You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Get nchi for heavy atoms by pachecoj » Tue, 2014-11-04 19:04 |
1 |
2,058 |
by rmoretti Tue, 2014-11-11 13:22 |
|
|
minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
13 |
15,584 |
by rmoretti Tue, 2014-11-11 13:56 |
|
|
Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
2 |
2,730 |
by pachecoj Tue, 2014-11-11 19:30 |
|
|
Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
0 |
1,465 |
by lanselibai Sun, 2014-11-16 10:44 |
|
|
ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
5 |
4,998 |
by rmoretti Tue, 2014-11-18 10:01 |
|
|
latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
10 |
10,265 |
by jadolfbr Wed, 2014-11-26 11:40 |
|
|
What is "residue packing", "repacking", and so on? by cossio » Wed, 2014-12-03 08:49 |
2 |
3,494 |
by cossio Wed, 2014-12-03 14:51 |
|
|
How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
1 |
3,388 |
by rmoretti Wed, 2014-12-03 18:52 |
|
|
What is the total_score that relax outputs? by cossio » Tue, 2014-12-02 13:50 |
4 |
4,801 |
by cossio Thu, 2014-12-04 05:41 |
|
|
Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
2 |
3,075 |
by phanvy Wed, 2014-12-10 00:17 |
|
|
How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
6,083 |
by lanselibai Fri, 2014-12-12 10:27 |
|
|
ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
1 |
2,227 |
by rmoretti Mon, 2014-12-15 02:37 |
|
|
abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
0 |
1,486 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
|
|
Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
4 |
5,797 |
by bharat_46010 Mon, 2014-12-15 20:51 |
|
|
Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
4,517 |
by lanselibai Tue, 2014-12-16 10:48 |
|
|
A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
7 |
6,976 |
by masterofpuppets Fri, 2014-12-19 08:30 |
|
|
Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
1 |
3,096 |
by smlewis Tue, 2014-12-23 13:58 |
|
|
How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
4 |
4,364 |
by zaldini Fri, 2015-01-02 05:38 |
|
|
Fragment files by exchhattu » Fri, 2009-09-18 01:04 |
4 |
4,479 |
by rmoretti Tue, 2015-01-06 09:58 |
|
|
How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
4 |
4,381 |
by zaldini Wed, 2015-01-07 20:35 |
|
|
Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
2 |
2,620 |
by rmoretti Fri, 2015-01-09 10:59 |
|
|
Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
7 |
8,117 |
by rmoretti Wed, 2015-01-21 08:43 |
|
|
Good baseline settings for side chain packing by pachecoj » Tue, 2015-01-13 19:25 |
2 |
4,074 |
by rmoretti Wed, 2015-01-21 10:05 |
|
|
force field, energy function by masterofpuppets » Wed, 2015-01-21 11:06 |
3 |
5,806 |
by masterofpuppets Tue, 2015-01-27 07:07 |
|
|
Can anyone become a Rosetta developer? by cossio » Thu, 2015-01-22 05:10 |
4 |
5,789 |
by cossio Thu, 2015-01-29 11:50 |
|
|
How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
4 |
4,234 |
by jwillis Sat, 2015-02-07 20:40 |
|
|
Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
3 |
10,048 |
by rmoretti Mon, 2015-02-09 09:09 |
|
|
why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
3 |
4,229 |
by rmoretti Mon, 2015-02-09 11:21 |
|
|
AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
11 |
12,113 |
by masterofpuppets Tue, 2015-02-10 01:33 |
|
|
Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
5 |
6,133 |
by masterofpuppets Tue, 2015-02-10 03:15 |
|
|
disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
10 |
12,651 |
by lanselibai Tue, 2015-02-10 14:03 |
|
|
metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
2 |
2,861 |
by lah435 Thu, 2015-02-12 09:16 |
|
|
ligand flexibility by dave » Thu, 2015-02-12 08:48 |
