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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
2,326 by cossio
Wed, 2014-12-03 14:51
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
7,641 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
3,659 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,053 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
1,949 by pachecoj
Tue, 2014-11-11 19:30
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
11,885 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,474 by rmoretti
Tue, 2014-11-11 13:22
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
1,610 by smlewis
Fri, 2014-11-07 12:03
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,490 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
5,212 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
5,809 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
1,585 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
6,510 by attesor
Fri, 2014-10-31 04:49
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,158 by attesor
Fri, 2014-10-31 04:23
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
2,894 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,405 by phanvy
Thu, 2014-10-16 18:54
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
1,651 by rmoretti
Thu, 2014-10-16 10:33
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
2,065 by phanvy
Wed, 2014-10-15 21:41
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
1,822 by pachecoj
Wed, 2014-10-15 15:12
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
7,581 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,057 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
4,061 by phanvy
Wed, 2014-10-08 01:42
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
9,643 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,548 by yuvals
Mon, 2014-10-06 15:02
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,170 by amelie
Tue, 2014-09-30 14:29
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
2,351 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
5,886 by rmoretti
Wed, 2014-09-24 09:57
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
5,263 by lanselibai
Mon, 2014-09-22 08:13
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,233 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,509 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
3,380 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
2,878 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
5,180 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
1,868 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
1,663 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
2,389 by phanvy
Wed, 2014-07-02 23:32
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
4,756 by rmoretti
Tue, 2014-07-01 12:45
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,689 by rmoretti
Tue, 2014-07-01 12:21
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,384 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,411 by nawsad
Wed, 2014-06-25 13:26
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,113 by phanvy
Sun, 2014-06-22 23:29
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
4,712 by yuvals
Sat, 2014-06-21 02:17
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,357 by nawsad
Fri, 2014-06-20 03:00
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
1,544 by nawsad
Fri, 2014-06-20 02:48
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
10,616 by phanvy
Wed, 2014-06-18 07:50
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
1,866 by rmoretti
Mon, 2014-06-16 08:23
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,602 by rmoretti
Tue, 2014-06-10 11:34
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
1,602 by rmoretti
Mon, 2014-06-09 10:05
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,544 by rmoretti
Tue, 2014-06-03 11:45
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
2,628 by szypanther
Mon, 2014-05-26 22:03
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,168 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
3,850 by rmoretti
Sat, 2014-05-17 14:10
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
13,559 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,543 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,227 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
4,171 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,188 by vasek
Mon, 2014-04-21 06:48
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
2,076 by Run
Mon, 2014-04-21 06:48
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
3,285 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,409 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,731 by rmoretti
Mon, 2014-04-21 06:48
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
5,470 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,242 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,291 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
2,410 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
2,925 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,632 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,227 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
3,629 by rmoretti
Mon, 2014-04-21 06:48
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
4,135 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
1,842 by rmoretti
Mon, 2014-04-21 06:48
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,329 by Lindsay
Mon, 2014-04-21 06:48
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
7,474 by rmoretti
Mon, 2014-04-21 06:48
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
11,857 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
4,222 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
9,283 by Lindsay
Mon, 2014-04-21 06:48
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,091 by jtmacd
Mon, 2014-04-21 06:48
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
4,939 by rmoretti
Mon, 2014-04-21 06:48
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
7,692 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,180 by rmoretti
Mon, 2014-04-21 06:48
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,483 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
2,572 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
4,754 by smlewis
Mon, 2014-04-21 06:48
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,008 by MRH
Mon, 2014-04-21 06:48
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,070 by rmoretti
Mon, 2014-04-21 06:48
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
2,355 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
2,756 by jarek
Mon, 2014-04-21 06:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,040 by MRH
Mon, 2014-04-21 06:48
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,647 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,280 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
4,152 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
2,833 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
3,841 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
2,489 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,467 by rmoretti
Mon, 2014-04-21 06:48
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,522 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,615 by frits
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
5,215 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,082 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
2,943 by rmoretti
Mon, 2014-04-21 06:48
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