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Rosetta 3 - General
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possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
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2,354 |
by jtmacd Mon, 2014-04-21 06:47 |
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3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
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2,355 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
4 |
2,365 |
by nannemdp Fri, 2021-02-05 06:49 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,367 |
by smlewis Mon, 2014-04-21 06:47 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
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2,367 |
by mpacella Mon, 2014-04-21 06:47 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,374 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,378 |
by banshee Mon, 2014-04-21 06:48 |
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
2 |
2,388 |
by smlewis Mon, 2014-04-21 06:47 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
2 |
2,388 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
2 |
2,388 |
by exchhattu Mon, 2014-04-21 06:47 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
2 |
2,395 |
by qlj Thu, 2014-03-06 22:20 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
2 |
2,396 |
by Lati Tue, 2016-01-12 13:28 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,402 |
by smlewis Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
2 |
2,403 |
by doranhen Mon, 2014-04-21 06:47 |
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error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
1 |
2,407 |
by jtmacd Mon, 2014-04-21 06:47 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
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2,409 |
by smlewis Mon, 2014-04-21 06:47 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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2,412 |
by jadolfbr Sun, 2016-12-11 10:53 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,417 |
by rmoretti Mon, 2014-04-21 06:47 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
2 |
2,417 |
by asbelx Thu, 2018-04-26 00:23 |
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weird prolines with hydroxyls from fixbb.linuxgccrelease by louisclark » Wed, 2010-08-25 15:01 |
2 |
2,427 |
by louisclark Mon, 2014-04-21 06:47 |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
1 |
2,427 |
by rmoretti Mon, 2014-04-21 06:47 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
1 |
2,430 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
2 |
2,432 |
by monteirotorres Mon, 2014-04-21 06:47 |
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B3-protein design using rosettaScript movers by straore » Mon, 2015-03-16 05:05 |
2 |
2,434 |
by straore Fri, 2015-04-17 01:54 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
1 |
2,436 |
by smlewis Mon, 2014-04-21 06:47 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,440 |
by smlewis Mon, 2014-04-21 06:47 |
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Run PackRotamersMover on specified rotamer set by pachecoj » Mon, 2014-11-10 06:51 |
2 |
2,448 |
by pachecoj Tue, 2014-11-11 19:30 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
2 |
2,451 |
by frichter Mon, 2014-04-21 06:47 |
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Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,454 |
by berk Mon, 2014-04-21 06:48 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
2 |
2,456 |
by SergeyP Sun, 2015-12-20 01:44 |
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make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
2 |
2,456 |
by jarod Mon, 2014-04-21 06:47 |
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Can't find the source code of FlexPepDock protocol in Rosetta3.1 by SunH » Thu, 2010-09-16 06:28 |
2 |
2,466 |
by barak Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,468 |
by smlewis Mon, 2014-04-21 06:47 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
1 |
2,468 |
by rmoretti Mon, 2017-08-28 09:32 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,481 |
by Lindsay Mon, 2014-04-21 06:47 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,482 |
by aaj Mon, 2016-02-22 07:43 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,485 |
by ctaylor Mon, 2014-04-21 06:47 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
2 |
2,489 |
by jtmacd Mon, 2014-04-21 06:47 |
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RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
1 |
2,490 |
by smlewis Mon, 2014-04-21 06:47 |
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all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
2 |
2,498 |
by zwenthor Mon, 2014-04-21 06:47 |
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FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
2,505 |
by swoody Mon, 2014-04-21 06:47 |
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Selecting Top Scoring Decoys by kalabharath » Thu, 2011-10-20 22:08 |
2 |
2,506 |
by rmoretti Mon, 2014-04-21 06:47 |
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hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
2 |
2,507 |
by aaj Mon, 2016-02-29 04:45 |
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Cluster application, How does it sort decoys by energy? by Apiwat » Wed, 2014-04-16 01:52 |
2 |
2,512 |
by Apiwat Thu, 2014-04-17 09:56 |
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what is the relationship and difference between Rosetta 3.0 and miniRosetta by jarod » Thu, 2010-05-06 20:57 |
2 |
2,512 |
by jarod Mon, 2014-04-21 06:47 |
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Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
2 |
2,515 |
by rmoretti Tue, 2015-08-18 17:11 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
3 |
2,520 |
by rmoretti Tue, 2017-04-18 13:49 |
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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
2 |
2,530 |
by rmoretti Mon, 2014-04-21 06:47 |
