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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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4,359 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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3,264 |
by rmoretti Wed, 2015-01-21 10:05 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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6,414 |
by rmoretti Wed, 2015-01-21 08:43 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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1,974 |
by rmoretti Fri, 2015-01-09 10:59 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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3,324 |
by zaldini Wed, 2015-01-07 20:35 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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3,433 |
by rmoretti Tue, 2015-01-06 09:58 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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3,284 |
by zaldini Fri, 2015-01-02 05:38 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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2,358 |
by smlewis Tue, 2014-12-23 13:58 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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5,337 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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3,341 |
by lanselibai Tue, 2014-12-16 10:48 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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4,403 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,124 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
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1,707 |
by rmoretti Mon, 2014-12-15 02:37 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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4,745 |
by lanselibai Fri, 2014-12-12 10:27 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
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2,306 |
by phanvy Wed, 2014-12-10 00:17 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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3,547 |
by cossio Thu, 2014-12-04 05:41 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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2,679 |
by rmoretti Wed, 2014-12-03 18:52 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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2,489 |
by cossio Wed, 2014-12-03 14:51 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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8,010 |
by jadolfbr Wed, 2014-11-26 11:40 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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3,841 |
by rmoretti Tue, 2014-11-18 10:01 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,114 |
by lanselibai Sun, 2014-11-16 10:44 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
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2,062 |
by pachecoj Tue, 2014-11-11 19:30 |
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minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
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12,441 |
by rmoretti Tue, 2014-11-11 13:56 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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1,550 |
by rmoretti Tue, 2014-11-11 13:22 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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1,706 |
by smlewis Fri, 2014-11-07 12:03 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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1,550 |
by rmoretti Tue, 2014-11-04 10:35 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
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5,376 |
by rmoretti Mon, 2014-11-03 16:39 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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6,095 |
by rmoretti Mon, 2014-11-03 16:30 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
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1,669 |
by jadolfbr Fri, 2014-10-31 08:55 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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6,794 |
by attesor Fri, 2014-10-31 04:49 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
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2,261 |
by attesor Fri, 2014-10-31 04:23 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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3,050 |
by rmoretti Wed, 2014-10-29 14:30 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
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3,531 |
by phanvy Thu, 2014-10-16 18:54 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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1,740 |
by rmoretti Thu, 2014-10-16 10:33 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,192 |
by phanvy Wed, 2014-10-15 21:41 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
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1,918 |
by pachecoj Wed, 2014-10-15 15:12 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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8,011 |
by lanselibai Wed, 2014-10-15 01:41 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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2,167 |
by pachecoj Thu, 2014-10-09 18:15 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
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4,244 |
by phanvy Wed, 2014-10-08 01:42 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
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10,160 |
by rmoretti Mon, 2014-10-06 16:50 |
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Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
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1,638 |
by yuvals Mon, 2014-10-06 15:02 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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2,255 |
by amelie Tue, 2014-09-30 14:29 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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2,486 |
by rmoretti Mon, 2014-09-29 13:45 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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6,194 |
by rmoretti Wed, 2014-09-24 09:57 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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5,439 |
by lanselibai Mon, 2014-09-22 08:13 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
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2,323 |
by rmoretti Wed, 2014-09-17 10:06 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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1,584 |
by rmoretti Fri, 2014-09-12 09:11 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
5 |
3,587 |
by pachecoj Sat, 2014-08-09 06:33 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
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3,046 |
by JuliusSu Fri, 2014-08-08 02:07 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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5,339 |
by rmoretti Thu, 2014-07-17 09:21 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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1,943 |
by rmoretti Wed, 2014-07-16 08:07 |
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Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
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1,749 |
by rmoretti Mon, 2014-07-07 08:08 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
2,532 |
by phanvy Wed, 2014-07-02 23:32 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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4,968 |
by rmoretti Tue, 2014-07-01 12:45 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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1,768 |
by rmoretti Tue, 2014-07-01 12:21 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
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1,458 |
by rmoretti Tue, 2014-07-01 12:07 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
1,490 |
by nawsad Wed, 2014-06-25 13:26 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
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2,218 |
by phanvy Sun, 2014-06-22 23:29 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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4,821 |
by yuvals Sat, 2014-06-21 02:17 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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1,438 |
by nawsad Fri, 2014-06-20 03:00 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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1,615 |
by nawsad Fri, 2014-06-20 02:48 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
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11,159 |
by phanvy Wed, 2014-06-18 07:50 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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1,961 |
by rmoretti Mon, 2014-06-16 08:23 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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1,671 |
by rmoretti Tue, 2014-06-10 11:34 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
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1,674 |
by rmoretti Mon, 2014-06-09 10:05 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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2,650 |
by rmoretti Tue, 2014-06-03 11:45 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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2,743 |
by szypanther Mon, 2014-05-26 22:03 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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3,257 |
by rmoretti Fri, 2014-05-23 08:09 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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4,024 |
by rmoretti Sat, 2014-05-17 14:10 |
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Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
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14,225 |
by jadolfbr Wed, 2014-05-14 08:51 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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1,622 |
by rmoretti Mon, 2014-05-12 07:50 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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3,360 |
by jadolfbr Mon, 2014-04-21 21:05 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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4,367 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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2,190 |
by Run Mon, 2014-04-21 06:48 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,232 |
by vasek Mon, 2014-04-21 06:48 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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3,056 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
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1,699 |
by rmoretti Mon, 2014-04-21 06:48 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
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3,360 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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3,789 |
by rmoretti Mon, 2014-04-21 06:48 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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4,349 |
by rmoretti Mon, 2014-04-21 06:48 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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1,945 |
by rmoretti Mon, 2014-04-21 06:48 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
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3,495 |
by Lindsay Mon, 2014-04-21 06:48 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
3,425 |
by rmoretti Mon, 2014-04-21 06:48 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
2,485 |
by rmoretti Mon, 2014-04-21 06:48 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
2,830 |
by rmoretti Mon, 2014-04-21 06:48 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
5,716 |
by rmoretti Mon, 2014-04-21 06:48 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,345 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,390 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
2,530 |
by rmoretti Mon, 2014-04-21 06:48 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
5,143 |
by rmoretti Mon, 2014-04-21 06:48 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
8,032 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
1 |
3,284 |
by rmoretti Mon, 2014-04-21 06:48 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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1,561 |
by rmoretti Mon, 2014-04-21 06:48 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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7,751 |
by rmoretti Mon, 2014-04-21 06:48 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
8 |
12,483 |
by rmoretti Mon, 2014-04-21 06:48 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
4,422 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
11 |
9,695 |
by Lindsay Mon, 2014-04-21 06:48 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
2,199 |
by jtmacd Mon, 2014-04-21 06:48 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,372 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
4,332 |
by Lindsay Mon, 2014-04-21 06:48 |
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