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Rosetta 3 - General
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the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
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1,576 |
by rmoretti Fri, 2015-07-03 13:14 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
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1,834 |
by rmoretti Fri, 2015-07-03 13:04 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,086 |
by rmoretti Fri, 2015-07-03 12:58 |
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Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
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4,837 |
by jwillis Sat, 2015-06-27 21:11 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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1,663 |
by rmoretti Wed, 2015-06-17 12:43 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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7,079 |
by rmoretti Mon, 2015-06-01 15:27 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
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2,378 |
by pitmand Tue, 2015-05-26 12:20 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
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1,641 |
by rmoretti Mon, 2015-05-25 11:07 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
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2,573 |
by rmoretti Mon, 2015-05-25 11:00 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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4,140 |
by rmoretti Tue, 2015-05-05 14:31 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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9,124 |
by rmoretti Thu, 2015-04-30 16:25 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,014 |
by rmoretti Thu, 2015-04-30 16:09 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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1,564 |
by rmoretti Thu, 2015-04-30 07:13 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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4,493 |
by rmoretti Sat, 2015-04-25 10:05 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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9,852 |
by rmoretti Fri, 2015-04-24 12:15 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
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2,198 |
by straore Fri, 2015-04-17 01:54 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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4,995 |
by rmoretti Thu, 2015-04-16 10:09 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
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1,945 |
by rmoretti Thu, 2015-04-02 12:52 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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3,355 |
by rmoretti Mon, 2015-03-30 16:58 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
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1,565 |
by rmoretti Mon, 2015-03-30 16:38 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
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3,916 |
by rmoretti Mon, 2015-03-30 14:43 |
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score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
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1,921 |
by jadolfbr Fri, 2015-02-27 11:08 |
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about constraints by jiongzhang » Wed, 2011-02-23 15:59 |
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19,854 |
by rmoretti Wed, 2015-02-18 09:23 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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1,644 |
by rmoretti Wed, 2015-02-18 09:19 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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1,692 |
by rmoretti Wed, 2015-02-18 09:17 |
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metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
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2,340 |
by lah435 Thu, 2015-02-12 09:16 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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10,945 |
by lanselibai Tue, 2015-02-10 14:03 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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5,198 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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10,287 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
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3,468 |
by rmoretti Mon, 2015-02-09 11:21 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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8,450 |
by rmoretti Mon, 2015-02-09 09:09 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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3,464 |
by jwillis Sat, 2015-02-07 20:40 |
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Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
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4,934 |
by cossio Thu, 2015-01-29 11:50 |
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force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
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4,691 |
by masterofpuppets Tue, 2015-01-27 07:07 |
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Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
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3,438 |
by rmoretti Wed, 2015-01-21 10:05 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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6,803 |
by rmoretti Wed, 2015-01-21 08:43 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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2,125 |
by rmoretti Fri, 2015-01-09 10:59 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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3,568 |
by zaldini Wed, 2015-01-07 20:35 |
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Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
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3,691 |
by rmoretti Tue, 2015-01-06 09:58 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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3,543 |
by zaldini Fri, 2015-01-02 05:38 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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2,508 |
by smlewis Tue, 2014-12-23 13:58 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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5,719 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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3,598 |
by lanselibai Tue, 2014-12-16 10:48 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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4,736 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,204 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
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1,808 |
by rmoretti Mon, 2014-12-15 02:37 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
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5,075 |
by lanselibai Fri, 2014-12-12 10:27 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
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2,465 |
by phanvy Wed, 2014-12-10 00:17 |
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What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
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3,824 |
by cossio Thu, 2014-12-04 05:41 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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2,856 |
by rmoretti Wed, 2014-12-03 18:52 |
