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Rosetta 3 - General

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Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
2,643 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,645 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,654 by smlewis
Mon, 2014-04-21 06:47
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,656 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,657 by aaj
Mon, 2016-02-22 07:50
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,661 by MarkW
Fri, 2015-07-03 15:36
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,661 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,666 by exchhattu
Mon, 2014-04-21 06:47
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,666 by rmoretti
Mon, 2014-04-21 06:47
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,670 by smlewis
Mon, 2014-04-21 06:47
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,671 by smlewis
Sun, 2017-01-15 18:10
Normal topic Using NCAAs in protocols with native heme proteins
by htorres » Wed, 2018-01-24 08:32
2
2,673 by htorres
Mon, 2018-02-05 06:53
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,674 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,676 by gerdos
Fri, 2015-10-16 03:01
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,680 by smlewis
Mon, 2014-04-21 06:47
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
2,680 by everyday847
Mon, 2021-03-29 20:19
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,684 by jtmacd
Mon, 2014-04-21 06:47
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
2,687 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,693 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,694 by smlewis
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,698 by ytao
Mon, 2014-04-21 06:47
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,705 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,705 by rmoretti
Fri, 2015-01-09 10:59
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,716 by banshee
Mon, 2014-04-21 06:48
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,719 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,720 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,721 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,722 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,728 by road runner
Tue, 2015-12-01 10:08
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,730 by smlewis
Mon, 2014-04-21 06:47
Normal topic Refinement of a PDB structure containing multiple models
by ahmadkhalifa » Wed, 2018-04-18 07:44
3
2,732 by smlewis
Wed, 2018-04-18 19:03
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
2,732 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,746 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,746 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
2,746 by rmoretti
Wed, 2018-11-21 13:50
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,748 by smlewis
Mon, 2014-04-21 06:47
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,748 by exchhattu
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,749 by rmoretti
Mon, 2016-03-14 07:58
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,749 by rmoretti
Thu, 2017-08-03 08:50
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,752 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how same random seeds can be used in rosetta for mpi run.
by exchhattu » Wed, 2009-10-28 22:09
1
2,753 by smlewis
Mon, 2014-04-21 06:47
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
2,763 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,767 by doranhen
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,767 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
2,771 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem with protein and ligand preparation before ligand docking.
by zg148119@ohio.edu » Fri, 2021-02-05 06:47
3
2,771 by rmoretti
Tue, 2021-02-09 09:22
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,779 by louisclark
Mon, 2014-04-21 06:47
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,780 by qlj
Thu, 2014-03-06 22:20
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,785 by jarod
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
2,791 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,795 by barak
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,796 by straore
Fri, 2015-04-17 01:54
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
2,797 by ylwang
Wed, 2018-11-14 03:03
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,798 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,798 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,804 by kaue
Mon, 2014-04-21 06:47
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29
2
2,808 by berk
Mon, 2014-04-21 06:48
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,808 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
2,809 by smlewis
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,810 by pachecoj
Tue, 2014-11-11 19:30
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,813 by jtmacd
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,818 by frichter
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,821 by Lati
Tue, 2016-01-12 13:28
Normal topic fixbb design use
by Lindsay » Fri, 2012-03-23 09:05
2
2,825 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,828 by smlewis
Mon, 2014-04-21 06:47
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,834 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
2,836 by renedominik
Mon, 2018-06-04 00:04
Normal topic problem parsing a THR residue
by decrSTL » Wed, 2019-08-21 12:25
4
2,837 by decrSTL
Tue, 2019-08-27 10:24
Normal topic filter score by I_sc and keep top 1000
by aaj » Tue, 2016-01-19 07:13
2
2,840 by aaj
Mon, 2016-02-22 07:43
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,844 by amelie
Tue, 2014-09-30 14:29
Normal topic rama energy term and explicit zero
by SergeyP » Sat, 2015-12-19 05:25
2
2,848 by SergeyP
Sun, 2015-12-20 01:44
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,848 by zwenthor
Mon, 2014-04-21 06:47
Normal topic what is the relationship and difference between Rosetta 3.0 and miniRosetta
by jarod » Thu, 2010-05-06 20:57
2
2,858 by jarod
Mon, 2014-04-21 06:47
Normal topic FixBB design design_contrast
by swoody » Tue, 2009-06-30 11:48
2
2,860 by swoody
Mon, 2014-04-21 06:47
Normal topic Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3?
by jiongzhang » Fri, 2012-04-20 13:35
2
2,861 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,862 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,862 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
2,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,872 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster application, How does it sort decoys by energy?
by Apiwat » Wed, 2014-04-16 01:52
2
2,873 by Apiwat
Thu, 2014-04-17 09:56
Normal topic I generated a table of images & info of the premade NCAA params in the database
by matteoferla » Sun, 2020-02-16 06:27
4
2,877 by matteoferla
Sat, 2020-03-21 09:14
Normal topic Cluster Error
by justin » Mon, 2010-04-26 00:06
2
2,881 by justin
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio with disordered regions
by smiruthi » Thu, 2011-12-15 14:37
2
2,886 by smiruthi
Mon, 2014-04-21 06:47
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,888 by Kazu
Mon, 2020-05-18 10:52
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
2,893 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
2,898 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Symmetric docking - tetramer of trimers
by SenyorDrew » Fri, 2011-04-29 08:26
1
2,901 by IAndre
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
2,903 by matteoferla
Mon, 2019-12-23 07:24
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
2
2,909 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,927 by rmoretti
Mon, 2017-08-28 09:32
Normal topic hydroxyproline patching problem
by aaj » Mon, 2016-02-22 07:33
2
2,927 by aaj
Mon, 2016-02-29 04:45
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
2,929 by rmoretti
Thu, 2015-08-06 09:21
Normal topic Building Rosetta Problem: Processor architecture unsupported?
by jalfaro » Tue, 2010-03-23 05:48
1
2,929 by reddybg
Mon, 2014-04-21 06:47
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
2,932 by aroop
Mon, 2014-04-21 06:47
Normal topic Ab initio structure prediction for long amino acid sequence
by maruhuang » Fri, 2019-08-02 03:38
4
2,934 by maruhuang
Thu, 2019-09-26 18:55
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,934 by lah435
Thu, 2015-02-12 09:16
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,937 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08
2
2,937 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
2,939 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45
2
2,940 by doranhen
Mon, 2014-04-21 06:47
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