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Rosetta 3 - General
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,092 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possbile to cluster pdb files? by albumns » Wed, 2010-10-06 02:38 |
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4,726 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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4,159 |
by albumns Mon, 2014-04-21 06:47 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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8,318 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Is it possible to do alanine scanning in Rosetta 3.2.1.? by monos_morpheus » Tue, 2011-04-12 02:36 |
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19,191 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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7,245 |
by albumns Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,147 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
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2,161 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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5,560 |
by krdav Wed, 2016-08-17 12:57 |
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is the RosettaNMR protocol available in Rosetta 3.x? by murgantia » Wed, 2011-01-26 00:39 |
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1,907 |
by smlewis Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,421 |
by rmoretti Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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1,749 |
by rmoretti Fri, 2017-04-21 07:52 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,531 |
by rmoretti Mon, 2014-04-21 06:47 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,258 |
by rmoretti Mon, 2019-07-08 08:05 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,111 |
by rmoretti Wed, 2020-04-01 10:10 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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1,618 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
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1,845 |
by rmoretti Wed, 2015-06-17 12:43 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
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1,209 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Issues with residues and structure changing with FlexPepDock; is this normal? by rnelson » Tue, 2017-08-08 10:06 |
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1,467 |
by Ora Schueler-Furman Sun, 2017-08-20 00:54 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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2,842 |
by rmoretti Wed, 2018-11-21 14:11 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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644 |
by rmoretti Fri, 2022-02-18 11:14 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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2,343 |
by ytao Mon, 2014-04-21 06:47 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
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1,505 |
by ac.research Fri, 2020-02-14 23:33 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
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2,216 |
by SergeyP Sat, 2015-12-19 05:20 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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908 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
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2,875 |
by gw Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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7,303 |
by smlewis Mon, 2014-04-21 06:47 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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2,069 |
by rmoretti Thu, 2014-10-16 10:33 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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1,427 |
by matteoferla Thu, 2018-09-13 06:21 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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9,328 |
by jadolfbr Wed, 2014-11-26 11:40 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,047 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
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1,417 |
by Brian Wiley Sat, 2023-02-04 23:26 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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3,324 |
by smlewis Tue, 2017-04-18 08:33 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
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1,129 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
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4,711 |
by rosa Mon, 2014-04-21 06:48 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
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2,455 |
by frichter Mon, 2014-04-21 06:47 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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884 |
by hong wei Thu, 2021-11-25 02:46 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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724 |
by YuFei Wed, 2020-04-22 17:27 |
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Ligand Docking Positive Control: wt ligand by Basantab » Thu, 2011-10-27 13:36 |
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12,111 |
by Basantab Mon, 2014-04-21 06:47 |
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Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
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2,026 |
by rmoretti Fri, 2016-10-14 16:43 |
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ligand docking with rosetta_scripts.linuxgccrelease by xpzhang » Thu, 2015-02-26 10:57 |
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3,675 |
by rmoretti Mon, 2015-03-30 16:58 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,055 |
by matteoferla Sat, 2020-06-20 03:56 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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1,882 |
by rmoretti Wed, 2015-02-18 09:17 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,175 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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Linker problems when building mini by assaff » Mon, 2009-10-12 01:07 |
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4,631 |
by smlewis Mon, 2014-04-21 06:47 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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1,874 |
by smlewis Mon, 2014-04-21 06:47 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,043 |
by rmoretti Mon, 2020-10-26 19:52 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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5,656 |
by shadrinams Mon, 2018-02-12 11:47 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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7,224 |
by rmoretti Mon, 2014-11-03 16:30 |
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Looking for collaboration. by ac.research » Mon, 2017-03-06 04:54 |
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1,519 |
by rmoretti Mon, 2017-03-06 08:37 |
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loop design by varma » Sun, 2012-11-04 21:25 |
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3,451 |
by varma Mon, 2014-04-21 06:47 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
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3,700 |
by japgar Mon, 2014-04-21 06:47 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
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2,380 |
by banshee Mon, 2014-04-21 06:48 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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1,803 |
by smlewis Mon, 2014-04-21 06:47 |
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loop model error by albumns » Sun, 2011-04-03 00:26 |
21 |
17,515 |
by rmoretti Fri, 2015-12-18 14:26 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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247 |
by Robertofg Tue, 2022-11-22 00:34 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
3 |
2,946 |
by ctaylor Mon, 2014-04-21 06:47 |
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loop modeling by bharat_46010 » Thu, 2015-08-06 01:34 |
1 |
1,672 |
by rmoretti Thu, 2015-08-06 09:28 |
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loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
3,643 |
by MRH Mon, 2014-04-21 06:48 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
3 |
3,474 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
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6,047 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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3,021 |
by jklett Mon, 2014-04-21 06:47 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
9 |
7,533 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
5,756 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
5 |
4,439 |
by rpache Mon, 2014-04-21 06:47 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,014 |
by amelie.stein Mon, 2020-09-28 10:41 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,456 |
by berk Mon, 2014-04-21 06:48 |
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loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
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5,120 |
by MRH Mon, 2014-04-21 06:48 |
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Loop Modelling: ERROR: switch_to_residue_type_set fails by smiruthi » Wed, 2012-07-18 14:48 |
2 |
3,193 |
by smlewis Mon, 2014-04-21 06:47 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
8 |
5,617 |
by jtmacd Mon, 2014-04-21 06:47 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
5 |
5,306 |
by einew Mon, 2014-04-21 06:47 |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
13 |
10,374 |
by ablakely7 Wed, 2019-09-11 15:33 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
0 |
638 |
by jeanramos Mon, 2020-07-13 00:56 |
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make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
2 |
2,457 |
by jarod Mon, 2014-04-21 06:47 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,237 |
by rmoretti Mon, 2019-08-26 15:01 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
2 |
1,697 |
by jalan Sun, 2020-04-12 08:01 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
752 |
by yinasun Fri, 2019-07-26 02:17 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
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1,216 |
by rmoretti Mon, 2019-08-26 15:00 |
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make_fragment.pl Error! by Apiwat » Sat, 2014-02-15 13:35 |
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12,312 |
by Apiwat Tue, 2014-03-11 09:42 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
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2,491 |
by ctaylor Mon, 2014-04-21 06:47 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
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3,320 |
by sumukh21 Mon, 2014-04-21 06:47 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,288 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
5 |
3,736 |
by matteoferla Wed, 2021-09-29 01:58 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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1,952 |
by rmoretti Tue, 2014-06-10 11:34 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
4 |
3,456 |
by jtmacd Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
4,812 |
by rmoretti Mon, 2014-04-21 06:47 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
3 |
4,520 |
by jurkm Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,504 |
by abdullah Mon, 2014-04-21 06:47 |
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max_nn by anusmita_sahoo » Thu, 2010-03-11 02:21 |
1 |
1,754 |
by smlewis Mon, 2014-04-21 06:47 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
1 |
2,015 |
by smlewis Mon, 2014-04-21 06:47 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,103 |
by aloshbau Sun, 2016-02-14 20:14 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
0 |
623 |
by Corvin Wed, 2021-05-19 07:54 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
1 |
1,724 |
by rmoretti Tue, 2014-07-01 12:07 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
5,320 |
by tevang Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,327 |
by coxford Mon, 2014-04-21 06:47 |
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membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
19 |
14,760 |
by pledor Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
5,189 |
by arthuc01 Mon, 2014-04-21 06:47 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
4,701 |
by arthuc01 Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
4 |
3,672 |
by pardave Mon, 2014-04-21 06:47 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
8,689 |
by smlewis Mon, 2014-04-21 06:47 |
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