
You are here
Rosetta 3 - General
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views |
Last post![]() |
|
---|---|---|---|---|
talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
8 |
14,853 |
by rmoretti Mon, 2014-04-21 06:48 |
|
minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
2,613 |
by MRH Mon, 2014-04-21 06:48 |
|
Comparison between two fragment pickers by qlj » Mon, 2013-09-02 06:34 |
3 |
3,250 |
by rmoretti Mon, 2014-04-21 06:48 |
|
rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
1 |
2,729 |
by rmoretti Mon, 2014-04-21 06:48 |
|
ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
5,061 |
by Lindsay Mon, 2014-04-21 06:48 |
|
Basic help with Protein-DNA and Protein-Protein modeling and engineering by Robert Evans » Sat, 2013-08-17 12:21 |
2 |
3,406 |
by Robert Evans Mon, 2014-04-21 06:48 |
|
Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
4,517 |
by Ashafix Mon, 2014-04-21 06:48 |
|
Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,011 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
1 |
1,831 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
3 |
3,202 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
5 |
6,007 |
by smlewis Mon, 2014-04-21 06:48 |
|
loop modeling by MRH » Thu, 2013-08-22 23:19 |
3 |
3,648 |
by MRH Mon, 2014-04-21 06:48 |
|
How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
3 |
4,896 |
by rmoretti Mon, 2014-04-21 06:48 |
|
What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
3 |
2,951 |
by PaulaBanks Mon, 2014-04-21 06:48 |
|
mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,336 |
by jarek Mon, 2014-04-21 06:48 |
|
Unrecognized aa NO3 by JadAbbass » Sun, 2013-07-14 10:48 |
3 |
3,757 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
Rosetta Holes and Packstat scoring by nick.polizzi » Fri, 2013-08-02 09:06 |
1 |
3,401 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Ligand conformations file in docking by rosa » Fri, 2013-07-12 09:21 |
4 |
4,721 |
by rosa Mon, 2014-04-21 06:48 |
|
Rescoring regions of structures by erin_cutts » Mon, 2013-07-22 04:43 |
2 |
2,657 |
by erin_cutts Mon, 2014-04-21 06:48 |
|
best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
7 |
5,774 |
by rosa Mon, 2014-04-21 06:48 |
|
opt-E Reference energies by vijayan » Wed, 2013-08-07 07:35 |
1 |
1,882 |
by rmoretti Mon, 2014-04-21 06:48 |
|
dna_denovo by frits » Fri, 2013-07-12 06:12 |
3 |
3,309 |
by frits Mon, 2014-04-21 06:48 |
|
RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
8 |
6,597 |
by rmoretti Mon, 2014-04-21 06:48 |
|
acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
8,152 |
by rmoretti Mon, 2014-04-21 06:48 |
|
RosettaRemodel by berk » Wed, 2013-07-10 11:21 |
2 |
2,384 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
replace a short helix by berk » Wed, 2013-06-05 10:19 |
1 |
1,732 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
3,028 |
by ytao Mon, 2014-04-21 06:48 |
|
missing amino acid by berk » Fri, 2013-06-14 06:07 |
1 |
1,682 |
by smlewis Mon, 2014-04-21 06:48 |
|
rna_denovo and minize_rna by frits » Wed, 2013-07-10 00:22 |
2 |
2,653 |
by frits Mon, 2014-04-21 06:48 |
|
loop file by banshee » Tue, 2013-06-04 13:26 |
2 |
2,384 |
by banshee Mon, 2014-04-21 06:48 |
|
problems with terminal caps by omirus » Tue, 2013-06-25 08:55 |
26 |
25,141 |
by omirus Mon, 2014-04-21 06:48 |
|
Loop modelling, by berk » Sat, 2013-06-08 08:29 |
2 |
2,459 |
by berk Mon, 2014-04-21 06:48 |
|
score terms by qlj » Wed, 2013-07-03 08:00 |
3 |
3,792 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Helix at loop site by berk » Fri, 2013-05-31 07:04 |
1 |
1,953 |
by smlewis Mon, 2014-04-21 06:48 |
|
calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
5,200 |
by fukamitka Mon, 2014-04-21 06:48 |
|
rosettaremodel by berk » Fri, 2013-06-07 00:42 |
3 |
2,876 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
5 |
5,125 |
by MRH Mon, 2014-04-21 06:48 |
|
How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
11 |
10,680 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
1 |
2,538 |
by smlewis Mon, 2014-04-21 06:47 |
|
fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
11 |
8,828 |
by rmoretti Mon, 2014-04-21 06:47 |
|
membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
19 |
14,781 |
by pledor Mon, 2014-04-21 06:47 |
|
Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
7 |
7,843 |
by rmoretti Mon, 2014-04-21 06:47 |
|
fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
1 |
1,839 |
by smlewis Mon, 2014-04-21 06:47 |
|
protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
16 |
13,354 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
3 |
3,213 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
Which rosetta for antibody modelling? by oppopomoz » Wed, 2013-04-24 09:10 |
2 |
2,646 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
5 |
13,813 |
by nawsad Mon, 2014-04-21 06:47 |
|
pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
1 |
2,135 |
by smlewis Mon, 2014-04-21 06:47 |
|
prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
3 |
4,681 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Rosetta forcefield terms and interpretation by zigeuner » Sat, 2013-05-25 16:59 |
2 |
4,380 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
