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Rosetta 3 - General

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Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,982 by szcshr123
Fri, 2021-02-26 14:41
Normal topic Checkpoints in Rosetta
by exchhattu » Mon, 2009-10-19 17:47
2
3,163 by exchhattu
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
4,334 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Structure Prediction: Max Sequence Length?
by jcsaborio » Tue, 2009-07-14 12:10
2
4,135 by jcsaborio
Mon, 2014-04-21 06:47
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
2,482 by benhardy
Fri, 2021-05-07 07:22
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
1,364 by lanselibai
Thu, 2021-06-24 10:16
Normal topic Constraining a docking study
by jos » Tue, 2011-10-18 05:26
2
2,748 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
3,249 by petrikigor
Mon, 2014-04-21 06:47
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
4,972 by aneamtu
Thu, 2018-01-18 00:56
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
2,163 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
1,415 by hong wei
Thu, 2021-11-25 02:46
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
1,041 by brubin
Tue, 2022-12-20 13:26
Normal topic Using Relax to asses conformational space
by glapidoth11 » Sat, 2011-07-30 05:09
2
3,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Wed, 2009-08-12 08:57
2
2,987 by frichter
Mon, 2014-04-21 06:47
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
9,956 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Issue with Loop Analyzer Mover ouput
by abhi_pe_acharya » Mon, 2018-04-30 09:55
2
2,139 by abhi_pe_acharya
Mon, 2018-04-30 22:54
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
3,196 by lvtun
Mon, 2014-04-21 06:47
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
4,041 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26
2
2,821 by pachecoj
Wed, 2014-10-15 15:12
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,521 by jrcf
Fri, 2016-02-12 16:41
Normal topic reporting IteratedConvergence status
by sdh_h » Thu, 2016-08-04 10:05
2
2,616 by sdh_h
Thu, 2016-08-04 11:22
Normal topic PUBLICATION using Rosetta as a method
by phanvy » Thu, 2014-06-19 08:33
2
3,091 by phanvy
Sun, 2014-06-22 23:29
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14
2
3,046 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
4,029 by abiadak
Mon, 2014-04-21 06:47
Normal topic all-atom refinement with Relax application
by zwenthor » Mon, 2010-02-15 22:45
2
2,991 by zwenthor
Mon, 2014-04-21 06:47
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05
2
2,935 by straore
Fri, 2015-04-17 01:54
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
3,060 by jhbrown
Mon, 2014-04-21 06:47
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,805 by aaj
Mon, 2016-02-22 07:50
Normal topic activation of filters in rosetta3.0 or later
by exchhattu » Thu, 2009-12-03 17:52
2
2,879 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Cluster gdtmm vs. rmsd
by brspurri » Thu, 2012-04-19 08:19
2
4,036 by rmoretti
Mon, 2014-04-21 06:47
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48
2
3,935 by jrcf
Fri, 2015-10-16 10:57
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
1,939 by guowuchen
Wed, 2022-03-30 04:20
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
3,444 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Flag to not use PDB ligands
by matteoferla » Wed, 2019-08-21 10:14
2
2,010 by matteoferla
Wed, 2019-08-21 11:58
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
3,361 by jrcf
Tue, 2016-05-03 17:40
Normal topic JD3 w/ Silent file output crashing - Option filename not found
by aduffy33 » Mon, 2023-10-30 13:40
2
522 by aduffy33
Mon, 2023-10-30 15:35
Normal topic Interface energy vs binding energy
by Apiwat » Wed, 2014-02-05 00:47
2
6,411 by Apiwat
Sat, 2014-02-08 01:41
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
3,416 by vsjasion
Mon, 2014-04-21 06:47
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,847 by jarek
Mon, 2014-04-21 06:48
Normal topic Cannot create cst files from upl files
by road runner » Wed, 2015-11-11 22:07
2
2,863 by road runner
Tue, 2015-12-01 10:08
Normal topic Abinitio Structure Prediction - Sanity Test
by westleys » Tue, 2010-06-01 00:28
2
3,149 by westleys
Mon, 2014-04-21 06:47
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
3,352 by gw
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
3,176 by Anatol
Mon, 2014-04-21 06:47
Normal topic make fragments for a loop
by jarod » Mon, 2010-03-15 07:31
2
2,897 by jarod
Mon, 2014-04-21 06:47
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,592 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,607 by inder
Mon, 2014-04-21 06:47
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
5,423 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
4,404 by rmoretti
Wed, 2015-01-21 10:05
Normal topic rosetta compile
by MA » Wed, 2017-04-26 00:46
2
2,350 by MA
Thu, 2017-04-27 18:53
Normal topic Explanation of constraint functions?
