 by smlewis
Sun, 2016-01-24 03:24
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
2,923 by smlewis
Thu, 2016-01-14 08:19
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,193 by achambe
Wed, 2016-01-13 10:46
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,477 by Lati
Tue, 2016-01-12 13:28
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,734 by smlewis
Sun, 2016-01-10 10:02
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,747 by smlewis
Tue, 2015-12-22 08:31
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,539 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
2,289 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
5,723 by rosend
Fri, 2015-12-18 19:39
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
17,897 by rmoretti
Fri, 2015-12-18 14:26
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
3,405 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,159 by aloshbau
Mon, 2015-12-14 23:30
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,995 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
2,283 by Al52
Tue, 2015-12-01 18:22
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,421 by road runner
Tue, 2015-12-01 10:08
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
1,878 by Lati
Fri, 2015-11-20 03:32
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,379 by rmoretti
Tue, 2015-11-10 11:52
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
5,423 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
7,053 by rmoretti
Tue, 2015-10-27 09:11
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,738 by rmoretti
Tue, 2015-10-27 08:46
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
3,412 by attesor
Thu, 2015-10-22 03:42
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,373 by jrcf
Fri, 2015-10-16 10:57
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,368 by gerdos
Fri, 2015-10-16 03:01
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
5,954 by ssrb
Tue, 2015-09-22 08:35
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,468 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
5,861 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
4,093 by cheyuk
Sun, 2015-09-20 02:08
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,731 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
3,147 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,939 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,276 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
1,941 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,592 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
4,234 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,615 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,691 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,725 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,609 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,409 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
5,332 by kbuhr
Tue, 2015-07-14 04:30
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
3,128 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,393 by MarkW
Fri, 2015-07-03 15:36
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
7,135 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,748 by rmoretti
Fri, 2015-07-03 13:51
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19
51
54,501 by rmoretti
Fri, 2015-07-03 13:29
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,875 by rmoretti
Fri, 2015-07-03 13:24
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27
1
1,840 by rmoretti
Fri, 2015-07-03 13:14
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,106 by rmoretti
Fri, 2015-07-03 13:04
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,422 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13
2
5,283 by jwillis
Sat, 2015-06-27 21:11
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,889 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
8,027 by rmoretti
Mon, 2015-06-01 15:27
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
2,724 by pitmand
Tue, 2015-05-26 12:20
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,961 by rmoretti
Mon, 2015-05-25 11:07
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,005 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,800 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
10,086 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,408 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,788 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
5,057 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
11,012 by rmoretti
Fri, 2015-04-24 12:15
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,512 by straore
Fri, 2015-04-17 01:54
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