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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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363 |
by rmoretti Mon, 2023-02-20 16:07 |
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how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
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3,716 |
by rmoretti Tue, 2014-04-01 08:12 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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2,902 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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8,188 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
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3,659 |
by smlewis Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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2,922 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
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5,077 |
by smlewis Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
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3,801 |
by smlewis Mon, 2014-04-21 06:47 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,353 |
by rmoretti Tue, 2015-07-14 15:27 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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3,327 |
by eunwook Mon, 2014-04-21 06:47 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
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3,606 |
by zlni Mon, 2014-04-21 06:47 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
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14,191 |
by smlewis Mon, 2014-04-21 06:47 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
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3,597 |
by smlewis Wed, 2017-11-08 12:08 |
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how to make benchmark? by albumns » Wed, 2012-04-04 05:23 |
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25,781 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
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1,968 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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2,010 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
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4,648 |
by pholland Mon, 2014-04-21 06:47 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
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2,535 |
by smlewis Mon, 2014-04-21 06:47 |
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How to obtain alignment file for comparative modeling under Rosetta 3.1? by lennylv » Tue, 2010-05-25 01:29 |
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15,677 |
by sabine Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
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5,422 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
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3,722 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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751 |
by Danielsebas Tue, 2019-09-24 05:03 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,353 |
by rmoretti Fri, 2015-07-03 12:58 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
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2,441 |
by smlewis Mon, 2014-04-21 06:47 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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685 |
by lanselibai Wed, 2021-06-23 14:53 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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10,129 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
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2,470 |
by rmoretti Mon, 2017-08-28 09:32 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
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2,610 |
by samuelrpita Thu, 2015-08-06 14:23 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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2,754 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
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12,600 |
by smlewis Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,268 |
by smlewis Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
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2,732 |
by Anatol Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
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3,666 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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8,632 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
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2,134 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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by Zehui Zhou Wed, 2023-02-15 07:12 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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1,144 |
by matteoferla Fri, 2021-08-20 08:37 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
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3,696 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
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1,881 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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4,500 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,187 |
by smlewis Mon, 2014-04-21 06:47 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,217 |
by rmoretti Thu, 2018-02-22 09:29 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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1,849 |
by matteoferla Thu, 2020-05-14 07:01 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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1,610 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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7,060 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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2,172 |
by msardejani Wed, 2016-10-05 10:53 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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3,826 |
by jwillis Sat, 2015-02-07 20:40 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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5,925 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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2,911 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
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3,017 |
by vanita Mon, 2014-04-21 06:47 |
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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2,018 |
by libai2098 Mon, 2014-04-21 06:47 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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3,670 |
by vanita Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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2,803 |
by msun Mon, 2014-04-21 06:47 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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861 |
by BioPython Sun, 2019-05-12 20:07 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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1,919 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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7,993 |
by Lindsay Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
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2,511 |
by aaj Mon, 2016-02-29 04:45 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,238 |
by rmoretti Mon, 2014-04-21 06:47 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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2,760 |
by wangyr Mon, 2014-04-21 06:47 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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2,282 |
by matteoferla Sat, 2020-03-21 09:14 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,567 |
by ylwang Tue, 2020-03-24 19:35 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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2,104 |
by smlewis Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,314 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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4,664 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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687 |
by matteoferla Wed, 2020-07-22 03:08 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,355 |
by jadolfbr Sun, 2020-05-03 19:38 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,008 |
by matteoferla Mon, 2021-03-22 08:29 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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2,946 |
by jadolfbr Thu, 2020-09-24 10:04 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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9,719 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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1,683 |
by smlewis Sun, 2016-01-10 10:02 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,335 |
by rmoretti Mon, 2018-02-12 09:39 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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1,867 |
by smlewis Mon, 2014-04-21 06:47 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,099 |
by smlewis Mon, 2014-04-21 06:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,526 |
by rmoretti Tue, 2014-11-18 10:01 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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940 |
by ela Fri, 2018-08-31 02:53 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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532 |
by vmulligan Thu, 2022-03-03 18:48 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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4,438 |
by banshee Tue, 2016-04-26 00:47 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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1,940 |
by CameronJA Wed, 2022-01-19 20:50 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,343 |
by smlewis Mon, 2014-04-21 06:47 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
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2,263 |
by biofisikx Mon, 2014-04-21 06:47 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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7,863 |
by attesor Fri, 2014-10-31 04:49 |
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Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
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1,758 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
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2,437 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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2,988 |
by ctaylor Mon, 2014-04-21 06:47 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
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5,097 |
by Apiwat Sat, 2014-02-08 01:41 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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6,952 |
by mahajanr Mon, 2014-04-21 06:47 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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194 |
by NingNing Tue, 2022-08-09 17:36 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
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2,333 |
by rmoretti Mon, 2016-03-14 07:58 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
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6,739 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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2,339 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,330 |
by exchhattu Mon, 2014-04-21 06:47 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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809 |
by rmoretti Wed, 2021-06-23 02:17 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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1,690 |
by rmoretti Fri, 2015-07-03 13:51 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,061 |
by smlewis Mon, 2014-04-21 06:47 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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1,210 |
by vmulligan Mon, 2019-04-08 14:49 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
4 |
5,652 |
by kwak Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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2,638 |
by matteoferla Wed, 2019-11-20 02:32 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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1,912 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
3 |
2,017 |
by smlewis Mon, 2018-11-19 13:20 |
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