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Is there any significant improvement of model generation in rosetta3.4 comparing to rosetta3.3? by jiongzhang » Fri, 2012-04-20 13:35 |
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2,530 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
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1,834 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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1,007 |
by almeida85 Mon, 2021-02-08 09:50 |
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Checkpoints in Rosetta by exchhattu » Mon, 2009-10-19 17:47 |
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2,597 |
by exchhattu Mon, 2014-04-21 06:47 |
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Protein Docking Error by ac.research » Thu, 2017-08-17 02:57 |
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1,889 |
by ac.research Fri, 2017-08-18 00:53 |
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Structure Prediction: Max Sequence Length? by jcsaborio » Tue, 2009-07-14 12:10 |
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3,547 |
by jcsaborio Mon, 2014-04-21 06:47 |
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Rosetta ab initio with disordered regions by smiruthi » Thu, 2011-12-15 14:37 |
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2,602 |
by smiruthi Mon, 2014-04-21 06:47 |
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constraints by lah435 » Sun, 2017-03-12 03:25 |
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1,949 |
by lah435 Mon, 2017-04-03 19:50 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
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1,514 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
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2,190 |
by dnasmith Mon, 2014-04-21 06:47 |
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Energy updates in Rosetta 3.3 by gipsonb » Tue, 2011-10-11 09:58 |
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2,342 |
by gipsonb Mon, 2014-04-21 06:47 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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2,563 |
by DanielK Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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6,223 |
by lanselibai Mon, 2014-09-22 08:13 |
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H3 modelling scoring function by aneamtu » Wed, 2017-12-27 23:10 |
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1,848 |
by aneamtu Mon, 2018-01-08 23:49 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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562 |
by e3lm Fri, 2022-05-06 16:10 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
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1,272 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
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994 |
by diasmarieli Fri, 2021-11-26 05:11 |
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rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
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2,645 |
by frits Mon, 2014-04-21 06:48 |
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Chi values for side chains when switching from centroid mode by MarkW » Fri, 2015-07-03 04:43 |
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2,316 |
by MarkW Fri, 2015-07-03 15:36 |
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ligand dock residue selection by Silice » Wed, 2009-08-12 08:57 |
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2,451 |
by frichter Mon, 2014-04-21 06:47 |
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SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
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2,325 |
by SenyorDrew Wed, 2016-04-06 10:52 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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1,275 |
by mxp Wed, 2020-07-08 23:25 |
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Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
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2,641 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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1,664 |
by orionshih Tue, 2018-05-01 21:16 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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998 |
by matteoferla Mon, 2021-07-12 02:23 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,767 |
by einew Mon, 2014-04-21 06:47 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,610 |
by phanvy Wed, 2014-10-15 21:41 |
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rama energy term and explicit zero by SergeyP » Sat, 2015-12-19 05:25 |
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2,456 |
by SergeyP Sun, 2015-12-20 01:44 |
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Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
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2,413 |
by jadolfbr Sun, 2016-12-11 10:53 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
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1,429 |
by duz Thu, 2021-04-01 09:34 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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1,634 |
by nleroy Fri, 2019-11-08 12:44 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
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2,117 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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1,408 |
by rmoretti Tue, 2021-02-09 13:45 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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232 |
by Liviu Copoiu Mon, 2022-10-31 16:03 |
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all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
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2,498 |
by zwenthor Mon, 2014-04-21 06:47 |
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relax with restraints by jtmacd » Mon, 2010-11-08 09:11 |
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2,489 |
by jtmacd Mon, 2014-04-21 06:47 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
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2,482 |
by aaj Mon, 2016-02-22 07:43 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
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2,275 |
by smlewis Sun, 2017-01-15 18:10 |
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Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
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2,651 |
by erin_cutts Mon, 2014-04-21 06:48 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
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1,582 |
by rmoretti Mon, 2018-08-20 11:51 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
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1,829 |
by smlewis Wed, 2019-12-04 13:07 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
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2,388 |
by exchhattu Mon, 2014-04-21 06:47 |
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Citing Rosetta3.0 by ctaylor » Fri, 2009-10-09 11:42 |
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4,577 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