1 |
2,101 |
by rmoretti Wed, 2015-02-18 09:17 |
|
|
How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
1 |
2,026 |
by rmoretti Wed, 2015-02-18 09:19 |
|
|
about constraints by jiongzhang » Wed, 2011-02-23 15:59 |
21 |
23,383 |
by rmoretti Wed, 2015-02-18 09:23 |
|
|
score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
1 |
2,323 |
by jadolfbr Fri, 2015-02-27 11:08 |
|
|
Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
4 |
4,714 |
by rmoretti Mon, 2015-03-30 14:43 |
|
|
Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
1 |
1,985 |
by rmoretti Mon, 2015-03-30 16:38 |
|
|
ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
3 |
4,049 |
by rmoretti Mon, 2015-03-30 16:58 |
|
|
scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
1 |
2,322 |
by rmoretti Thu, 2015-04-02 12:52 |
|
|
Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
6,066 |
by rmoretti Thu, 2015-04-16 10:09 |
|
|
B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,722 |
by straore Fri, 2015-04-17 01:54 |
|
|
Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
12 |
11,786 |
by rmoretti Fri, 2015-04-24 12:15 |
|
|
Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
5 |
5,451 |
by rmoretti Sat, 2015-04-25 10:05 |
|
|
Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
1 |
1,941 |
by rmoretti Thu, 2015-04-30 07:13 |
|
|
Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
3 |
3,668 |
by rmoretti Thu, 2015-04-30 16:09 |
|
|
Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
9 |
10,768 |
by rmoretti Thu, 2015-04-30 16:25 |
|
|
Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
5 |
5,198 |
by rmoretti Tue, 2015-05-05 14:31 |
|
|
sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
3 |
3,259 |
by rmoretti Mon, 2015-05-25 11:00 |
|
|
Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
1 |
2,142 |
by rmoretti Mon, 2015-05-25 11:07 |
|
|
How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
2 |
2,952 |
by pitmand Tue, 2015-05-26 12:20 |
|
|
Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
9 |
8,591 |
by rmoretti Mon, 2015-06-01 15:27 |
|
|
Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
1 |
2,048 |
by rmoretti Wed, 2015-06-17 12:43 |
|
|
Clustering Rosetta output PDB files by ritacc18 » Sat, 2014-01-11 20:13 |
2 |
5,534 |
by jwillis Sat, 2015-06-27 21:11 |
|
|
How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
1 |
2,633 |
by rmoretti Fri, 2015-07-03 12:58 |
|
|
nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
1 |
2,294 |
by rmoretti Fri, 2015-07-03 13:04 |
|
|
the output of ligand docking by phanvy » Fri, 2015-07-03 01:27 |
1 |
1,986 |
by rmoretti Fri, 2015-07-03 13:14 |
|
|
RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
1 |
3,058 |
by rmoretti Fri, 2015-07-03 13:24 |
|
|
protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 |
51 |
57,682 |
by rmoretti Fri, 2015-07-03 13:29 |
|
|
Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
1 |
1,902 |
by rmoretti Fri, 2015-07-03 13:51 |
|
|
modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
5 |
7,527 |
by rmoretti Fri, 2015-07-03 14:02 |
|
|
Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
2 |
2,591 |
by MarkW Fri, 2015-07-03 15:36 |
|
|
When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
3 |
3,379 |
by rmoretti Sun, 2015-07-05 14:28 |
|
|
Connecting 2 Domains Via Non-Flexible Linker by jurkm » Mon, 2011-09-05 06:10 |
2 |
5,594 |
by kbuhr Tue, 2015-07-14 04:30 |
|
|
How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
1 |
2,598 |
by rmoretti Tue, 2015-07-14 15:27 |
|
|
Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,833 |
by rmoretti Thu, 2015-08-06 09:21 |
|
|
loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
