You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
1 |
2,491 |
by achambe Wed, 2016-01-13 10:46 |
|
|
No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
2 |
3,356 |
by smlewis Thu, 2016-01-14 08:19 |
|
|
Error message: ArchiveManager spinning down by Lati » Sun, 2016-01-24 02:42 |
1 |
2,440 |
by smlewis Sun, 2016-01-24 03:24 |
|
|
change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
3 |
3,787 |
by SergeyP Thu, 2016-02-04 00:07 |
|
|
Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
7 |
6,867 |
by rmoretti Thu, 2016-02-04 09:29 |
|
|
Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
1 |
1,902 |
by jadolfbr Fri, 2016-02-05 15:32 |
|
|
Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,447 |
by jrcf Fri, 2016-02-12 16:41 |
|
|
Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,567 |
by aloshbau Sun, 2016-02-14 20:14 |
|
|
Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
1 |
2,122 |
by rmoretti Sun, 2016-02-21 06:38 |
|
|
filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,913 |
by aaj Mon, 2016-02-22 07:43 |
|
|
docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
2 |
2,736 |
by aaj Mon, 2016-02-22 07:50 |
|
|
hydroxyproline patching problem by aaj » Mon, 2016-02-22 07:33 |
2 |
2,998 |
by aaj Mon, 2016-02-29 04:45 |
|
|
Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
3 |
3,421 |
by rmoretti Mon, 2016-03-07 14:20 |
|
|
Why is it called Rosetta? by cossio » Sun, 2016-03-13 14:28 |
1 |
2,005 |
by smlewis Sun, 2016-03-13 15:25 |
|
|
InterfaceAnalyzer atom subset by Parker.deWaal » Sun, 2016-03-13 13:41 |
2 |
2,829 |
by rmoretti Mon, 2016-03-14 07:58 |
|
|
Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
7,964 |
by jrcf Wed, 2016-03-23 12:16 |
|
|
Error reading new residue .param file by mgrom92 » Tue, 2016-03-22 12:54 |
2 |
4,416 |
by mgrom92 Wed, 2016-03-23 16:45 |
|
|
Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
3,999 |
by smlewis Wed, 2016-03-30 09:52 |
|
|
segfault in membrane_abinitio2.mpi by siegert » Sat, 2014-06-14 15:56 |
1 |
2,223 |
by yarovoy Wed, 2016-03-30 12:37 |
|
|
SnugDock equivalent in newer Rosetta code by SenyorDrew » Tue, 2016-03-29 09:16 |
2 |
2,773 |
by SenyorDrew Wed, 2016-04-06 10:52 |
|
|
non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
1 |
2,098 |
by rmoretti Fri, 2016-04-08 08:43 |
|
|
Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,397 |
by smlewis Thu, 2016-04-21 16:00 |
|
|
Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2) by skovacs » Thu, 2012-05-10 20:10 |
18 |
17,485 |
by aaj Fri, 2016-04-22 15:20 |
|
|
Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,669 |
by saxen Mon, 2016-04-25 10:38 |
|
|
industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
5 |
5,248 |
by banshee Tue, 2016-04-26 00:47 |
|
|
Error during docking with proteins containing norleucine by aaj » Mon, 2016-04-25 15:04 |
1 |
1,901 |
by rmoretti Thu, 2016-04-28 14:47 |
|
|
Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
6 |
5,736 |
by rmoretti Thu, 2016-04-28 15:19 |
|
|
setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
1 |
2,140 |
by rmoretti Thu, 2016-04-28 15:49 |
|
|
RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
5 |
7,981 |
by rmoretti Thu, 2016-04-28 15:53 |
|
|
Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,803 |
by rmoretti Thu, 2016-04-28 15:57 |
|
|
Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
6 |
6,360 |
by rmoretti Thu, 2016-04-28 16:15 |
|
|
Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
1 |
2,522 |
by rmoretti Thu, 2016-04-28 16:25 |
|
|
Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
4 |
4,844 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
|
|
Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
2 |
3,277 |
