You are here

Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,069 by rmoretti
Mon, 2015-05-25 11:07
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,146 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
5,021 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
10,453 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
3,570 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
1,871 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
5,270 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
11,454 by rmoretti
Fri, 2015-04-24 12:15
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,634 by straore
Fri, 2015-04-17 01:54
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
5,905 by rmoretti
Thu, 2015-04-16 10:09
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,256 by rmoretti
Thu, 2015-04-02 12:52
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,935 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02
1
1,915 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
4,570 by rmoretti
Mon, 2015-03-30 14:43
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,260 by jadolfbr
Fri, 2015-02-27 11:08
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59
21
22,817 by rmoretti
Wed, 2015-02-18 09:23
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,942 by rmoretti
Wed, 2015-02-18 09:19
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
2,033 by rmoretti
Wed, 2015-02-18 09:17
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,763 by lah435
Thu, 2015-02-12 09:16
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
12,379 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
5,975 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
11,822 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
4,106 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
9,783 by rmoretti
Mon, 2015-02-09 09:09
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
4,112 by jwillis
Sat, 2015-02-07 20:40
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10
4
5,672 by cossio
Thu, 2015-01-29 11:50
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06
3
5,642 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,951 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
7,890 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,542 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
4,248 by zaldini
Wed, 2015-01-07 20:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
4,360 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
4,227 by zaldini
Fri, 2015-01-02 05:38
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
3,014 by smlewis
Tue, 2014-12-23 13:58
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
6,780 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
4,379 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
5,621 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,445 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,154 by rmoretti
Mon, 2014-12-15 02:37
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16
4
5,909 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,971 by phanvy
Wed, 2014-12-10 00:17
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
4,669 by cossio
Thu, 2014-12-04 05:41
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33
1
3,319 by rmoretti
Wed, 2014-12-03 18:52
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49
2
3,379 by cossio
Wed, 2014-12-03 14:51
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
9,973 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
4,861 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,414 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,645 by pachecoj
Tue, 2014-11-11 19:30
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
15,130 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04
1
1,993 by rmoretti
Tue, 2014-11-11 13:22
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37
1
2,263 by smlewis
Fri, 2014-11-07 12:03
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10
1
1,967 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
6,171 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
7,714 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26
1
2,170 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
8,442 by attesor
Fri, 2014-10-31 04:49
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,834 by attesor
Fri, 2014-10-31 04:23
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
3,875 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
4,331 by phanvy
Thu, 2014-10-16 18:54
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13
1
2,217 by rmoretti
Thu, 2014-10-16 10:33
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28
2
2,811 by phanvy
Wed, 2014-10-15 21:41
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,508 by pachecoj
Wed, 2014-10-15 15:12
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
9,978 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42
2
2,795 by pachecoj
Thu, 2014-10-09 18:15
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
5,292 by phanvy
Wed, 2014-10-08 01:42
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
12,604 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
2,054 by yuvals
Mon, 2014-10-06 15:02
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,720 by amelie
Tue, 2014-09-30 14:29
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
3,224 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
7,886 by rmoretti
Wed, 2014-09-24 09:57
Normal topic What is a "silent file"?
by lanselibai » Mon, 2014-09-22 02:43
2
6,641 by lanselibai
Mon, 2014-09-22 08:13
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,826 by rmoretti
Wed, 2014-09-17 10:06
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,990 by rmoretti
Fri, 2014-09-12 09:11
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
4,598 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Adding noncanonical amino acid (PCA) to Rosetta 3
by JuliusSu » Fri, 2014-08-01 11:23
2
3,745 by JuliusSu
Fri, 2014-08-08 02:07
Normal topic Constraints and final scoring of satisfied constraints in ab initio
by Azadeh » Tue, 2014-07-15 01:29
3
6,141 by rmoretti
Thu, 2014-07-17 09:21
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,410 by rmoretti
Wed, 2014-07-16 08:07
Normal topic Question about wrong homology design
by mony2182 » Fri, 2014-07-04 10:26
1
2,198 by rmoretti
Mon, 2014-07-07 08:08
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
3,281 by phanvy
Wed, 2014-07-02 23:32
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
5,903 by rmoretti
Tue, 2014-07-01 12:45
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
2,206 by rmoretti
Tue, 2014-07-01 12:21
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,862 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Plexpepdock with Zn
by phanvy » Sun, 2014-06-22 22:40
1
1,903 by nawsad
Wed, 2014-06-25 13:26
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,788 by phanvy
Sun, 2014-06-22 23:29
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,388 by yuvals
Sat, 2014-06-21 02:17
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,863 by nawsad
Fri, 2014-06-20 03:00
Normal topic Cluster decoys after running PlexPepDock
by phanvy » Thu, 2014-06-19 06:03
1
2,038 by nawsad
Fri, 2014-06-20 02:48
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
13,731 by phanvy
Wed, 2014-06-18 07:50
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,449 by rmoretti
Mon, 2014-06-16 08:23
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
2,094 by rmoretti
Tue, 2014-06-10 11:34
Normal topic question about the exposed strand results in beta_strand_homodimer_design demo
by szypanther » Wed, 2014-06-04 00:47
1
2,099 by rmoretti
Mon, 2014-06-09 10:05
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
3,261 by rmoretti
Tue, 2014-06-03 11:45
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
3,349 by szypanther
Mon, 2014-05-26 22:03
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,797 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
5,110 by rmoretti
Sat, 2014-05-17 14:10
Hot topic Submit job in parallel : MPI and jd2 ?
by anusmita_sahoo » Wed, 2010-03-31 00:18
18
17,600 by jadolfbr
Wed, 2014-05-14 08:51
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
2,052 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
4,168 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
5,443 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
2,821 by Run
Mon, 2014-04-21 06:48
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General