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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
3,222 by smlewis
Fri, 2016-07-29 07:43
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
3,375 by smlewis
Fri, 2016-07-22 07:31
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,442 by smlewis
Wed, 2016-07-13 23:41
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
5,747 by obdulia
Wed, 2016-07-13 09:11
Normal topic pKa prediction using the Rosetta scoring function
by das » Tue, 2016-06-21 06:42
1
1,818 by ssrb
Tue, 2016-07-12 10:02
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,709 by rmoretti
Tue, 2016-07-12 08:48
Normal topic ssDNA (aptamer)/protein docking
by JulienO » Fri, 2016-05-27 02:25
1
2,225 by rmoretti
Tue, 2016-07-12 08:47
Normal topic Problems with parametrisation
by DmitriiN » Fri, 2016-05-27 04:51
1
2,008 by rmoretti
Tue, 2016-07-12 08:43
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,806 by rmoretti
Tue, 2016-07-12 08:40
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,981 by rmoretti
Tue, 2016-07-12 08:36
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
3,911 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
2,903 by felipet
Sat, 2016-07-09 09:50
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
1,217 by Jhreed
Fri, 2016-07-08 13:44
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
2,970 by smlewis
Thu, 2016-06-30 08:44
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,782 by rmoretti
Wed, 2016-06-29 10:20
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
19,482 by smlewis
Tue, 2016-06-28 09:05
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,518 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,802 by rmoretti
Wed, 2016-06-15 16:06
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
3,281 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic Parametrisation problems
by DmitriiN » Tue, 2016-05-31 09:37
2
2,345 by DmitriiN
Wed, 2016-06-01 15:46
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
15,279 by smlewis
Tue, 2016-05-17 08:06
Normal topic -RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application?
by Karol » Thu, 2016-05-12 06:30
2
2,485 by Karol
Thu, 2016-05-12 07:58
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,290 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
9,389 by rmoretti
Mon, 2016-05-09 09:23
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
2,476 by SergeyP
Thu, 2016-05-05 02:07
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
3,090 by jrcf
Tue, 2016-05-03 17:40
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
4,544 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
2,357 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Comparative Modeling databases?
by nitroamos » Wed, 2011-11-23 14:54
6
6,048 by rmoretti
Thu, 2016-04-28 16:15
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,690 by rmoretti
Thu, 2016-04-28 15:57
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
7,674 by rmoretti
Thu, 2016-04-28 15:53
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
2,010 by rmoretti
Thu, 2016-04-28 15:49
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
5,331 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,781 by rmoretti
Thu, 2016-04-28 14:47
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
4,943 by banshee
Tue, 2016-04-26 00:47
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,396 by saxen
Mon, 2016-04-25 10:38
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
16,523 by aaj
Fri, 2016-04-22 15:20
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
4,100 by smlewis
Thu, 2016-04-21 16:00
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,963 by rmoretti
Fri, 2016-04-08 08:43
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,617 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
2,101 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Errors in scorefiles after running Design
by Jhreed » Tue, 2016-03-29 10:25
4
3,730 by smlewis
Wed, 2016-03-30 09:52
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
4,222 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
8
7,490 by jrcf
Wed, 2016-03-23 12:16
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,639 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Why is it called Rosetta?
by cossio » Sun, 2016-03-13 14:28
1
1,891 by smlewis
Sun, 2016-03-13 15:25
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
3,170 by rmoretti
Mon, 2016-03-07 14:20
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,839 by aaj
Mon, 2016-02-29 04:45
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,571 by aaj
Mon, 2016-02-22 07:50
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,765 by aaj
Mon, 2016-02-22 07:43
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,000 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
2,388 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,273 by jrcf
Fri, 2016-02-12 16:41
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,790 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
6,482 by rmoretti
Thu, 2016-02-04 09:29
Normal topic change DOF of NH3 group in N terminus
by SergeyP » Wed, 2016-02-03 02:22
3
3,558 by SergeyP
Thu, 2016-02-04 00:07
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,320 by smlewis
Sun, 2016-01-24 03:24
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
3,163 by smlewis
Thu, 2016-01-14 08:19
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,357 by achambe
Wed, 2016-01-13 10:46
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,725 by Lati
Tue, 2016-01-12 13:28
Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,898 by smlewis
Sun, 2016-01-10 10:02
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
1,896 by smlewis
Tue, 2015-12-22 08:31
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,766 by SergeyP
Sun, 2015-12-20 01:44
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
2,494 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Getting an interface score from RosettaDock without docking
by rosend » Fri, 2015-12-18 14:02
3
6,109 by rosend
Fri, 2015-12-18 19:39
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
19,063 by rmoretti
Fri, 2015-12-18 14:26
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
3,694 by rmoretti
Wed, 2015-12-16 11:22
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,366 by aloshbau
Mon, 2015-12-14 23:30
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
3,196 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
2,516 by Al52
Tue, 2015-12-01 18:22
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,639 by road runner
Tue, 2015-12-01 10:08
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
2,031 by Lati
Fri, 2015-11-20 03:32
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,724 by rmoretti
Tue, 2015-11-10 11:52
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09
2
5,800 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
7,561 by rmoretti
Tue, 2015-10-27 09:11
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
1,897 by rmoretti
Tue, 2015-10-27 08:46
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
3,660 by attesor
Thu, 2015-10-22 03:42
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,645 by jrcf
Fri, 2015-10-16 10:57
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,594 by gerdos
Fri, 2015-10-16 03:01
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
6,380 by ssrb
Tue, 2015-09-22 08:35
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,697 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16
2
6,170 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
4,413 by cheyuk
Sun, 2015-09-20 02:08
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49
1
1,881 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
3,382 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
4,192 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,436 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05
1
2,099 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,805 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
4,618 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,869 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,895 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,892 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,830 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,594 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
5,587 by kbuhr
Tue, 2015-07-14 04:30
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
3,377 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,590 by MarkW
Fri, 2015-07-03 15:36
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
7,524 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,898 by rmoretti
Fri, 2015-07-03 13:51
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