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Rosetta 3 - General
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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2,326 |
by cossio Wed, 2014-12-03 14:51 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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7,641 |
by jadolfbr Wed, 2014-11-26 11:40 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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3,659 |
by rmoretti Tue, 2014-11-18 10:01 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,053 |
by lanselibai Sun, 2014-11-16 10:44 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
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1,949 |
by pachecoj Tue, 2014-11-11 19:30 |
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minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
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11,885 |
by rmoretti Tue, 2014-11-11 13:56 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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1,474 |
by rmoretti Tue, 2014-11-11 13:22 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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1,610 |
by smlewis Fri, 2014-11-07 12:03 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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1,490 |
by rmoretti Tue, 2014-11-04 10:35 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
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5,212 |
by rmoretti Mon, 2014-11-03 16:39 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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5,809 |
by rmoretti Mon, 2014-11-03 16:30 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
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1,585 |
by jadolfbr Fri, 2014-10-31 08:55 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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6,510 |
by attesor Fri, 2014-10-31 04:49 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
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2,158 |
by attesor Fri, 2014-10-31 04:23 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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2,894 |
by rmoretti Wed, 2014-10-29 14:30 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
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3,405 |
by phanvy Thu, 2014-10-16 18:54 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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1,651 |
by rmoretti Thu, 2014-10-16 10:33 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,065 |
by phanvy Wed, 2014-10-15 21:41 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
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1,822 |
by pachecoj Wed, 2014-10-15 15:12 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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7,581 |
by lanselibai Wed, 2014-10-15 01:41 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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2,057 |
by pachecoj Thu, 2014-10-09 18:15 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
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4,061 |
by phanvy Wed, 2014-10-08 01:42 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
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9,643 |
by rmoretti Mon, 2014-10-06 16:50 |
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Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
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1,548 |
by yuvals Mon, 2014-10-06 15:02 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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2,170 |
by amelie Tue, 2014-09-30 14:29 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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2,351 |
by rmoretti Mon, 2014-09-29 13:45 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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5,886 |
by rmoretti Wed, 2014-09-24 09:57 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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5,263 |
by lanselibai Mon, 2014-09-22 08:13 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
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2,233 |
by rmoretti Wed, 2014-09-17 10:06 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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1,509 |
by rmoretti Fri, 2014-09-12 09:11 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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3,380 |
by pachecoj Sat, 2014-08-09 06:33 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
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2,878 |
by JuliusSu Fri, 2014-08-08 02:07 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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5,180 |
by rmoretti Thu, 2014-07-17 09:21 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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1,868 |
by rmoretti Wed, 2014-07-16 08:07 |
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Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
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1,663 |
by rmoretti Mon, 2014-07-07 08:08 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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2,389 |
by phanvy Wed, 2014-07-02 23:32 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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4,756 |
by rmoretti Tue, 2014-07-01 12:45 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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1,689 |
by rmoretti Tue, 2014-07-01 12:21 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
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1,384 |
by rmoretti Tue, 2014-07-01 12:07 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
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1,411 |
by nawsad Wed, 2014-06-25 13:26 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
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2,113 |
by phanvy Sun, 2014-06-22 23:29 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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4,712 |
by yuvals Sat, 2014-06-21 02:17 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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1,357 |
by nawsad Fri, 2014-06-20 03:00 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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1,544 |
by nawsad Fri, 2014-06-20 02:48 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
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10,616 |
by phanvy Wed, 2014-06-18 07:50 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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1,866 |
by rmoretti Mon, 2014-06-16 08:23 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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1,602 |
by rmoretti Tue, 2014-06-10 11:34 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
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1,602 |
by rmoretti Mon, 2014-06-09 10:05 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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2,544 |
by rmoretti Tue, 2014-06-03 11:45 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
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2,628 |
by szypanther Mon, 2014-05-26 22:03 |
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Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
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3,168 |
by rmoretti Fri, 2014-05-23 08:09 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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3,850 |
by rmoretti Sat, 2014-05-17 14:10 |
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Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
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13,559 |
by jadolfbr Wed, 2014-05-14 08:51 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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1,543 |
by rmoretti Mon, 2014-05-12 07:50 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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3,227 |
by jadolfbr Mon, 2014-04-21 21:05 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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4,171 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,188 |
by vasek Mon, 2014-04-21 06:48 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
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2,076 |
by Run Mon, 2014-04-21 06:48 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
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3,285 |
by rmoretti Mon, 2014-04-21 06:48 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
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2,409 |
by rmoretti Mon, 2014-04-21 06:48 |
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Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
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2,731 |
by rmoretti Mon, 2014-04-21 06:48 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
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5,470 |
by rmoretti Mon, 2014-04-21 06:48 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
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2,242 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
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2,291 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
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2,410 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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2,925 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
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1,632 |
by rmoretti Mon, 2014-04-21 06:48 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
3,227 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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3,629 |
by rmoretti Mon, 2014-04-21 06:48 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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4,135 |
by rmoretti Mon, 2014-04-21 06:48 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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1,842 |
by rmoretti Mon, 2014-04-21 06:48 |
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sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
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3,329 |
by Lindsay Mon, 2014-04-21 06:48 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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7,474 |
by rmoretti Mon, 2014-04-21 06:48 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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11,857 |
by rmoretti Mon, 2014-04-21 06:48 |
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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4,222 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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9,283 |
by Lindsay Mon, 2014-04-21 06:48 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
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2,091 |
by jtmacd Mon, 2014-04-21 06:48 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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4,939 |
by rmoretti Mon, 2014-04-21 06:48 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
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7,692 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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3,180 |
by rmoretti Mon, 2014-04-21 06:48 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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1,483 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
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2,572 |
by JadAbbass Mon, 2014-04-21 06:48 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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4,754 |
by smlewis Mon, 2014-04-21 06:48 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
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3,008 |
by MRH Mon, 2014-04-21 06:48 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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4,070 |
by rmoretti Mon, 2014-04-21 06:48 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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2,355 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
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2,756 |
by jarek Mon, 2014-04-21 06:48 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
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2,040 |
by MRH Mon, 2014-04-21 06:48 |
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Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
2,647 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,280 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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4,152 |
by Lindsay Mon, 2014-04-21 06:48 |
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Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
2,833 |
by Robert Evans Mon, 2014-04-21 06:48 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
3,841 |
by Ashafix Mon, 2014-04-21 06:48 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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2,489 |
by rmoretti Mon, 2014-04-21 06:48 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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1,467 |
by rmoretti Mon, 2014-04-21 06:48 |
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opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
1,522 |
by rmoretti Mon, 2014-04-21 06:48 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
2,615 |
by frits Mon, 2014-04-21 06:48 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
5,215 |
by rmoretti Mon, 2014-04-21 06:48 |
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Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
3,082 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
2,943 |
by rmoretti Mon, 2014-04-21 06:48 |
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