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Peptide building by berk » Thu, 2015-07-30 06:53 |
2 |
2,532 |
by rmoretti Thu, 2015-08-06 09:21 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
1 |
2,532 |
by smlewis Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
1 |
2,541 |
by smlewis Fri, 2014-02-28 05:45 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,546 |
by kaue Mon, 2014-04-21 06:47 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
2,557 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
2 |
2,558 |
by smlewis Mon, 2014-04-21 06:47 |
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relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
2,560 |
by allan.ferrari Tue, 2017-01-03 05:02 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
2 |
2,563 |
by DanielK Mon, 2014-04-21 06:47 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
1 |
2,566 |
by amelie Tue, 2014-09-30 14:29 |
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metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
2 |
2,568 |
by lah435 Thu, 2015-02-12 09:16 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
0 |
2,568 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
2,577 |
by felipet Sat, 2016-07-09 09:50 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
2,580 |
by SergeyP Mon, 2018-11-12 09:19 |
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Write PDB with multiple side-chain configurations by pachecoj » Tue, 2014-09-30 21:42 |
2 |
2,580 |
by pachecoj Thu, 2014-10-09 18:15 |
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force hydrogen rebuild on input by jtmacd » Mon, 2013-11-18 08:28 |
2 |
2,582 |
by jtmacd Mon, 2014-04-21 06:48 |
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Cluster Error by justin » Mon, 2010-04-26 00:06 |
2 |
2,583 |
by justin Mon, 2014-04-21 06:47 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
2 |
2,584 |
by ac.research Sat, 2019-08-03 08:12 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
2,585 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
4 |
2,587 |
by eminegenetics Fri, 2018-09-21 07:42 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,588 |
by smlewis Mon, 2014-04-21 06:47 |
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Building Rosetta 3.1 for cs-Rosetta by zdn3023 » Fri, 2010-02-26 14:31 |
2 |
2,592 |
by zdn3023 Mon, 2014-04-21 06:47 |
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PUBLICATION using Rosetta as a method by phanvy » Thu, 2014-06-19 08:33 |
2 |
2,593 |
by phanvy Sun, 2014-06-22 23:29 |
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Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,593 |
by smlewis Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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2,593 |
by burkheadlab Mon, 2014-04-21 06:47 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
2 |
2,593 |
by renedominik Sat, 2018-07-07 03:03 |
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Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
2,594 |
by jhbrown Mon, 2014-04-21 06:47 |
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Configuration of Robetta fragment libraries by Run » Fri, 2014-01-24 23:03 |
2 |
2,594 |
by Run Mon, 2014-04-21 06:48 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
2 |
2,596 |
by exchhattu Mon, 2014-04-21 06:47 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
2 |
2,597 |
by aroop Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,599 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
2,602 |
by doranhen Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
2 |
2,602 |
by smiruthi Mon, 2014-04-21 06:47 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
2,607 |
by smlewis Thu, 2016-06-30 08:44 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
2 |
2,609 |
by samuelrpita Thu, 2015-08-06 14:23 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,610 |
by MRH Mon, 2014-04-21 06:48 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
2 |
2,610 |
by phanvy Wed, 2014-10-15 21:41 |
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Abinitio Structure Prediction - Sanity Test by westleys » Tue, 2010-06-01 00:28 |
2 |
2,610 |
by westleys Mon, 2014-04-21 06:47 |
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error running rosetta3.1 demos by lvtun » Thu, 2010-10-21 20:43 |
2 |
2,614 |
by lvtun Mon, 2014-04-21 06:47 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
2 |
2,622 |
by Lindsay Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
5 |
2,632 |
by matteoferla Wed, 2019-11-20 02:32 |
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cluster input_score_filter by lj269 » Thu, 2011-09-01 15:29 |
2 |
2,633 |
by attesor Fri, 2014-10-31 04:23 |
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Rosetta Dock by swoody » Tue, 2009-11-10 16:20 |
1 |
2,640 |
by smlewis Mon, 2014-04-21 06:47 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
2,641 |
by jadolfbr Mon, 2014-04-21 06:47 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
2,645 |
by frits Mon, 2014-04-21 06:48 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
2 |
2,645 |
by pitmand Tue, 2015-05-26 12:20 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
1 |
2,651 |
by IAndre Mon, 2014-04-21 06:47 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
2,651 |
by erin_cutts Mon, 2014-04-21 06:48 |
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relax from a silent input file by mintseris » Thu, 2010-04-29 19:54 |
2 |
2,651 |
by mintseris Mon, 2014-04-21 06:47 |
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Rosetta membrane blastpgp/psiblast database problem for lips4 generation by fbarrera » Tue, 2014-09-16 11:45 |
1 |
2,659 |
by rmoretti Wed, 2014-09-17 10:06 |
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Building Rosetta Problem: Processor architecture unsupported? by jalfaro » Tue, 2010-03-23 05:48 |
1 |
2,662 |
by reddybg Mon, 2014-04-21 06:47 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
3 |
2,665 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
2,674 |
by smlewis Tue, 2016-12-20 10:40 |
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