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Rosetta 3 - General

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Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
8,536 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
883 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
1
998 by ziheng@mit.edu
Thu, 2019-04-25 14:31
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
2,734 by smlewis
Tue, 2017-04-18 08:33
Normal topic Ligand being read as part of protein structure
by MarkusAurelius » Thu, 2021-04-01 11:00
2
814 by MarkusAurelius
Fri, 2021-04-02 11:44
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
4,378 by rosa
Mon, 2014-04-21 06:48
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,166 by frichter
Mon, 2014-04-21 06:47
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
527 by hong wei
Thu, 2021-11-25 02:46
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
576 by YuFei
Wed, 2020-04-22 17:27
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
11,094 by Basantab
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Orphan GPCR
by marsaa » Thu, 2016-10-13 07:45
1
1,828 by rmoretti
Fri, 2016-10-14 16:43
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,350 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
847 by matteoferla
Sat, 2020-06-20 03:56
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
1,690 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Ligand question - aromatic bonds not being enforced?
by Rick_Baker » Wed, 2019-09-11 09:08
1
948 by Rick_Baker
Wed, 2019-09-11 15:35
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
4,123 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
1
797 by rmoretti
Mon, 2020-10-26 19:52
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
7
4,952 by shadrinams
Mon, 2018-02-12 11:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
6,522 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Looking for collaboration.
by ac.research » Mon, 2017-03-06 04:54
1
1,300 by rmoretti
Mon, 2017-03-06 08:37
Normal topic loop design
by varma » Sun, 2012-11-04 21:25
2
3,071 by varma
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
3,372 by japgar
Mon, 2014-04-21 06:47
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,142 by banshee
Mon, 2014-04-21 06:48
Normal topic Loop Insertion/Extension using rosetta suite
by bharat_46010 » Mon, 2011-02-28 04:45
1
1,661 by smlewis
Mon, 2014-04-21 06:47
Hot topic loop model error
by albumns » Sun, 2011-04-03 00:26
21
15,881 by rmoretti
Fri, 2015-12-18 14:26
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
2,634 by ctaylor
Mon, 2014-04-21 06:47
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34
1
1,490 by rmoretti
Thu, 2015-08-06 09:28
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,311 by MRH
Mon, 2014-04-21 06:48
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
3,225 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
5,503 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
2,671 by jklett
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
7,010 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
5,359 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
4,033 by rpache
Mon, 2014-04-21 06:47
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
816 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,225 by berk
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
4,691 by MRH
Mon, 2014-04-21 06:48
Normal topic Loop Modelling: ERROR: switch_to_residue_type_set fails
by smiruthi » Wed, 2012-07-18 14:48
2
2,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
5,119 by jtmacd
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
4,954 by einew
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
9,233 by ablakely7
Wed, 2019-09-11 15:33
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
510 by jeanramos
Mon, 2020-07-13 00:56
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,240 by jarod
Mon, 2014-04-21 06:47
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
1,020 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:18
2
1,397 by jalan
Sun, 2020-04-12 08:01
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
634 by yinasun
Fri, 2019-07-26 02:17
Normal topic MakeRotLib
by yinasun » Sun, 2019-07-28 20:08
1
993 by rmoretti
Mon, 2019-08-26 15:00
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
11,287 by Apiwat
Tue, 2014-03-11 09:42
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
2,232 by ctaylor
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
3,049 by sumukh21
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
1,119 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
5
3,032 by matteoferla
Wed, 2021-09-29 01:58
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
1,783 by rmoretti
Tue, 2014-06-10 11:34
Normal topic manually changing fixbb residue ref energies
by jtmacd » Wed, 2009-11-25 08:43
4
3,104 by jtmacd
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
4,337 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
4,242 by jurkm
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,389 by abdullah
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,555 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,846 by smlewis
Mon, 2014-04-21 06:47
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
1,858 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
464 by Corvin
Wed, 2021-05-19 07:54
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,558 by rmoretti
Tue, 2014-07-01 12:07
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
4,832 by tevang
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,153 by coxford
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
13,470 by pledor
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
4,797 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
4,343 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
3,365 by pardave
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
7,934 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
2,756 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,743 by yuvals
Mon, 2014-10-06 15:02
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,340 by smlewis
Sun, 2017-11-19 20:08
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,338 by lah435
Thu, 2015-02-12 09:16
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,229 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
789 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,138 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
1,873 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,294 by MRH
Mon, 2014-04-21 06:48
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
13,217 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,289 by vmulligan
Tue, 2019-03-26 11:30
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,512 by smlewis
Mon, 2014-04-21 06:48
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
5,515 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,991 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,562 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,348 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,653 by frichter
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
9,167 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
4,321 by jarod
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
8,870 by jurkm
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
3,754 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08
19
16,888 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
3,079 by matteoferla
Sat, 2017-08-05 07:18
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
6,473 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,159 by jkleman
Sat, 2018-04-14 10:55
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,396 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,162 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
2,792 by rmoretti
Thu, 2015-09-17 12:42
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
83 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
2,303 by matteoferla
Mon, 2018-02-26 02:05
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