by jrcf Tue, 2016-05-03 17:40 |
|
|
backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
2 |
2,624 |
by SergeyP Thu, 2016-05-05 02:07 |
|
|
Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
8 |
10,027 |
by rmoretti Mon, 2016-05-09 09:23 |
|
|
Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
0 |
1,364 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
|
|
-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
2 |
2,658 |
by Karol Thu, 2016-05-12 07:58 |
|
|
modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error by Karol » Wed, 2016-05-04 08:47 |
17 |
16,318 |
by smlewis Tue, 2016-05-17 08:06 |
|
|
Parametrisation problems by DmitriiN » Tue, 2016-05-31 09:37 |
2 |
2,503 |
by DmitriiN Wed, 2016-06-01 15:46 |
|
|
CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
3 |
3,490 |
by SenyorDrew Tue, 2016-06-14 06:43 |
|
|
Enumeration of Amino Acid identities by achambe » Wed, 2016-06-15 15:28 |
1 |
1,931 |
by rmoretti Wed, 2016-06-15 16:06 |
|
|
Score Differences between Ab Initio Scoring and Rescore by mmarlett » Wed, 2016-06-15 09:14 |
2 |
2,680 |
by mmarlett Thu, 2016-06-16 07:06 |
|
|
New parametrization problems by DmitriiN » Wed, 2016-06-08 05:09 |
25 |
20,899 |
by smlewis Tue, 2016-06-28 09:05 |
|
|
multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,892 |
by rmoretti Wed, 2016-06-29 10:20 |
|
|
Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
3 |
3,177 |
by smlewis Thu, 2016-06-30 08:44 |
|
|
Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
1,297 |
by Jhreed Fri, 2016-07-08 13:44 |
|
|
Histidine phosphorylation by a patch by felipet » Sat, 2016-07-09 06:51 |
2 |
3,077 |
by felipet Sat, 2016-07-09 09:50 |
|
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
4,140 |
by rmoretti Tue, 2016-07-12 08:18 |
|
|
Rosetta: Clustering by sskim » Sat, 2016-06-11 14:44 |
1 |
2,107 |
by rmoretti Tue, 2016-07-12 08:36 |
|
|
No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,918 |
by rmoretti Tue, 2016-07-12 08:40 |
|
|
Problems with parametrisation by DmitriiN » Fri, 2016-05-27 04:51 |
1 |
2,155 |
by rmoretti Tue, 2016-07-12 08:43 |
|
|
ssDNA (aptamer)/protein docking by JulienO » Fri, 2016-05-27 02:25 |
1 |
2,359 |
by rmoretti Tue, 2016-07-12 08:47 |
|
|
TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,827 |
by rmoretti Tue, 2016-07-12 08:48 |
|
|
pKa prediction using the Rosetta scoring function by das » Tue, 2016-06-21 06:42 |
1 |
1,942 |
by ssrb Tue, 2016-07-12 10:02 |
|
|
calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
6,100 |
by obdulia Wed, 2016-07-13 09:11 |
|
|
short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,707 |
by smlewis Wed, 2016-07-13 23:41 |
|
|
combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,538 |
by smlewis Fri, 2016-07-22 07:31 |
|
|
how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
3 |
3,421 |
by smlewis Fri, 2016-07-29 07:43 |
|
|
reporting IteratedConvergence status by sdh_h » Thu, 2016-08-04 10:05 |
2 |
2,548 |
by sdh_h Thu, 2016-08-04 11:22 |
|
|
[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
4 |
4,251 |
by msardejani Sun, 2016-08-07 17:49 |
|
|
Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,637 |
by SenyorDrew Thu, 2016-08-11 05:56 |
|
|
"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
1 |
2,249 |
by smlewis Thu, 2016-08-11 13:16 |
|
|
Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
7 |
6,562 |
by krdav Wed, 2016-08-17 12:57 |
|
|
Question about homology modelling by DmitriiN » Sun, 2016-08-21 13:44 |
3 |
3,708 |
by smlewis Mon, 2016-08-22 10:28 |
|
|
Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
1 |
1,876 |
by smlewis Mon, 2016-08-22 10:39 |
|
|
HBNetStapleInterface by sdh_h » Wed, 2016-08-24 03:30 |
1 |
1,767 |
by smlewis Wed, 2016-08-24 07:23 |
|
|
sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
3 |
3,352 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
|
|
Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,778 |
by Karol Mon, 2016-08-29 05:27 |
|
|
BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
5,083 |
by smlewis Tue, 2016-08-30 13:47 |
|
|
Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
1 |
1,827 |
by possu Tue, 2016-08-30 16:57 |
|
|
Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
3 |
16,494 |
by charlie.strauss Fri, 2016-09-02 10:08 |
|
|
dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,313 |
by rmoretti Mon, 2016-09-05 09:39 |
|
|
Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,858 |
by rmoretti Thu, 2016-09-08 07:56 |
|
|
restrain multiple portions of proteins with MinMover by Karol » Wed, 2016-09-07 08:29 |
4 |
4,887 |
by rmoretti Thu, 2016-09-08 10:56 |
|
|
symmetric design without symmetrizing the structure by sdh_h » Tue, 2016-09-13 05:49 |
1 |
2,051 |
by rmoretti Tue, 2016-09-13 07:41 |
|
|
Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
3,456 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
|
|
How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
2 |
2,619 |
by msardejani Wed, 2016-10-05 10:53 |
|
|
"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
2,315 |
by rmoretti Fri, 2016-10-14 15:46 |
|
|
Ligand Docking with Orphan GPCR by marsaa » Thu, 2016-10-13 07:45 |
1 |
2,387 |
by rmoretti Fri, 2016-10-14 16:43 |
|
|
DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
3 |
3,829 |
by rmoretti Mon, 2016-11-14 14:21 |
|
|
Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
2,103 |
by rmoretti Mon, 2016-11-14 14:26 |
|
|
Partial homology modeling in Rosetta by al614 » Mon, 2016-10-31 12:30 |
1 |
2,100 |
by rmoretti Mon, 2016-11-14 15:12 |
|
|
span and frags filefor multichain transmembrane protein by zhiguang » Wed, 2016-10-26 13:28 |
4 |
4,056 |
by zhiguang Tue, 2016-11-15 12:27 |
|
|
Calibur-linux binary or source code availability? by jasnyderjr » Sat, 2016-12-10 23:36 |
2 |
2,868 |
by jadolfbr Sun, 2016-12-11 10:53 |
|
|
Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
0 |
1,324 |
by SenyorDrew Tue, 2016-12-13 14:29 |
|
|
dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
6,162 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
|
|
rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
5,601 |
by Karol Thu, 2016-12-15 01:35 |
|
|
General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
3 |
3,235 |
by smlewis Tue, 2016-12-20 10:40 |
|
|
Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
12 |
10,138 |
by smlewis Thu, 2016-12-22 13:11 |
|
|
relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
3 |
3,126 |
by allan.ferrari Tue, 2017-01-03 05:02 |
|
|
distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,395 |
by allan.ferrari Tue, 2017-01-03 11:15 |
|
|
Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
7,351 |
by sk0319 Wed, 2017-01-11 10:52 |
|
|
Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
2 |
2,734 |
by smlewis Sun, 2017-01-15 18:10 |
|
|
ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
6,443 |
by smlewis Sun, 2017-01-15 18:14 |
|
|
Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
10 |
9,782 |
by rmoretti Thu, 2017-02-02 08:32 |
|
|
Robetta nstruct number by ac.research » Tue, 2017-01-31 14:27 |
1 |
1,858 |
by rmoretti Thu, 2017-02-02 08:52 |
|
|
Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
7 |
6,145 |
by sunhwan Mon, 2017-02-27 11:02 |
|
|
Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
4,197 |
by cannond Wed, 2017-03-01 08:05 |
|
|
[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,684 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
Log in to post new content in the forum.