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What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
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2,732 |
by cossio Wed, 2014-12-03 14:51 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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8,557 |
by jadolfbr Wed, 2014-11-26 11:40 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,141 |
by rmoretti Tue, 2014-11-18 10:01 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,184 |
by lanselibai Sun, 2014-11-16 10:44 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
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2,203 |
by pachecoj Tue, 2014-11-11 19:30 |
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minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
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13,250 |
by rmoretti Tue, 2014-11-11 13:56 |
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Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
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1,658 |
by rmoretti Tue, 2014-11-11 13:22 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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1,855 |
by smlewis Fri, 2014-11-07 12:03 |
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Plexpepdock with Zn by phanvy » Wed, 2014-06-25 06:10 |
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1,648 |
by rmoretti Tue, 2014-11-04 10:35 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
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5,562 |
by rmoretti Mon, 2014-11-03 16:39 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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6,528 |
by rmoretti Mon, 2014-11-03 16:30 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
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1,794 |
by jadolfbr Fri, 2014-10-31 08:55 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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7,256 |
by attesor Fri, 2014-10-31 04:49 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
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2,388 |
by attesor Fri, 2014-10-31 04:23 |
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Rescoring protein docking decoys to get Irms by lj269 » Thu, 2014-10-23 13:23 |
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3,274 |
by rmoretti Wed, 2014-10-29 14:30 |
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Calculating binding affinity by phanvy » Wed, 2014-10-15 23:35 |
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3,739 |
by phanvy Thu, 2014-10-16 18:54 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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1,865 |
by rmoretti Thu, 2014-10-16 10:33 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,358 |
by phanvy Wed, 2014-10-15 21:41 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
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2,064 |
by pachecoj Wed, 2014-10-15 15:12 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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8,613 |
by lanselibai Wed, 2014-10-15 01:41 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
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2,316 |
by pachecoj Thu, 2014-10-09 18:15 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
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4,523 |
by phanvy Wed, 2014-10-08 01:42 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
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10,879 |
by rmoretti Mon, 2014-10-06 16:50 |
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Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
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1,744 |
by yuvals Mon, 2014-10-06 15:02 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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2,375 |
by amelie Tue, 2014-09-30 14:29 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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2,683 |
by rmoretti Mon, 2014-09-29 13:45 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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6,609 |
by rmoretti Wed, 2014-09-24 09:57 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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5,735 |
by lanselibai Mon, 2014-09-22 08:13 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
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2,452 |
by rmoretti Wed, 2014-09-17 10:06 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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1,687 |
by rmoretti Fri, 2014-09-12 09:11 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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3,853 |
by pachecoj Sat, 2014-08-09 06:33 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
2 |
3,239 |
by JuliusSu Fri, 2014-08-08 02:07 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
3 |
5,546 |
by rmoretti Thu, 2014-07-17 09:21 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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2,049 |
by rmoretti Wed, 2014-07-16 08:07 |
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Question about wrong homology design by mony2182 » Fri, 2014-07-04 10:26 |
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1,878 |
by rmoretti Mon, 2014-07-07 08:08 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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2,727 |
by phanvy Wed, 2014-07-02 23:32 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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5,223 |
by rmoretti Tue, 2014-07-01 12:45 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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1,879 |
by rmoretti Tue, 2014-07-01 12:21 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
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1,558 |
by rmoretti Tue, 2014-07-01 12:07 |
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Plexpepdock with Zn by phanvy » Sun, 2014-06-22 22:40 |
1 |
1,599 |
by nawsad Wed, 2014-06-25 13:26 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
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2,363 |
by phanvy Sun, 2014-06-22 23:29 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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4,997 |
by yuvals Sat, 2014-06-21 02:17 |
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Paper about Plexpepdock by phanvy » Wed, 2014-06-18 06:29 |
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1,566 |
by nawsad Fri, 2014-06-20 03:00 |
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Cluster decoys after running PlexPepDock by phanvy » Thu, 2014-06-19 06:03 |
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1,726 |
by nawsad Fri, 2014-06-20 02:48 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
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11,863 |
by phanvy Wed, 2014-06-18 07:50 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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2,097 |
by rmoretti Mon, 2014-06-16 08:23 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
1 |
1,783 |
by rmoretti Tue, 2014-06-10 11:34 |
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question about the exposed strand results in beta_strand_homodimer_design demo by szypanther » Wed, 2014-06-04 00:47 |
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1,775 |
by rmoretti Mon, 2014-06-09 10:05 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
2 |
2,795 |
by rmoretti Tue, 2014-06-03 11:45 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
2,899 |
by szypanther Mon, 2014-05-26 22:03 |
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