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Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
4,745 by jurkm
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,601 by abdullah
Mon, 2014-04-21 06:47
Normal topic max_nn
by anusmita_sahoo » Thu, 2010-03-11 02:21
1
1,871 by smlewis
Mon, 2014-04-21 06:47
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,143 by smlewis
Mon, 2014-04-21 06:47
Normal topic Meaning of a couple terms?
by aloshbau » Sun, 2016-02-07 16:48
2
2,284 by aloshbau
Sun, 2016-02-14 20:14
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
721 by Corvin
Wed, 2021-05-19 07:54
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,857 by rmoretti
Tue, 2014-07-01 12:07
Normal topic membrane ab initio error after montecarlo
by adva » Mon, 2012-12-24 01:43
6
5,693 by tevang
Mon, 2014-04-21 06:47
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,441 by coxford
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
15,849 by pledor
Mon, 2014-04-21 06:47
Normal topic Membrane folding - blastpgp error.
by arthuc01 » Sun, 2012-03-25 14:47
4
5,443 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
4,916 by arthuc01
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
3,920 by pardave
Mon, 2014-04-21 06:47
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
0
167 by almeida85
Thu, 2023-05-25 06:18
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
9,265 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
3,723 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
2,049 by yuvals
Mon, 2014-10-06 15:02
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
3,090 by smlewis
Sun, 2017-11-19 20:08
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,758 by lah435
Thu, 2015-02-12 09:16
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
307 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,747 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
1,029 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
5,015 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
2,314 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,800 by MRH
Mon, 2014-04-21 06:48
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
15,122 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,781 by vmulligan
Tue, 2019-03-26 11:30
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,814 by smlewis
Mon, 2014-04-21 06:48
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 12:58
12
974 by kwu030
Thu, 2023-05-18 08:31
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
6,421 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
2,353 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,853 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,747 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,982 by frichter
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
10,669 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
5,268 by jarod
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
10,338 by jurkm
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
4,557 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08
19
18,878 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
3,829 by matteoferla
Sat, 2017-08-05 07:18
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
7,347 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,512 by jkleman
Sat, 2018-04-14 10:55
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,776 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,639 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
3,280 by rmoretti
Thu, 2015-09-17 12:42
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
516 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
3,041 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
1,259 by jferrie
Mon, 2018-04-23 15:25
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,360 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,244 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,363 by rmoretti
Sat, 2015-09-05 12:10
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,349 by jkleman
Thu, 2020-01-16 11:05
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39
25
22,949 by Gaurav_kumar
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,381 by yuvals
Sat, 2014-06-21 02:17
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,671 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
9,759 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
552 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,720 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,658 by rmoretti
Tue, 2021-02-09 13:45
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
4,084 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
857 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,668 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,977 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
4,155 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,949 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
461 by rmoretti
Tue, 2022-09-06 08:22
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,704 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,895 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,940 by smlewis
Thu, 2016-04-21 16:00
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
985 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,542 by jarek
Mon, 2014-04-21 06:48
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,297 by smlewis
Fri, 2019-06-28 13:56
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
327 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
5,186 by rmoretti
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,209 by rmoretti
Fri, 2015-07-03 13:04
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
3,710 by franfdez
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,979 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
3,400 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,670 by rmoretti
Thu, 2016-09-08 07:56
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,781 by smlewis
Mon, 2014-04-21 06:47
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
18,776 by smlewis
Tue, 2016-06-28 09:05
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
2,121 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,729 by rmoretti
Tue, 2016-07-12 08:40
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
3,055 by smlewis
Thu, 2016-01-14 08:19
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
5,756 by robren
Mon, 2014-04-21 06:47
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,444 by rmoretti
Mon, 2014-06-16 08:23
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
571 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,304 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,885 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,086 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
4,040 by Victor
Fri, 2014-01-31 10:41
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
4,692 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
10,135 by dgront
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
2,023 by fred
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,535 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
605 by CameronJA
Mon, 2021-06-14 16:12
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
3,181 by scombs
Mon, 2014-04-21 06:47
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
600 by Antonia
Wed, 2021-06-16 12:30
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
309 by Proteinmechanic
Fri, 2022-09-30 21:23
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