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Rosetta 3 - General

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Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
2,899 by szypanther
Mon, 2014-05-26 22:03
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,386 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,326 by rmoretti
Sat, 2014-05-17 14:10
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
15,171 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
1,734 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,574 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
4,645 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
2,365 by Run
Mon, 2014-04-21 06:48
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,296 by vasek
Mon, 2014-04-21 06:48
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,258 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta nonlocal application
by mintseris » Tue, 2013-12-31 13:13
1
1,797 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,567 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
4,033 by rmoretti
Mon, 2014-04-21 06:48
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
4,663 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,060 by rmoretti
Mon, 2014-04-21 06:48
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,720 by Lindsay
Mon, 2014-04-21 06:48
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
3,599 by rmoretti
Mon, 2014-04-21 06:48
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,590 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Handling peptide with noncanonical aminoacids
by tigerous » Sat, 2013-12-28 17:16
1
2,969 by rmoretti
Mon, 2014-04-21 06:48
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
6,031 by rmoretti
Mon, 2014-04-21 06:48
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,515 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,545 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
2,715 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
10,249 by Lindsay
Mon, 2014-04-21 06:48
Normal topic force hydrogen rebuild on input
by jtmacd » Mon, 2013-11-18 08:28
2
2,347 by jtmacd
Mon, 2014-04-21 06:48
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
5,414 by rmoretti
Mon, 2014-04-21 06:48
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
8,473 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,446 by rmoretti
Mon, 2014-04-21 06:48
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,688 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
8,187 by rmoretti
Mon, 2014-04-21 06:48
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
13,421 by rmoretti
Mon, 2014-04-21 06:48
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
4,724 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,513 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
4,613 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21
2
3,115 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
4,182 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
2,751 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,660 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38
3
2,877 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
5,395 by smlewis
Mon, 2014-04-21 06:48
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,319 by MRH
Mon, 2014-04-21 06:48
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
4,522 by rmoretti
Mon, 2014-04-21 06:48
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
2,670 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,084 by jarek
Mon, 2014-04-21 06:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,300 by MRH
Mon, 2014-04-21 06:48
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
2,971 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06
1
3,181 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
4,382 by rosa
Mon, 2014-04-21 06:48
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
2,412 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
5,262 by rosa
Mon, 2014-04-21 06:48
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,707 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
2,961 by frits
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
5,920 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,427 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,132 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19
1
1,548 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,779 by ytao
Mon, 2014-04-21 06:48
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,515 by smlewis
Mon, 2014-04-21 06:48
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
2,384 by frits
Mon, 2014-04-21 06:48
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,144 by banshee
Mon, 2014-04-21 06:48
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55
26
23,101 by omirus
Mon, 2014-04-21 06:48
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,228 by berk
Mon, 2014-04-21 06:48
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,476 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04
1
1,762 by smlewis
Mon, 2014-04-21 06:48
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32
6
4,702 by fukamitka
Mon, 2014-04-21 06:48
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
2,571 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
4,701 by MRH
Mon, 2014-04-21 06:48
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
7,574 by rmoretti
Mon, 2014-04-21 06:48
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
13,496 by pledor
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
7,263 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,652 by smlewis
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
12,024 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07
3
2,913 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
2,396 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
12,672 by nawsad
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
1,918 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
4,341 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
4,084 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22
1
1,537 by rmoretti
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
6,277 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
3,003 by eunwook
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
9,788 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,343 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
7,970 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,998 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39
1
1,781 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
6,722 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47
3
3,041 by tsjain
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
4,264 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
3,698 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,113 by ytao
Mon, 2014-04-21 06:47
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22
3
2,802 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
9,446 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
3,460 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
13,625 by smlewis
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,177 by qlj
Mon, 2014-04-21 06:47
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47
55
43,982 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,640 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
5,905 by ritacc18
Mon, 2014-04-21 06:47
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