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Rosetta 3 - General

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
2,488 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
2,487 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
2,485 by rmoretti
Mon, 2016-03-07 14:20
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
2,485 by msun
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
2,475 by Anatol
Mon, 2014-04-21 06:47
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
2,473 by ac.research
Sun, 2017-09-24 11:25
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
2,472 by ela
Thu, 2018-08-09 08:04
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
2,470 by aaxx
Wed, 2019-11-06 01:44
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,467 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
2,465 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,465 by phanvy
Wed, 2014-12-10 00:17
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,452 by rmoretti
Wed, 2014-09-17 10:06
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
2,446 by mintseris
Mon, 2014-04-21 06:47
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,443 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
2,437 by molon
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
2,437 by aminzia
Fri, 2019-07-26 13:14
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
2,436 by dave
Mon, 2014-04-21 06:47
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
2,432 by smlewis
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
2,426 by kalabharath
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
2,418 by ssrb
Tue, 2018-03-06 14:15
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
2,414 by rmoretti
Wed, 2018-11-21 14:11
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
2,412 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
2,409 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,409 by smlewis
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
2,406 by aroop
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
2,404 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
2,403 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,403 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,402 by jrcf
Tue, 2016-05-03 17:40
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
2,400 by rmoretti
Fri, 2018-08-03 11:39
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
2,398 by smiruthi
Mon, 2014-04-21 06:47
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
2,396 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,393 by kaue
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,388 by attesor
Fri, 2014-10-31 04:23
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
2,384 by frits
Mon, 2014-04-21 06:48
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
2,381 by rmoretti
Thu, 2018-06-28 14:09
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
2,378 by pitmand
Tue, 2015-05-26 12:20
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,375 by amelie
Tue, 2014-09-30 14:29
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
2,375 by smlewis
Tue, 2016-12-20 10:40
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
2,374 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
2,371 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
2,365 by Run
Mon, 2014-04-21 06:48
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,363 by phanvy
Sun, 2014-06-22 23:29
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
2,361 by DanielK
Mon, 2014-04-21 06:47
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
2,358 by phanvy
Wed, 2014-10-15 21:41
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
2,355 by lvtun
Mon, 2014-04-21 06:47
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
2,352 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,352 by smlewis
Mon, 2014-04-21 06:47
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,351 by smlewis
Sun, 2017-11-19 20:08
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,347 by jtmacd
Mon, 2014-04-21 06:48
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
2,344 by doranhen
Mon, 2014-04-21 06:47
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
2,344 by justin
Mon, 2014-04-21 06:47
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
2,343 by matteoferla
Tue, 2020-08-11 10:00
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,343 by smlewis
Mon, 2014-04-21 06:47
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
2,341 by westleys
Mon, 2014-04-21 06:47
Normal topic Building Rosetta 3.1 for cs-Rosetta
by zdn3023 » Fri, 2010-02-26 14:31
2
2,341 by zdn3023
Mon, 2014-04-21 06:47
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,340 by lah435
Thu, 2015-02-12 09:16
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
2,331 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
2,327 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
2,318 by smlewis
Mon, 2014-04-21 06:47
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,316 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
2,314 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Weird results from flexpepdock MPI
by gerdos » Fri, 2016-06-24 01:18
3
2,307 by smlewis
Thu, 2016-06-30 08:44
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,305 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,302 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54
2
2,301 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,300 by MRH
Mon, 2014-04-21 06:48
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,297 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,291 by rmoretti
Tue, 2015-08-18 17:11
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,288 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
2,281 by smlewis
Mon, 2018-12-31 08:58
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
2,280 by jarod
Mon, 2014-04-21 06:47
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,279 by Lindsay
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,275 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
2,271 by felipet
Sat, 2016-07-09 09:50
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
2,270 by Apiwat
Thu, 2014-04-17 09:56
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
2,266 by swoody
Mon, 2014-04-21 06:47
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,262 by rmoretti
Thu, 2015-08-06 09:21
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,252 by aaj
Mon, 2016-02-29 04:45
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,249 by zwenthor
Mon, 2014-04-21 06:47
Normal topic which make_fragments.pl
by renedominik » Mon, 2018-06-04 08:58
2
2,249 by renedominik
Sat, 2018-07-07 03:03
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,247 by barak
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
2,245 by smlewis
Fri, 2014-02-28 05:45
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,244 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax - P6G molecule
by allan.ferrari » Wed, 2016-11-30 05:01
3
2,242 by allan.ferrari
Tue, 2017-01-03 05:02
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,241 by jarod
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
2,239 by ctaylor
Mon, 2014-04-21 06:47
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,238 by aaj
Mon, 2016-02-22 07:43
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,228 by berk
Mon, 2014-04-21 06:48
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
2,218 by rmoretti
Mon, 2014-04-21 06:47
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,215 by louisclark
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
2,215 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
2,214 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,213 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,207 by smlewis
Mon, 2014-04-21 06:47
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,205 by SergeyP
Sun, 2015-12-20 01:44
Normal topic how same random seeds can be used in rosetta for mpi run.
by exchhattu » Wed, 2009-10-28 22:09
1
2,205 by smlewis
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,203 by pachecoj
Tue, 2014-11-11 19:30
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,198 by straore
Fri, 2015-04-17 01:54
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