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Rosetta 3 - General
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Fragment file viewers by MajorID » Fri, 2012-02-24 20:57 |
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2,198 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
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2,197 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
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2,194 |
by smlewis Mon, 2014-04-21 06:47 |
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is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
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2,190 |
by rmoretti Mon, 2014-04-21 06:47 |
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The -symmetry:perturb_rigid_body_dofs flag by doranhen » Sat, 2012-04-28 13:01 |
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2,189 |
by doranhen Mon, 2014-04-21 06:47 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
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2,187 |
by SergeyP Mon, 2018-11-12 09:19 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
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2,184 |
by mpacella Mon, 2014-04-21 06:47 |
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Problem with running turtorial of rna denovo by myle » Fri, 2017-04-14 09:23 |
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2,171 |
by rmoretti Tue, 2017-04-18 13:49 |
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Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
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2,170 |
by monteirotorres Mon, 2014-04-21 06:47 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
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2,167 |
by frichter Mon, 2014-04-21 06:47 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
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2,164 |
by qlj Thu, 2014-03-06 22:20 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,159 |
by smlewis Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,156 |
by coxford Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
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2,154 |
by smlewis Mon, 2014-04-21 06:47 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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2,152 |
by jadolfbr Sun, 2016-12-11 10:53 |
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3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
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2,149 |
by smlewis Mon, 2014-04-21 06:47 |
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RASREC - finding lowest energy structure by Lati » Fri, 2015-11-20 03:08 |
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2,148 |
by Lati Tue, 2016-01-12 13:28 |
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Bug in Loop Modeling by dseelig » Thu, 2010-09-23 05:55 |
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2,148 |
by smlewis Mon, 2014-04-21 06:47 |
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Can't read constraint type by allan.ferrari » Fri, 2015-08-28 12:33 |
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2,145 |
by allan.ferrari Mon, 2015-09-21 21:54 |
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loop file by banshee » Tue, 2013-06-04 13:26 |
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2,144 |
by banshee Mon, 2014-04-21 06:48 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,137 |
by rmoretti Tue, 2015-07-14 15:27 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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2,136 |
by jadolfbr Thu, 2020-09-24 10:04 |
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restricting space in a design by ast » Tue, 2012-01-17 06:31 |
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2,133 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
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2,132 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
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2,131 |
by ac.research Sat, 2019-08-03 08:12 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
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2,130 |
by gipsonb Mon, 2014-04-21 06:47 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
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2,130 |
by exchhattu Mon, 2014-04-21 06:47 |
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Problem with ClashCountCalculator by masterofpuppets » Wed, 2015-01-07 04:47 |
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2,125 |
by rmoretti Fri, 2015-01-09 10:59 |
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possible idealize app bug - residues being deleted by jtmacd » Mon, 2009-06-08 06:27 |
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2,119 |
by jtmacd Mon, 2014-04-21 06:47 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,119 |
by londonir Mon, 2014-04-21 06:47 |
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prepack vs. relax with bb_cst by Anonymous » Mon, 2012-06-25 06:50 |
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2,114 |
by smlewis Mon, 2014-04-21 06:47 |
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jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
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2,113 |
by ytao Mon, 2014-04-21 06:47 |
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Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
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2,106 |
by smlewis Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
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2,106 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
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2,105 |
by rmoretti Mon, 2014-04-21 06:47 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
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2,104 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
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2,104 |
by smlewis Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,102 |
by smlewis Mon, 2014-04-21 06:47 |
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no template pdb provided for alignment by HZHANG020 » Sat, 2014-06-14 06:27 |
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2,097 |
by rmoretti Mon, 2014-06-16 08:23 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
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2,093 |
by rmoretti Mon, 2017-08-28 09:32 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,091 |
by smlewis Mon, 2014-04-21 06:47 |
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Cannot create cst files from upl files by road runner » Wed, 2015-11-11 22:07 |
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2,088 |
by road runner Tue, 2015-12-01 10:08 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
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2,086 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,086 |
by rmoretti Fri, 2015-07-03 12:58 |
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Number of conformations needed by JadAbbass » Sun, 2014-02-16 13:21 |
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2,083 |