by aloshbau » Mon, 2015-12-14 22:38
2
2,576 by aloshbau
Mon, 2015-12-14 23:30
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,976 by jalan
Thu, 2020-04-23 05:19
Normal topic Chain name being read as residue
by MarkusAurelius » Mon, 2021-03-22 11:19
2
1,482 by MarkusAurelius
Mon, 2021-03-29 09:06
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
1,048 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic Calculating SAP score using RosettaScripts
by varunmc99 » Fri, 2023-05-12 11:03
2
1,025 by varunmc99
Fri, 2023-05-12 11:49
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,813 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:41
2
3,034 by ctaylor
Mon, 2014-04-21 06:47
Normal topic How to allow rosetta to recognize the ASP and protonated ASP?
by Jeffrey_Chen » Mon, 2014-03-24 20:34
2
4,229 by Jeffrey_Chen
Tue, 2014-03-25 23:06
Normal topic Free FSC score for validating refinement
by ahmadkhalifa » Thu, 2018-05-10 05:53
2
2,542 by ahmadkhalifa
Fri, 2018-06-29 07:54
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,676 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
3,321 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53
2
3,067 by rmoretti
Thu, 2015-08-06 09:21
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
2,075 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,875 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
3,560 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,684 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,436 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,914 by kaue
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
4,603 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
1,316 by cryosky
Fri, 2021-09-17 22:04
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,527 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
2,403 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic intrensic disrodered proteins
by ac.research » Thu, 2019-04-04 07:20
1
1,623 by vmulligan
Mon, 2019-04-08 14:49
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
2,009 by smlewis
Mon, 2014-04-21 06:47
Normal topic RASREC full_run vs. test_run
by Lati » Wed, 2015-10-28 03:26
1
2,195 by Lati
Fri, 2015-11-20 03:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
1,994 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
708 by rmoretti
Thu, 2023-03-16 11:46
Normal topic build rosetta by cross-platform compiler
by jarod » Fri, 2010-05-07 21:49
1
2,062 by smlewis
Mon, 2014-04-21 06:47
Normal topic energy_based_clustering and silentfile option
by weiw26 » Wed, 2024-06-05 16:28
1
90 by rmoretti
Thu, 2024-06-06 08:11
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
2,318 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
2,239 by albumns
Mon, 2014-04-21 06:47
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,822 by smlewis
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
2,206 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
3,082 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,648 by smlewis
Thu, 2018-06-28 13:34
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,590 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,828 by smlewis
Mon, 2014-04-21 06:47
Normal topic hbnet
by mintseris » Mon, 2018-03-19 09:02
1
1,720 by rmoretti
Mon, 2018-03-19 09:08
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
3,427 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta Position constraint docking?
by libai2098 » Mon, 2011-05-09 01:08
1
2,344 by libai2098
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36
1
2,546 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can rosetta model cyclic peptide?
by Apiwat » Fri, 2014-02-07 02:08
1
2,682 by rmoretti
Tue, 2014-02-11 06:24
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
2,322 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,488 by rmoretti
Tue, 2019-07-09 15:59
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
800 by rmoretti
Tue, 2022-09-06 08:22
Normal topic Global Docking with output analysis RMS
by kwu030 » Fri, 2024-02-23 09:17
1
361 by rmoretti
Mon, 2024-02-26 08:24
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
2,187 by sid
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
2,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
3,397 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial homology modeling in Rosetta
by al614 » Mon, 2016-10-31 12:30
1
2,144 by rmoretti
Mon, 2016-11-14 15:12
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