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Rosetta 3 - General
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
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3,267 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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3,267 |
by smlewis Tue, 2014-12-23 13:58 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
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3,260 |
by zhisheng Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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3,256 |
by smlewis Mon, 2014-04-21 06:47 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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3,250 |
by asbelx Thu, 2018-04-26 00:23 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
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3,250 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
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3,247 |
by smlewis Mon, 2014-04-21 06:47 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
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3,244 |
by eminegenetics Fri, 2018-09-21 07:42 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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3,244 |
by smlewis Mon, 2014-04-21 06:47 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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3,237 |
by smlewis Tue, 2016-12-20 10:40 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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3,236 |
by smlewis Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
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3,229 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
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3,228 |
by pledor Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
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3,215 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
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3,214 |
by SergeyP Mon, 2018-11-12 09:19 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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3,213 |
by jadolfbr Wed, 2019-06-12 20:17 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
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3,206 |
by rmoretti Fri, 2015-07-03 13:24 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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3,201 |
by Trentage Mon, 2014-04-21 06:47 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
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3,200 |
by doranhen Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
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3,179 |
by smlewis Thu, 2016-06-30 08:44 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
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3,170 |
by rmoretti Tue, 2017-04-18 13:49 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
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3,167 |
by khanhbinh Mon, 2014-04-21 06:47 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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3,164 |
by petrikigor Mon, 2014-04-21 06:47 |
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
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3,157 |
by aminzia Fri, 2019-07-26 13:14 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
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3,153 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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3,150 |
by einew Mon, 2014-04-21 06:47 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
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3,145 |
by frits Mon, 2014-04-21 06:48 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
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3,144 |
by pitmand Tue, 2015-05-26 12:20 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
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3,138 |
by lvtun Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
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3,131 |
by alejandro Mon, 2014-04-21 06:47 |
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relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
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3,126 |
by allan.ferrari Tue, 2017-01-03 05:02 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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3,118 |
by rmoretti Mon, 2014-04-21 06:48 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
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3,117 |
by smlewis Mon, 2014-04-21 06:47 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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3,114 |
by wangyr Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
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3,113 |
by Anatol Mon, 2014-04-21 06:47 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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3,112 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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3,112 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems compiling tests by molon » Wed, 2009-09-30 07:33 |
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3,112 |
by molon Mon, 2014-04-21 06:47 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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3,111 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
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3,099 |
by exchhattu Mon, 2014-04-21 06:47 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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3,093 |
by rmoretti Fri, 2020-11-06 08:04 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
3,089 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abinitio Structure Prediction - Sanity Test by westleys » Tue, 2010-06-01 00:28 |
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3,088 |
by westleys Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
4 |
3,085 |
by maruhuang Thu, 2019-09-26 18:55 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
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3,082 |
by kalabharath Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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3,081 |
by phanvy Wed, 2014-10-15 21:41 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
1 |
3,079 |
by smlewis Mon, 2014-04-21 06:47 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
3,079 |
by felipet Sat, 2016-07-09 09:50 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
3,072 |
by dave Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
2 |
3,069 |
by burkheadlab Mon, 2014-04-21 06:47 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
2 |
3,067 |
by Lindsay Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
3,066 |
by jadolfbr Mon, 2014-04-21 06:47 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
2 |
3,057 |
by attesor Fri, 2014-10-31 04:23 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
3,055 |
by Run Mon, 2014-04-21 06:48 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
3,055 |
by Anonymous Mon, 2014-04-21 06:47 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
3,053 |
by jtmacd Mon, 2014-04-21 06:48 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
3,052 |
by MRH Mon, 2014-04-21 06:48 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
3,050 |
by pachecoj Thu, 2014-10-09 18:15 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
2 |
3,048 |
by samuelrpita Thu, 2015-08-06 14:23 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
3,042 |
by smlewis Mon, 2014-04-21 06:47 |
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Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
3,040 |
by zdn3023 Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
1 |
3,038 |
by smlewis Fri, 2014-02-28 05:45 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
1 |
3,035 |
by rmoretti Wed, 2014-09-17 10:06 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
3,032 |
by phanvy Sun, 2014-06-22 23:29 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
2 |
3,027 |
by mintseris Mon, 2014-04-21 06:47 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
3,018 |
by Lindsay Mon, 2014-04-21 06:47 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
2 |
3,015 |
by aroop Mon, 2014-04-21 06:47 |
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Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
3,015 |
by doranhen Mon, 2014-04-21 06:47 |
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metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
2 |
3,013 |
by lah435 Thu, 2015-02-12 09:16 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
1 |
3,012 |
by rmoretti Mon, 2017-08-28 09:32 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
3,009 |
by matteoferla Mon, 2019-12-23 07:24 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
3,006 |
by Kazu Mon, 2020-05-18 10:52 |
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Rosetta Dock by swoody » Tue, 2009-11-10 16:20 |
1 |
3,006 |
by smlewis Mon, 2014-04-21 06:47 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
3,005 |
by rmoretti Thu, 2015-08-06 09:21 |
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Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
3,000 |
by jhbrown Mon, 2014-04-21 06:47 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,998 |
by smlewis Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
2 |
2,998 |
by aaj Mon, 2016-02-29 04:45 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
4 |
2,996 |
by matteoferla Sat, 2020-03-21 09:14 |
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
3 |
2,991 |
by rmoretti Tue, 2021-02-09 09:22 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,980 |
by DanielK Mon, 2014-04-21 06:47 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,979 |
by ctaylor Mon, 2014-04-21 06:47 |
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Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
2 |
2,975 |
by rmoretti Tue, 2015-08-18 17:11 |
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Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
1 |
2,974 |
by reddybg Mon, 2014-04-21 06:47 |
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,956 |
by Apiwat Thu, 2014-04-17 09:56 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
2,953 |
by matteoferla Thu, 2018-10-04 01:30 |
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Cluster Error by justin » Mon, 2010-04-26 00:06 |
2 |
2,948 |
by justin Mon, 2014-04-21 06:47 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
2 |
2,947 |
by smlewis Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
2,945 |
by decrSTL Tue, 2019-08-27 10:24 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
1 |
2,943 |
by IAndre Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
2 |
2,942 |
by smiruthi Mon, 2014-04-21 06:47 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,936 |
by renedominik Mon, 2018-06-04 00:04 |
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FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,932 |
by swoody Mon, 2014-04-21 06:47 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
2 |
2,930 |
by jarod Mon, 2014-04-21 06:47 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,929 |
by smlewis Mon, 2014-04-21 06:47 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
4 |
2,925 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
2 |
2,923 |
by zwenthor Mon, 2014-04-21 06:47 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
2 |
2,922 |
by rmoretti Mon, 2014-04-21 06:47 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,916 |
by SergeyP Sun, 2015-12-20 01:44 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,915 |
by aaj Mon, 2016-02-22 07:43 |
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