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Rosetta 3 - General

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Normal topic Fragment file viewers
by MajorID » Fri, 2012-02-24 20:57
2
2,198 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
2,197 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19
2
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14
2
2,190 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The -symmetry:perturb_rigid_body_dofs flag
by doranhen » Sat, 2012-04-28 13:01
2
2,189 by doranhen
Mon, 2014-04-21 06:47
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
2,187 by SergeyP
Mon, 2018-11-12 09:19
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,184 by mpacella
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
2,171 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,170 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,167 by frichter
Mon, 2014-04-21 06:47
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,164 by qlj
Thu, 2014-03-06 22:20
Normal topic could ab initio support running mpi?
by albumns » Mon, 2010-07-05 01:13
1
2,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,156 by coxford
Mon, 2014-04-21 06:47
Normal topic abintio clustering - funnel plot
by vamsi » Fri, 2011-03-25 09:18
1
2,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calibur-linux binary or source code availability?
by jasnyderjr » Sat, 2016-12-10 23:36
2
2,152 by jadolfbr
Sun, 2016-12-11 10:53
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,149 by smlewis
Mon, 2014-04-21 06:47
Normal topic RASREC - finding lowest energy structure
by Lati » Fri, 2015-11-20 03:08
2
2,148 by Lati
Tue, 2016-01-12 13:28
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,148 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33
2
2,145 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26
2
2,144 by banshee
Mon, 2014-04-21 06:48
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,137 by rmoretti
Tue, 2015-07-14 15:27
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
2,136 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic restricting space in a design
by ast » Tue, 2012-01-17 06:31
2
2,133 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,132 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
2,131 by ac.research
Sat, 2019-08-03 08:12
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,130 by gipsonb
Mon, 2014-04-21 06:47
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,130 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47
2
2,125 by rmoretti
Fri, 2015-01-09 10:59
Normal topic possible idealize app bug - residues being deleted
by jtmacd » Mon, 2009-06-08 06:27
2
2,119 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,119 by londonir
Mon, 2014-04-21 06:47
Normal topic prepack vs. relax with bb_cst
by Anonymous » Mon, 2012-06-25 06:50
1
2,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47
2
2,113 by ytao
Mon, 2014-04-21 06:47
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,106 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,105 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,104 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,102 by smlewis
Mon, 2014-04-21 06:47
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,097 by rmoretti
Mon, 2014-06-16 08:23
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,093 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Getting started with Rosetta
by myang » Tue, 2009-04-07 16:25
1
2,091 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,088 by road runner
Tue, 2015-12-01 10:08
Normal topic SnugDock equivalent in newer Rosetta code
by SenyorDrew » Tue, 2016-03-29 09:16
2
2,086 by SenyorDrew
Wed, 2016-04-06 10:52
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27
1
2,086 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,083 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic InterfaceAnalyzer atom subset
by Parker.deWaal » Sun, 2016-03-13 13:41
2
2,075 by rmoretti
Mon, 2016-03-14 07:58
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
0
2,074 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43
2
2,070 by MarkW
Fri, 2015-07-03 15:36
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,067 by smlewis
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,064 by pachecoj
Wed, 2014-10-15 15:12
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
2,062 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,062 by gerdos
Fri, 2015-10-16 03:01
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,062 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,060 by rmoretti
Mon, 2014-04-21 06:48
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,059 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,058 by aaj
Mon, 2016-02-22 07:50
Normal topic Intermediate file insertion
by exchhattu » Wed, 2009-09-02 18:44
2
2,056 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
2,053 by matteoferla
Wed, 2019-11-20 02:32
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
2,051 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Evaluate Docking Result
by byin » Thu, 2014-07-03 11:31
1
2,049 by rmoretti
Wed, 2014-07-16 08:07
Normal topic problems with cluster program
by umeshghosh » Thu, 2010-04-08 07:45
1
2,044 by smlewis
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,043 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic the problem in making fragments
by croshong » Thu, 2009-12-03 17:15
1
2,043 by smlewis
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,033 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
2,031 by renedominik
Mon, 2018-06-04 00:04
Normal topic generating 10 lowest energy structures from abinitio
by isengupta13 » Fri, 2010-05-07 11:44
2
2,030 by ndousis
Mon, 2014-04-21 06:47
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
2,030 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,029 by smlewis
Sun, 2017-01-15 18:10
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,023 by smlewis
Mon, 2014-04-21 06:47
Normal topic Intel Compiler and OS X Intel
by bene » Tue, 2009-10-20 10:20
1
2,021 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic Possible documentation error
by imurch » Tue, 2012-04-17 00:11
1
2,016 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Snugdock and antibody modelling
by sudhar » Thu, 2010-06-10 08:13
1
2,010 by smlewis
Mon, 2014-04-21 06:47
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
2,008 by matteoferla
Thu, 2018-10-04 01:30
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,004 by mmarlett
Thu, 2016-06-16 07:06
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,002 by rmoretti
Tue, 2014-02-11 06:24
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
2,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic Jump::random_trans strange behavior
by SergeyP » Tue, 2015-11-03 07:56
2
1,999 by SergeyP
Sat, 2015-12-19 05:20
Normal topic Is it possible to use two broker files
by kalabharath » Wed, 2011-06-08 01:01
1
1,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
1,998 by exchhattu
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
1,998 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
1,994 by ylwang
Wed, 2018-11-14 03:03
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
1,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
1,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
1,992 by dnasmith
Mon, 2014-04-21 06:47
Normal topic The concept of unsatisfied hydrogen bond
by asbelx » Wed, 2018-04-25 01:32
2
1,991 by asbelx
Thu, 2018-04-26 00:23
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
1,989 by rmoretti
Thu, 2017-08-03 08:50
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
1,988 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
1,981 by SergeyP
Fri, 2017-03-10 11:16
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
1,981 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to score the crystal structure?
by vsjasion » Fri, 2011-11-18 15:49
1
1,980 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,976 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
1,976 by IAndre
Mon, 2014-04-21 06:47
Normal topic start pose and native pose don't match in lengh
by zhisheng » Thu, 2011-12-15 10:23
1
1,971 by smlewis
Mon, 2014-04-21 06:47
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
1,968 by smlewis
Mon, 2014-04-21 06:47
Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
1,966 by Kazu
Mon, 2020-05-18 10:52
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
1,962 by smlewis
Mon, 2014-04-21 06:47
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,960 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
1,958 by smlewis
Mon, 2014-04-21 06:47
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