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Rosetta 3 - General

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Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48 		8
 14,853 by rmoretti
Mon, 2014-04-21 06:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29 		2
 2,613 by MRH
Mon, 2014-04-21 06:48
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34 		3
 3,250 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25 		1
 2,729 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19 		3
 5,061 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Basic help with Protein-DNA and Protein-Protein modeling and engineering
by Robert Evans » Sat, 2013-08-17 12:21 		2
 3,406 by Robert Evans
Mon, 2014-04-21 06:48
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50 		3
 4,517 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01 		1
 3,011 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47 		1
 1,831 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio starts at the 27th amino acid
by JadAbbass » Thu, 2013-08-29 05:38 		3
 3,202 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08 		5
 6,007 by smlewis
Mon, 2014-04-21 06:48
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19 		3
 3,648 by MRH
Mon, 2014-04-21 06:48
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59 		3
 4,896 by rmoretti
Mon, 2014-04-21 06:48
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09 		3
 2,951 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24 		2
 3,336 by jarek
Mon, 2014-04-21 06:48
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48 		3
 3,757 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Rosetta Holes and Packstat scoring
by nick.polizzi » Fri, 2013-08-02 09:06 		1
 3,401 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21 		4
 4,721 by rosa
Mon, 2014-04-21 06:48
Normal topic Rescoring regions of structures
by erin_cutts » Mon, 2013-07-22 04:43 		2
 2,657 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35 		7
 5,774 by rosa
Mon, 2014-04-21 06:48
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35 		1
 1,882 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12 		3
 3,309 by frits
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13 		8
 6,597 by rmoretti
Mon, 2014-04-21 06:48
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53 		3
 8,152 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21 		2
 2,384 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic replace a short helix
by berk » Wed, 2013-06-05 10:19 		1
 1,732 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13 		2
 3,028 by ytao
Mon, 2014-04-21 06:48
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07 		1
 1,682 by smlewis
Mon, 2014-04-21 06:48
Normal topic rna_denovo and minize_rna
by frits » Wed, 2013-07-10 00:22 		2
 2,653 by frits
Mon, 2014-04-21 06:48
Normal topic loop file
by banshee » Tue, 2013-06-04 13:26 		2
 2,384 by banshee
Mon, 2014-04-21 06:48
Hot topic problems with terminal caps
by omirus » Tue, 2013-06-25 08:55 		26
 25,141 by omirus
Mon, 2014-04-21 06:48
Normal topic Loop modelling,
by berk » Sat, 2013-06-08 08:29 		2
 2,459 by berk
Mon, 2014-04-21 06:48
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00 		3
 3,792 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Helix at loop site
by berk » Fri, 2013-05-31 07:04 		1
 1,953 by smlewis
Mon, 2014-04-21 06:48
Normal topic calculated ddG_bind converges to zero
by fukamitka » Mon, 2013-06-24 20:32 		6
 5,200 by fukamitka
Mon, 2014-04-21 06:48
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42 		3
 2,876 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38 		5
 5,125 by MRH
Mon, 2014-04-21 06:48
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00 		11
 10,680 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56 		1
 2,538 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00 		11
 8,828 by rmoretti
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48 		19
 14,781 by pledor
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32 		7
 7,843 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33 		1
 1,839 by smlewis
Mon, 2014-04-21 06:47
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18 		16
 13,354 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to generate constraints of active sites from a pdb file of an enzyme
by Albert » Sun, 2013-05-26 20:07 		3
 3,213 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Which rosetta for antibody modelling?
by oppopomoz » Wed, 2013-04-24 09:10 		2
 2,646 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29 		5
 13,813 by nawsad
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59 		1
 2,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10 		3
 4,681 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59 		2
 4,380 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to prevent rotamers from being pruned from the interaction graph?
by msun » Wed, 2013-04-17 14:19 		2
 2,449 by smlewis
Mon, 2014-04-21 06:47
Normal topic Feedback for Loopmodeling module
by zharmad » Tue, 2013-05-14 03:22 		1
 1,708 by rmoretti
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45 		5
 6,838 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44 		3
 3,332 by eunwook
Mon, 2014-04-21 06:47
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19 		6
 6,409 by smlewis
Mon, 2014-04-21 06:47
Normal topic is there a preferred way to enforce an hydrogen bond ?
by logandonaldson » Wed, 2013-03-20 13:14 		2
 2,426 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddG average energy
by dave » Wed, 2013-04-03 03:36 		1
 2,179 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab initio folding part of a protein
by attesor » Wed, 2013-03-06 04:39 		1
 1,971 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52 		8
 7,320 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease
by tsjain » Tue, 2013-02-05 18:47 		3
 3,361 by tsjain
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23 		3
 4,597 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59 		4
 4,085 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic jd2 time out error
by ytao » Mon, 2013-03-04 20:47 		2
 2,347 by ytao
Mon, 2014-04-21 06:47
Normal topic Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles?
by nh_prt » Tue, 2013-03-26 12:22 		3
 3,097 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19 		9
 10,324 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16 		4
 3,857 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27 		3
 14,200 by smlewis
Mon, 2014-04-21 06:47
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40 		6
 7,773 by qlj
Mon, 2014-04-21 06:47
Hot topic Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 		55
 48,341 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05 		1
 1,835 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20 		5
 6,370 by ritacc18
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08 		11
 9,279 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26 		3
 2,808 by msun
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59 		10
 7,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I use the relax mode application for removing clashes in a membrane protein homology model?
by doranhen » Thu, 2012-12-20 05:45 		2
 2,607 by doranhen
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25 		8
 8,711 by smlewis
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12 		3
 3,310 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and HETATM
by doranhen » Mon, 2013-01-14 07:50 		2
 3,152 by doranhen
Mon, 2014-04-21 06:47
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55 		13
 10,150 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15 		13
 11,120 by sabine
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08 		5
 9,753 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44 		5
 5,226 by doranhen
Mon, 2014-04-21 06:47
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43 		6
 5,328 by tevang
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44 		2
 2,714 by kalabharath
Mon, 2014-04-21 06:47
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01 		2
 2,886 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25 		2
 2,733 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06 		0
 2,329 by coxford
Mon, 2014-04-21 06:47
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10 		5
 5,688 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Processing for evaluating side-chain of chi angle
by qlj » Wed, 2012-10-10 04:08 		2
 2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14 		4
 4,171 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19 		2
 2,720 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22 		5
 4,825 by rmoretti
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52 		1
 2,597 by smlewis
Mon, 2014-04-21 06:47
Normal topic computer specifications
by rlwoltz » Tue, 2012-10-09 16:11 		4
 5,360 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32 		6
 6,057 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38 		1
 2,058 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49 		1
 2,275 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loop design
by varma » Sun, 2012-11-04 21:25 		2
 3,458 by varma
Mon, 2014-04-21 06:47
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23 		2
 2,688 by dave
Mon, 2014-04-21 06:47
Hot topic Can't make NCAA's and D-aminoacids work
by jarek » Fri, 2012-10-26 09:10 		26
 21,229 by rmoretti
Mon, 2014-04-21 06:47
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