by JadAbbass Tue, 2014-02-18 07:27 |
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InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
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2,075 |
by rmoretti Mon, 2016-03-14 07:58 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,074 |
by Anonymous Mon, 2014-04-21 06:47 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
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2,070 |
by MarkW Fri, 2015-07-03 15:36 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,067 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions on energy oddities by pachecoj » Wed, 2014-10-15 13:26 |
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2,064 |
by pachecoj Wed, 2014-10-15 15:12 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,062 |
by smlewis Mon, 2014-04-21 06:47 |
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Running time of Rosetta/FlexPepDock by gerdos » Thu, 2015-10-15 02:14 |
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2,062 |
by gerdos Fri, 2015-10-16 03:01 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
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2,062 |
by rmoretti Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,060 |
by rmoretti Mon, 2014-04-21 06:48 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,059 |
by smlewis Mon, 2014-04-21 06:47 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,058 |
by aaj Mon, 2016-02-22 07:50 |
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Intermediate file insertion by exchhattu » Wed, 2009-09-02 18:44 |
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2,056 |
by exchhattu Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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2,053 |
by matteoferla Wed, 2019-11-20 02:32 |
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input secondary structure prediction to AbinitioRelax by biofisikx » Mon, 2010-08-09 12:36 |
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2,051 |
by biofisikx Mon, 2014-04-21 06:47 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
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2,049 |
by rmoretti Wed, 2014-07-16 08:07 |
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problems with cluster program by umeshghosh » Thu, 2010-04-08 07:45 |
1 |
2,044 |
by smlewis Mon, 2014-04-21 06:47 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,043 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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the problem in making fragments by croshong » Thu, 2009-12-03 17:15 |
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2,043 |
by smlewis Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,033 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,031 |
by renedominik Mon, 2018-06-04 00:04 |
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generating 10 lowest energy structures from abinitio by isengupta13 » Fri, 2010-05-07 11:44 |
2 |
2,030 |
by ndousis Mon, 2014-04-21 06:47 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
0 |
2,030 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,029 |
by smlewis Sun, 2017-01-15 18:10 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
1 |
2,023 |
by smlewis Mon, 2014-04-21 06:47 |
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Intel Compiler and OS X Intel by bene » Tue, 2009-10-20 10:20 |
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2,021 |
by smlewis Mon, 2014-04-21 06:47 |
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Predict the N-terminal of a protein by aliaselin » Mon, 2010-11-08 03:23 |
2 |
2,016 |
by smlewis Mon, 2014-04-21 06:47 |
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Possible documentation error by imurch » Tue, 2012-04-17 00:11 |
1 |
2,016 |
by Anonymous Mon, 2014-04-21 06:47 |
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Snugdock and antibody modelling by sudhar » Thu, 2010-06-10 08:13 |
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2,010 |
by smlewis Mon, 2014-04-21 06:47 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
2,008 |
by matteoferla Thu, 2018-10-04 01:30 |
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Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,004 |
by mmarlett Thu, 2016-06-16 07:06 |
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Can rosetta model cyclic peptide? by Apiwat » Fri, 2014-02-07 02:08 |
1 |
2,002 |
by rmoretti Tue, 2014-02-11 06:24 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,000 |
by smlewis Mon, 2014-04-21 06:47 |
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Jump::random_trans strange behavior by SergeyP » Tue, 2015-11-03 07:56 |
2 |
1,999 |
by SergeyP Sat, 2015-12-19 05:20 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
1 |
1,999 |
by smlewis Mon, 2014-04-21 06:47 |
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runtime error by exchhattu » Wed, 2010-03-03 02:54 |
2 |
1,998 |
by exchhattu Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
1 |
1,998 |
by rmoretti Mon, 2014-04-21 06:47 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
1,994 |
by ylwang Wed, 2018-11-14 03:03 |
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Read svn acces or acces to developmen version of rosetta by knutjbj » Thu, 2010-12-09 17:06 |
1 |
1,994 |
by smlewis Mon, 2014-04-21 06:47 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
1 |
1,994 |
by smlewis Mon, 2014-04-21 06:47 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
2 |
1,992 |
by dnasmith Mon, 2014-04-21 06:47 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
2 |
1,991 |
by asbelx Thu, 2018-04-26 00:23 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
3 |
1,989 |
by rmoretti Thu, 2017-08-03 08:50 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
1,988 |
by jhbrown Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
1,982 |
by smlewis Mon, 2014-04-21 06:47 |
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scoring with omega energy term by SergeyP » Thu, 2017-03-09 12:03 |
2 |
1,981 |
by SergeyP Fri, 2017-03-10 11:16 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
1 |
1,981 |
by smlewis Mon, 2014-04-21 06:47 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
1 |
1,980 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
1 |
1,976 |
by smlewis Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
1 |
1,976 |
by IAndre Mon, 2014-04-21 06:47 |
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start pose and native pose don't match in lengh by zhisheng » Thu, 2011-12-15 10:23 |
1 |
1,971 |
by smlewis Mon, 2014-04-21 06:47 |
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harmonic_Calphas in RosettaLigand flags.txt by cpkuntz » Wed, 2010-07-14 08:57 |
2 |
1,968 |
by smlewis Mon, 2014-04-21 06:47 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
1,966 |
by Kazu Mon, 2020-05-18 10:52 |
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What is the different between dun08 and default dunbrack library? by SunH » Mon, 2010-11-08 06:14 |
1 |
1,962 |
by smlewis Mon, 2014-04-21 06:47 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
1 |
1,960 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
1 |
1,958 |
by smlewis Mon, 2014-04-21 06:47 |
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