2 |
2,449 |
by smlewis Mon, 2014-04-21 06:47 |
|
Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
1,708 |
by rmoretti Mon, 2014-04-21 06:47 |
|
uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
6,838 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
3 |
3,332 |
by eunwook Mon, 2014-04-21 06:47 |
|
What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
6,409 |
by smlewis Mon, 2014-04-21 06:47 |
|
is there a preferred way to enforce an hydrogen bond ? by logandonaldson » Wed, 2013-03-20 13:14 |
2 |
2,426 |
by rmoretti Mon, 2014-04-21 06:47 |
|
ddG average energy by dave » Wed, 2013-04-03 03:36 |
1 |
2,179 |
by rmoretti Mon, 2014-04-21 06:47 |
|
ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
1 |
1,971 |
by smlewis Mon, 2014-04-21 06:47 |
|
kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
8 |
7,320 |
by smlewis Mon, 2014-04-21 06:47 |
|
-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
3 |
3,361 |
by tsjain Mon, 2014-04-21 06:47 |
|
create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
4,597 |
by smlewis Mon, 2014-04-21 06:47 |
|
Give diferent chain information for a single sequence (comparative modeling) by Martin Floor » Tue, 2013-04-02 08:59 |
4 |
4,085 |
by Martin Floor Mon, 2014-04-21 06:47 |
|
jd2 time out error by ytao » Mon, 2013-03-04 20:47 |
2 |
2,347 |
by ytao Mon, 2014-04-21 06:47 |
|
Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
3 |
3,097 |
by smlewis Mon, 2014-04-21 06:47 |
|
flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
9 |
10,324 |
by gsmurphy Mon, 2014-04-21 06:47 |
|
multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
3,857 |
by logandonaldson Mon, 2014-04-21 06:47 |
|
how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
3 |
14,200 |
by smlewis Mon, 2014-04-21 06:47 |
|
side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
7,773 |
by qlj Mon, 2014-04-21 06:47 |
|
Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
55 |
48,341 |
by bharat_46010 Mon, 2014-04-21 06:47 |
|
run:test_cycles by ramin » Sun, 2013-03-10 11:05 |
1 |
1,835 |
by smlewis Mon, 2014-04-21 06:47 |
|
cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
6,370 |
by ritacc18 Mon, 2014-04-21 06:47 |
|
Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
11 |
9,279 |
by rmoretti Mon, 2014-04-21 06:47 |
|
How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
3 |
2,808 |
by msun Mon, 2014-04-21 06:47 |
|
pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
10 |
7,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
Can I use the relax mode application for removing clashes in a membrane protein homology model? by doranhen » Thu, 2012-12-20 05:45 |
2 |
2,607 |
by doranhen Mon, 2014-04-21 06:47 |
|
memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
8,711 |
by smlewis Mon, 2014-04-21 06:47 |
|
Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
3 |
3,310 |
by smlewis Mon, 2014-04-21 06:47 |
|
fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,152 |
by doranhen Mon, 2014-04-21 06:47 |
|
How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
13 |
10,150 |
by rmoretti Mon, 2014-04-21 06:47 |
|
fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
13 |
11,120 |
by sabine Mon, 2014-04-21 06:47 |
|
nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
9,753 |
by dgront Mon, 2014-04-21 06:47 |
|
Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
5 |
5,226 |
by doranhen Mon, 2014-04-21 06:47 |
|
membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
5,328 |
by tevang Mon, 2014-04-21 06:47 |
|
Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
2 |
2,714 |
by kalabharath Mon, 2014-04-21 06:47 |
|
Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
2 |
2,886 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
2 |
2,733 |
by petrikigor Mon, 2014-04-21 06:47 |
|
Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,329 |
by coxford Mon, 2014-04-21 06:47 |
|
Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
5,688 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Symmetric Processing for evaluating side-chain of chi angle by qlj » Wed, 2012-10-10 04:08 |
2 |
2,601 |
by smlewis Mon, 2014-04-21 06:47 |
|
an old question by albumns » Sun, 2012-10-28 12:14 |
4 |
4,171 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
2 |
2,720 |
by khanhbinh Mon, 2014-04-21 06:47 |
|
match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
4,825 |
by rmoretti Mon, 2014-04-21 06:47 |
|
model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,597 |
by smlewis Mon, 2014-04-21 06:47 |
|
computer specifications by rlwoltz » Tue, 2012-10-09 16:11 |
4 |
5,360 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
6,057 |
by smlewis Mon, 2014-04-21 06:47 |
|
ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,058 |
by rmoretti Mon, 2014-04-21 06:47 |
|
AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,275 |
by rmoretti Mon, 2014-04-21 06:47 |
|
loop design by varma » Sun, 2012-11-04 21:25 |
2 |
3,458 |
by varma Mon, 2014-04-21 06:47 |
|
ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
2,688 |
by dave Mon, 2014-04-21 06:47 |
|
Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
26 |
21,229 |
by rmoretti Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
