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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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9,212 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
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2,094 |
by rmoretti Mon, 2017-08-28 09:32 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
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2,305 |
by samuelrpita Thu, 2015-08-06 14:23 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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2,580 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
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11,551 |
by smlewis Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,064 |
by smlewis Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
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2,478 |
by Anatol Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
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3,518 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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7,957 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
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1,982 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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725 |
by matteoferla Fri, 2021-08-20 08:37 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
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3,254 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
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1,730 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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4,156 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,002 |
by smlewis Mon, 2014-04-21 06:47 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,019 |
by rmoretti Thu, 2018-02-22 09:29 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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1,480 |
by matteoferla Thu, 2020-05-14 07:01 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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1,279 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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6,478 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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1,944 |
by msardejani Wed, 2016-10-05 10:53 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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3,471 |
by jwillis Sat, 2015-02-07 20:40 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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5,552 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
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2,729 |
by vanita Mon, 2014-04-21 06:47 |
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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1,868 |
by libai2098 Mon, 2014-04-21 06:47 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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3,419 |
by vanita Mon, 2014-04-21 06:47 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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2,489 |
by msun Mon, 2014-04-21 06:47 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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717 |
by BioPython Sun, 2019-05-12 20:07 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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1,630 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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7,282 |
by Lindsay Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
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2,254 |
by aaj Mon, 2016-02-29 04:45 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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5,888 |
by rmoretti Mon, 2014-04-21 06:47 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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2,567 |
by wangyr Mon, 2014-04-21 06:47 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
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1,924 |
by matteoferla Sat, 2020-03-21 09:14 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,265 |
by ylwang Tue, 2020-03-24 19:35 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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1,938 |
by smlewis Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,130 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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4,264 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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by matteoferla Wed, 2020-07-22 03:08 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,100 |
by jadolfbr Sun, 2020-05-03 19:38 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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by matteoferla Mon, 2021-03-22 08:29 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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2,139 |
by jadolfbr Thu, 2020-09-24 10:04 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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8,948 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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1,479 |
by smlewis Sun, 2016-01-10 10:02 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,123 |
by rmoretti Mon, 2018-02-12 09:39 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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1,698 |
by smlewis Mon, 2014-04-21 06:47 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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3,728 |
by smlewis Mon, 2014-04-21 06:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,144 |
by rmoretti Tue, 2014-11-18 10:01 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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801 |
by ela Fri, 2018-08-31 02:53 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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257 |
by vmulligan Thu, 2022-03-03 18:48 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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3,989 |
by banshee Tue, 2016-04-26 00:47 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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1,561 |
by CameronJA Wed, 2022-01-19 20:50 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,106 |
by smlewis Mon, 2014-04-21 06:47 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
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2,052 |
by biofisikx Mon, 2014-04-21 06:47 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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7,256 |
by attesor Fri, 2014-10-31 04:49 |
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Installing on windows using MinGW by abdullah_ahmed » Wed, 2010-09-15 08:45 |
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1,592 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
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2,208 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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2,686 |
by ctaylor Mon, 2014-04-21 06:47 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,022 |
by smlewis Mon, 2014-04-21 06:47 |
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Interface energy vs binding energy by Apiwat » Wed, 2014-02-05 00:47 |
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4,572 |
by Apiwat Sat, 2014-02-08 01:41 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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6,439 |
by mahajanr Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
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2,077 |
by rmoretti Mon, 2016-03-14 07:58 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
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5,791 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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1,908 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,058 |
by exchhattu Mon, 2014-04-21 06:47 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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540 |
by rmoretti Wed, 2021-06-23 02:17 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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1,511 |
by rmoretti Fri, 2015-07-03 13:51 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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2,804 |
by smlewis Mon, 2014-04-21 06:47 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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1,009 |
by vmulligan Mon, 2019-04-08 14:49 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
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5,219 |
by kwak Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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2,058 |
by matteoferla Wed, 2019-11-20 02:32 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
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1,587 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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1,699 |
by smlewis Mon, 2018-11-19 13:20 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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2,805 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
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4,395 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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3,761 |
by albumns Mon, 2014-04-21 06:47 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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7,656 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Is it possible to do alanine scanning in Rosetta 3.2.1.? by monos_morpheus » Tue, 2011-04-12 02:36 |
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17,575 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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6,698 |
by albumns Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,002 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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1,984 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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5,020 |
by krdav Wed, 2016-08-17 12:57 |
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is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
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1,764 |
by smlewis Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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1,519 |
by rmoretti Fri, 2017-04-21 07:52 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,333 |
by rmoretti Mon, 2014-04-21 06:47 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,061 |
by rmoretti Mon, 2019-07-08 08:05 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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912 |
by rmoretti Wed, 2020-04-01 10:10 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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1,378 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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1,664 |
by rmoretti Wed, 2015-06-17 12:43 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
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863 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,285 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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2,415 |
by rmoretti Wed, 2018-11-21 14:11 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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319 |
by rmoretti Fri, 2022-02-18 11:14 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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2,115 |
by ytao Mon, 2014-04-21 06:47 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
2 |
1,214 |
by ac.research Fri, 2020-02-14 23:33 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,000 |
by SergeyP Sat, 2015-12-19 05:20 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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774 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
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2,668 |
by gw Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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6,724 |
by smlewis Mon, 2014-04-21 06:47 |
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