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Rosetta 3 - General

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Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
3,337 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,066 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
2,702 by jrcf
Fri, 2016-02-12 16:41
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
3,241 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,169 by frichter
Mon, 2014-04-21 06:47
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,364 by phanvy
Sun, 2014-06-22 23:29
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,292 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
3,224 by abiadak
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,200 by straore
Fri, 2015-04-17 01:54
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,404 by jhbrown
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,060 by aaj
Mon, 2016-02-22 07:50
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,405 by jrcf
Tue, 2016-05-03 17:40
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
3,271 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
2,999 by jrcf
Fri, 2015-10-16 10:57
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
287 by guowuchen
Wed, 2022-03-30 04:20
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
2,668 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
1,237 by matteoferla
Wed, 2019-08-21 11:58
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,132 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
4,572 by Apiwat
Sat, 2014-02-08 01:41
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,682 by vsjasion
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,087 by jarek
Mon, 2014-04-21 06:48
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,090 by road runner
Tue, 2015-12-01 10:08
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,252 by zwenthor
Mon, 2014-04-21 06:47
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,668 by gw
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
2,478 by Anatol
Mon, 2014-04-21 06:47
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
1,989 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
2,950 by inder
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,474 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,439 by rmoretti
Wed, 2015-01-21 10:05
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
1,604 by MA
Thu, 2017-04-27 18:53
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
1,865 by aloshbau
Mon, 2015-12-14 23:30
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,148 by jalan
Thu, 2020-04-23 05:19
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
720 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
95 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,265 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
3,066 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
1,664 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
2,343 by westleys
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,017 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,515 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,243 by jarod
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
2,525 by alejandro
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,549 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,865 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Rosetta Double changing mmCIF chain ID
by Victor Tobiasson » Thu, 2021-05-13 07:57
2
736 by Victor Tobiasson
Thu, 2021-05-13 08:33
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10
2
4,826 by kbuhr
Tue, 2015-07-14 04:30
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,303 by MRH
Mon, 2014-04-21 06:48
Normal topic Working through tutorials: expected output scorces differ from calculated results
by j.schmue » Sat, 2020-01-18 13:16
2
1,098 by j.schmue
Tue, 2020-01-28 13:31
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,199 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
2,273 by Apiwat
Thu, 2014-04-17 09:56
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
2,684 by Awagner7
Tue, 2020-04-28 10:51
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
2,527 by ndousis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
2,192 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,468 by phanvy
Wed, 2014-12-10 00:17
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,077 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Data Check for a newb
by ac.research » Sun, 2017-03-12 23:42
2
1,738 by ac.research
Fri, 2017-03-31 07:36
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
2,243 by ctaylor
Mon, 2014-04-21 06:47
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,220 by louisclark
Mon, 2014-04-21 06:47
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
2,372 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,240 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
3,158 by rmoretti
Tue, 2016-07-12 08:18
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
2,711 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
2,407 by aroop
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,134 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaCM: "Ligands must be added to all templates"
by lanselibai » Tue, 2021-06-22 10:42
2
555 by lanselibai
Wed, 2021-06-23 13:21
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
2,447 by mintseris
Mon, 2014-04-21 06:47
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
2,411 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Using a broker file with relax
by Al52 » Mon, 2015-11-30 20:24
2
1,948 by Al52
Tue, 2015-12-01 18:22
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
2
162 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,389 by attesor
Fri, 2014-10-31 04:23
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,166 by qlj
Thu, 2014-03-06 22:20
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,342 by lah435
Thu, 2015-02-12 09:16
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
2,597 by jklett
Mon, 2014-04-21 06:47
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
2,346 by doranhen
Mon, 2014-04-21 06:47
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,349 by jtmacd
Mon, 2014-04-21 06:48
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
2,406 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,486 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
3,412 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
2,697 by zhisheng
Mon, 2014-04-21 06:47
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,254 by aaj
Mon, 2016-02-29 04:45
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,058 by exchhattu
Mon, 2014-04-21 06:47
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
215 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic Where to find old version of Rosetta with git version number
by mao_x » Wed, 2019-08-07 01:22
2
1,563 by mao_x
Thu, 2019-08-08 01:37
Normal topic analyzing the protein protein docking without native structure
by rohi » Sun, 2020-10-11 20:42
2
997 by rohi
Tue, 2020-10-13 09:15
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
3,360 by Victor
Fri, 2014-01-31 10:41
Normal topic backbone-independent density
by SergeyP » Sun, 2016-03-20 04:57
2
1,957 by SergeyP
Thu, 2016-05-05 02:07
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04
2
561 by matteoferla
Thu, 2021-10-07 09:31
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
2,489 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,780 by ytao
Mon, 2014-04-21 06:48
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
2,798 by rmoretti
Tue, 2014-06-03 11:45
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42
2
3,040 by attesor
Thu, 2015-10-22 03:42
Normal topic Histidine phosphorylation by a patch
by felipet » Sat, 2016-07-09 06:51
2
2,273 by felipet
Sat, 2016-07-09 09:50
Normal topic Why I_sc of Rosetta 2016.02 and 2018.21 are so different?
by eminegenetics » Mon, 2018-07-16 12:51
2
1,701 by eminegenetics
Wed, 2018-07-18 13:48
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
2,922 by rmoretti
Mon, 2014-04-21 06:47
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,138 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,085 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,127 by rmoretti
Fri, 2015-01-09 10:59
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
803 by sgaray
Fri, 2021-06-25 11:26
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