1 |
1,893 |
by rmoretti Thu, 2015-08-06 09:28 |
|
|
How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
2 |
2,896 |
by samuelrpita Thu, 2015-08-06 14:23 |
|
|
Segmentation fault by Hongtham » Mon, 2014-12-15 20:21 |
3 |
4,873 |
by Sandy Fri, 2015-08-07 15:49 |
|
|
Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
4,628 |
by rmoretti Wed, 2015-08-12 15:03 |
|
|
Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
2 |
2,810 |
by rmoretti Tue, 2015-08-18 17:11 |
|
|
How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
1 |
2,099 |
by rmoretti Wed, 2015-09-02 12:48 |
|
|
Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
1 |
15,438 |
by rmoretti Sat, 2015-09-05 12:10 |
|
|
Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
2 |
4,195 |
by rmoretti Tue, 2015-09-08 10:18 |
|
|
Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
3 |
3,387 |
by rmoretti Thu, 2015-09-17 12:42 |
|
|
RNA add/modify residues by galvaner » Fri, 2015-09-18 05:49 |
1 |
1,887 |
by rmoretti Sat, 2015-09-19 13:20 |
|
|
UBQ chemically conjugated docking error by cheyuk » Fri, 2015-09-18 06:57 |
4 |
4,418 |
by cheyuk Sun, 2015-09-20 02:08 |
|
|
Talaris scoring function by Lindsay » Sun, 2014-08-24 18:16 |
2 |
6,172 |
by AndrewLeaver-Fay Sun, 2015-09-20 19:34 |
|
|
Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,703 |
by allan.ferrari Mon, 2015-09-21 21:54 |
|
|
About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
5 |
6,382 |
by ssrb Tue, 2015-09-22 08:35 |
|
|
Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
2 |
2,598 |
by gerdos Fri, 2015-10-16 03:01 |
|
|
The following options have been set but have not yet been used by jrcf » Fri, 2015-10-09 10:48 |
2 |
3,647 |
by jrcf Fri, 2015-10-16 10:57 |
|
|
AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
2 |
3,663 |
by attesor Thu, 2015-10-22 03:42 |
|
|
unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
1 |
1,900 |
by rmoretti Tue, 2015-10-27 08:46 |
|
|
Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
7 |
7,564 |
by rmoretti Tue, 2015-10-27 09:11 |
|
|
what is the xxx.static.linuxgccrelease? by syoifczeri » Sat, 2015-10-31 04:09 |
2 |
5,812 |
by syoifczeri Mon, 2015-11-02 03:59 |
|
|
What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
1 |
5,728 |
by rmoretti Tue, 2015-11-10 11:52 |
|
|
RASREC full_run vs. test_run by Lati » Wed, 2015-10-28 03:26 |
1 |
2,033 |
by Lati Fri, 2015-11-20 03:32 |
|
|
Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
2 |
2,643 |
by road runner Tue, 2015-12-01 10:08 |
|
|
Using a broker file with relax by Al52 » Mon, 2015-11-30 20:24 |
2 |
2,520 |
by Al52 Tue, 2015-12-01 18:22 |
|
|
rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
1 |
3,198 |
by rmoretti Thu, 2015-12-03 15:14 |
|
|
Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,369 |
by aloshbau Mon, 2015-12-14 23:30 |
|
|
calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
3 |
3,701 |
by rmoretti Wed, 2015-12-16 11:22 |
|
|
loop model error by albumns » Sun, 2011-04-03 00:26 |
21 |
19,085 |
by rmoretti Fri, 2015-12-18 14:26 |
|
|
Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,115 |
by rosend Fri, 2015-12-18 19:39 |
|
|
Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
2,498 |
by SergeyP Sat, 2015-12-19 05:20 |
|
|
rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,772 |
by SergeyP Sun, 2015-12-20 01:44 |
|
|
Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
1 |
1,899 |
by smlewis Tue, 2015-12-22 08:31 |
|
|
I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
1 |
1,898 |
by smlewis Sun, 2016-01-10 10:02 |
|
|
RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,726 |
by Lati Tue, 2016-01-12 13:28 |
Log in to post new content in the forum.
