You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
2,899 |
by szypanther Mon, 2014-05-26 22:03 |
|
|
Energy minimization of a crystal structure with residues mutated in pymol by bharat_46010 » Wed, 2014-05-21 19:52 |
1 |
3,386 |
by rmoretti Fri, 2014-05-23 08:09 |
|
|
Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
5 |
4,326 |
by rmoretti Sat, 2014-05-17 14:10 |
|
|
Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
18 |
15,171 |
by jadolfbr Wed, 2014-05-14 08:51 |
|
|
Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
1 |
1,734 |
by rmoretti Mon, 2014-05-12 07:50 |
|
|
Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
3 |
3,574 |
by jadolfbr Mon, 2014-04-21 21:05 |
|
|
protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
4,645 |
by jadolfbr Mon, 2014-04-21 07:30 |
|
|
Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
2,365 |
by Run Mon, 2014-04-21 06:48 |
|
|
Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,296 |
by vasek Mon, 2014-04-21 06:48 |
|
|
Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
3 |
3,258 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
rosetta nonlocal application by mintseris » Tue, 2013-12-31 13:13 |
1 |
1,797 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
3 |
3,567 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
4,033 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
4,663 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
1 |
2,060 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
sign of ddG of mutation by Lindsay » Wed, 2013-11-27 00:25 |
2 |
3,720 |
by Lindsay Mon, 2014-04-21 06:48 |
|
|
fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
3,599 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
1 |
2,590 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Handling peptide with noncanonical aminoacids by tigerous » Sat, 2013-12-28 17:16 |
1 |
2,969 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
6,031 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
2 |
2,515 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
2,545 |
by Sergey Menis Mon, 2014-04-21 06:48 |
|
|
get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
2,715 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
11 |
10,249 |
by Lindsay Mon, 2014-04-21 06:48 |
|
|
force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
2,347 |
by jtmacd Mon, 2014-04-21 06:48 |
|
|
P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
5,414 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
8,473 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
1 |
3,446 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
1 |
1,688 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
7 |
8,187 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
8 |
13,421 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
4,724 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,513 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
4,613 |
by Lindsay Mon, 2014-04-21 06:48 |
|
|
Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,115 |
by Robert Evans Mon, 2014-04-21 06:48 |
|
|
Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
4,182 |
by Ashafix Mon, 2014-04-21 06:48 |
|
|
Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
2,751 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
1 |
1,660 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
2,877 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
5,395 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
3,319 |
by MRH Mon, 2014-04-21 06:48 |
|
|
How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
4,522 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
2,670 |
by PaulaBanks Mon, 2014-04-21 06:48 |
|
|
mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,084 |
by jarek Mon, 2014-04-21 06:48 |
|
|
minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,300 |
by MRH Mon, 2014-04-21 06:48 |
|
|
Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
2,971 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
3,181 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
4,382 |
by rosa Mon, 2014-04-21 06:48 |
|
|
Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
2,412 |
by erin_cutts Mon, 2014-04-21 06:48 |
|
|
best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
5,262 |
by rosa Mon, 2014-04-21 06:48 |
|
|
opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
1,707 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
2,961 |
by frits Mon, 2014-04-21 06:48 |
|
|
RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
5,920 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
3,427 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,132 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
replace a short helix by berk » Wed, 2013-06-05 10:19 |
1 |
1,548 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
2,779 |
by ytao Mon, 2014-04-21 06:48 |
|
|
missing amino acid by berk » Fri, 2013-06-14 06:07 |
1 |
1,515 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
2,384 |
by frits Mon, 2014-04-21 06:48 |
|
|
loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,144 |
by banshee Mon, 2014-04-21 06:48 |
|
|
problems with terminal caps by omirus » Tue, 2013-06-25 08:55 |
26 |
23,101 |
by omirus Mon, 2014-04-21 06:48 |
|
|
Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,228 |
by berk Mon, 2014-04-21 06:48 |
|
|
score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
3,476 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Helix at loop site by berk » Fri, 2013-05-31 07:04 |
1 |
1,762 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
4,702 |
by fukamitka Mon, 2014-04-21 06:48 |
|
|
rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
2,571 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
5 |
4,701 |
by MRH Mon, 2014-04-21 06:48 |
|
|
acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
7,574 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
19 |
13,496 |
by pledor Mon, 2014-04-21 06:47 |
|
|
Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
7 |
7,263 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
1 |
1,652 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
16 |
12,024 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
2,913 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
2,396 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
5 |
12,672 |
by nawsad Mon, 2014-04-21 06:47 |
|
|
pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
1,918 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
4,341 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
4,084 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,194 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
1,537 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
6,277 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
|
how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
3 |
3,003 |
by eunwook Mon, 2014-04-21 06:47 |
|
|
How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
11 |
9,788 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
1 |
2,343 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
11 |
7,970 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
ddG average energy by dave » Wed, 2013-04-03 03:36 |
1 |
1,998 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
1 |
1,781 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
8 |
6,722 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,041 |
by tsjain Mon, 2014-04-21 06:47 |
|
|
create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
4,264 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
4 |
3,698 |
by Martin Floor Mon, 2014-04-21 06:47 |
|
|
jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,113 |
by ytao Mon, 2014-04-21 06:47 |
|
|
Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
2,802 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
9,446 |
by gsmurphy Mon, 2014-04-21 06:47 |
|
|
multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
3,460 |
by logandonaldson Mon, 2014-04-21 06:47 |
|
|
how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
13,625 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
7,177 |
by qlj Mon, 2014-04-21 06:47 |
|
|
Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
55 |
43,982 |
by bharat_46010 Mon, 2014-04-21 06:47 |
|
|
run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
1 |
1,640 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
5,905 |
by ritacc18 Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