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1,910 |
by smlewis Mon, 2014-04-21 06:47 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,133 |
by rmoretti Mon, 2014-04-21 06:47 |
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error running rosetta3.0 by aschoenr » Wed, 2009-06-10 13:57 |
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2,407 |
by jtmacd Mon, 2014-04-21 06:47 |
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Building Rosetta PROBLEM by nunesjulioc » Fri, 2010-02-26 06:03 |
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1,722 |
by smlewis Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
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2,402 |
by smlewis Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,258 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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1,767 |
by rmoretti Sun, 2016-02-21 06:38 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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1,681 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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1,118 |
by rmoretti Sat, 2019-03-30 12:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,052 |
by matteoferla Sat, 2020-06-20 03:56 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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1,012 |
by matteoferla Thu, 2021-06-03 08:24 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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425 |
by mb0261 Mon, 2022-09-26 07:50 |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
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2,427 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
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1,964 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
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2,269 |
by rmoretti Mon, 2014-04-21 06:47 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
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3,006 |
by rmoretti Mon, 2014-04-21 06:48 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
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1,931 |
by rmoretti Mon, 2016-09-05 09:39 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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1,829 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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2,566 |
by amelie Tue, 2014-09-30 14:29 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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1,286 |
by Loki01 Wed, 2017-12-13 05:27 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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1,215 |
by rmoretti Mon, 2018-10-08 11:20 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,020 |
by sheehajh Fri, 2020-02-21 12:41 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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403 |
by aneeqh Fri, 2022-09-02 13:36 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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1,872 |
by sid Mon, 2014-04-21 06:47 |
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RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
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2,490 |
by smlewis Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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1,866 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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1,689 |
by rmoretti Fri, 2015-07-03 13:51 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,206 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,130 |
by IAndre Mon, 2014-04-21 06:47 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
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2,001 |
by rmoretti Mon, 2014-12-15 02:37 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
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1,795 |
by rmoretti Thu, 2016-04-28 15:49 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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1,149 |
by connyyu Thu, 2019-04-18 03:26 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,029 |
by vmulligan Mon, 2020-06-29 13:09 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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805 |
by rmoretti Wed, 2021-06-23 02:17 |
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null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
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1,897 |
by fred Mon, 2014-04-21 06:47 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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1,885 |
by rmoretti Mon, 2014-04-21 06:48 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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1,320 |
by rmoretti Wed, 2018-11-21 14:14 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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427 |
by ajasja Mon, 2022-05-23 07:19 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,038 |
by rmoretti Mon, 2020-10-26 19:52 |
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Error in RMSD calculation when native sequence deviates by abdullah » Tue, 2009-11-10 08:56 |
1 |
2,314 |
by smlewis Mon, 2014-04-21 06:47 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
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1,960 |
by smlewis Mon, 2014-04-21 06:47 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
1 |
3,183 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems in installing Rosetta3 in Red Hat Linux by jjz2009 » Mon, 2009-08-24 19:16 |
1 |
1,895 |
by smlewis Mon, 2014-04-21 06:47 |
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Could the Relax step be used separately ? （solved） by wszjzhang » Tue, 2010-03-30 15:00 |
1 |
1,849 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
1,893 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
2,742 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
2,133 |
by smlewis Mon, 2014-04-21 06:47 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
1 |
1,724 |
by rmoretti Fri, 2016-04-08 08:43 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
1 |
3,321 |
by smlewis Tue, 2017-04-18 08:33 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
1 |
683 |
by lanselibai Wed, 2021-06-23 14:53 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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234 |
by rmoretti Tue, 2022-09-06 08:13 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
1 |
1,728 |
by smlewis Mon, 2014-04-21 06:47 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
1 |
1,812 |
by rmoretti Wed, 2015-02-18 09:19 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
1 |
1,556 |
by smlewis Wed, 2017-06-28 06:59 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,255 |
by rmoretti Mon, 2019-07-08 08:05 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
1 |
788 |
by zivben Sat, 2021-07-31 08:16 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
1 |
2,140 |
by smlewis Mon, 2014-04-21 06:47 |
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