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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,317 by smlewis
Mon, 2014-04-21 06:47
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
2,319 by DanielK
Mon, 2014-04-21 06:47
Normal topic Configuration of Robetta fragment libraries
by Run » Fri, 2014-01-24 23:03
2
2,319 by Run
Mon, 2014-04-21 06:48
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
2,319 by lvtun
Mon, 2014-04-21 06:47
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
2,320 by smlewis
Tue, 2016-12-20 10:40
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
2,324 by rmoretti
Fri, 2018-08-03 11:39
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
2,326 by rmoretti
Thu, 2018-06-28 14:09
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
2,329 by phanvy
Sun, 2014-06-22 23:29
Normal topic Having trouble producing a .pdb file from a silent output file after running abinitio relax
by burkheadlab » Wed, 2011-03-09 12:48
2
2,329 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34
2
2,337 by pitmand
Tue, 2015-05-26 12:20
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22
2
2,344 by frits
Mon, 2014-04-21 06:48
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,344 by jrcf
Tue, 2016-05-03 17:40
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
2,348 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,348 by amelie
Tue, 2014-09-30 14:29
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
2,348 by rmoretti
Wed, 2018-11-21 14:11
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
2,351 by ssrb
Tue, 2018-03-06 14:15
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10
2
2,354 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29
2
2,358 by attesor
Fri, 2014-10-31 04:23
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
2,358 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
2,360 by smiruthi
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,363 by kaue
Mon, 2014-04-21 06:47
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,367 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43
2
2,371 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
2,377 by aroop
Mon, 2014-04-21 06:47
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
2,378 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,386 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
2,388 by aminzia
Fri, 2019-07-26 13:14
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
2,391 by kalabharath
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
2,394 by dave
Mon, 2014-04-21 06:47
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
2,397 by molon
Mon, 2014-04-21 06:47
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
2,406 by ac.research
Sun, 2017-09-24 11:25
Normal topic Rosetta Dock
by swoody » Tue, 2009-11-10 16:20
1
2,409 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax from a silent input file
by mintseris » Thu, 2010-04-29 19:54
2
2,410 by mintseris
Mon, 2014-04-21 06:47
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
2,418 by aaxx
Wed, 2019-11-06 01:44
Normal topic Rosetta membrane blastpgp/psiblast database problem for lips4 generation
by fbarrera » Tue, 2014-09-16 11:45
1
2,420 by rmoretti
Wed, 2014-09-17 10:06
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,421 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,422 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
2,425 by ela
Thu, 2018-08-09 08:04
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
2,427 by petrikigor
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
2,427 by Anatol
Mon, 2014-04-21 06:47
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,428 by phanvy
Wed, 2014-12-10 00:17
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
2,433 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
2,437 by msun
Mon, 2014-04-21 06:47
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
2,440 by rmoretti
Mon, 2016-03-07 14:20
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
2,451 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
2,457 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
2,457 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,463 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
2,469 by smlewis
Thu, 2016-01-14 08:19
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,474 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
2,474 by ndousis
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
2,476 by smlewis
Tue, 2014-12-23 13:58
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,477 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,483 by IAndre
Mon, 2014-04-21 06:47
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
2,485 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
2,487 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,489 by reddybg
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
2,491 by alejandro
Mon, 2014-04-21 06:47
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
2,496 by pledor
Mon, 2014-04-21 06:47
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,501 by rmoretti
Fri, 2015-07-03 13:24
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,506 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
2,511 by rmoretti
Sat, 2017-12-16 12:19
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
2,512 by smlewis
Fri, 2016-07-29 07:43
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
2,522 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
2,527 by Trentage
Mon, 2014-04-21 06:47
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,536 by rmoretti
Mon, 2015-05-25 11:00
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
2,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
2,546 by justin
Mon, 2014-04-21 06:47
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
2,546 by wangyr
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,546 by smlewis
Mon, 2014-04-21 06:47
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
2,550 by einew
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
2,556 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
2,559 by jklett
Mon, 2014-04-21 06:47
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,560 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,562 by rmoretti
Mon, 2014-04-21 06:48
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
2,574 by fred
Fri, 2014-04-04 11:34
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
2,579 by smlewis
Mon, 2014-04-21 06:47
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
2,583 by smlewis
Mon, 2014-04-21 06:47
Normal topic "caught exception" for PDB with membrane "DUM" residues
by nitroamos » Wed, 2018-05-30 08:35
2
2,583 by Awagner7
Tue, 2020-04-28 10:51
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,584 by doranhen
Mon, 2014-04-21 06:47
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
2,586 by everyday847
Tue, 2017-11-28 13:07
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
2,586 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
2,589 by smlewis
Tue, 2018-06-12 10:54
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
2,590 by ctaylor
Mon, 2014-04-21 06:47
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
2,590 by smlewis
Wed, 2018-04-11 11:45
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
2,591 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
2,592 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
2,593 by helenah
Tue, 2020-11-03 04:33
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
2,593 by rmoretti
Mon, 2018-01-15 15:24
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
2,593 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
2,610 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,612 by rmoretti
Thu, 2015-12-03 15:14
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
2,620 by jklett
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
2,621 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
2,622 by rmoretti
Mon, 2014-09-29 13:45
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,625 by gw
Mon, 2014-04-21 06:47
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
2,627 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
2,629 by scombs
Mon, 2014-04-21 06:47
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,629 by vsjasion
Mon, 2014-04-21 06:47
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