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Rosetta 3 - General
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Topic / Topic starter |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
13 |
12,906 |
by ablakely7 Wed, 2019-09-11 15:33 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
0 |
836 |
by jeanramos Mon, 2020-07-13 00:56 |
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make fragments for a loop by jarod » Mon, 2010-03-15 07:31 |
2 |
2,850 |
by jarod Mon, 2014-04-21 06:47 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,635 |
by rmoretti Mon, 2019-08-26 15:01 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
2 |
2,192 |
by jalan Sun, 2020-04-12 08:01 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
991 |
by yinasun Fri, 2019-07-26 02:17 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
1,581 |
by rmoretti Mon, 2019-08-26 15:00 |
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make_fragment.pl Error! by Apiwat » Sat, 2014-02-15 13:35 |
12 |
14,432 |
by Apiwat Tue, 2014-03-11 09:42 |
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make_fragments by ctaylor » Mon, 2009-09-21 12:41 |
2 |
2,979 |
by ctaylor Mon, 2014-04-21 06:47 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,848 |
by sumukh21 Mon, 2014-04-21 06:47 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,618 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
5 |
4,751 |
by matteoferla Wed, 2021-09-29 01:58 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
1 |
2,267 |
by rmoretti Tue, 2014-06-10 11:34 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
4 |
4,135 |
by jtmacd Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
5,612 |
by rmoretti Mon, 2014-04-21 06:47 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
3 |
5,086 |
by jurkm Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,720 |
by abdullah Mon, 2014-04-21 06:47 |
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max_nn by anusmita_sahoo » Thu, 2010-03-11 02:21 |
1 |
2,044 |
by smlewis Mon, 2014-04-21 06:47 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
1 |
2,308 |
by smlewis Mon, 2014-04-21 06:47 |
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Meaning of a couple terms? by aloshbau » Sun, 2016-02-07 16:48 |
2 |
2,568 |
by aloshbau Sun, 2016-02-14 20:14 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
0 |
867 |
by Corvin Wed, 2021-05-19 07:54 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
1 |
2,032 |
by rmoretti Tue, 2014-07-01 12:07 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
6 |
6,138 |
by tevang Mon, 2014-04-21 06:47 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
0 |
2,580 |
by coxford Mon, 2014-04-21 06:47 |
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membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
19 |
17,373 |
by pledor Mon, 2014-04-21 06:47 |
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Membrane folding - blastpgp error. by arthuc01 » Sun, 2012-03-25 14:47 |
4 |
5,805 |
by arthuc01 Mon, 2014-04-21 06:47 |
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membrane modeling error! by wtscrystal » Wed, 2009-12-09 21:28 |
3 |
5,263 |
by arthuc01 Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
4 |
4,224 |
by pardave Mon, 2014-04-21 06:47 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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392 |
by almeida85 Thu, 2023-05-25 06:18 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
9,923 |
by smlewis Mon, 2014-04-21 06:47 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
4,347 |
by Jacky010 Tue, 2019-05-14 01:24 |
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Memory leak? Memory consumption rises quickly when using JD2 app(s) by yuvals » Mon, 2014-10-06 11:35 |
1 |
2,227 |
by yuvals Mon, 2014-10-06 15:02 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
1 |
3,442 |
by smlewis Sun, 2017-11-19 20:08 |
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metal_ions formal charge question by lah435 » Tue, 2015-02-03 09:35 |
2 |
3,013 |
by lah435 Thu, 2015-02-12 09:16 |
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Method for adding residues into PDB's w/ RosettaScripts. by Wexter300 » Wed, 2023-03-15 13:07 |
1 |
617 |
by rmoretti Thu, 2023-03-16 11:46 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
2,047 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
0 |
1,159 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
0 |
243 |
by rnogy Mon, 2023-11-06 17:06 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
5 |
5,538 |
by rmoretti Tue, 2015-05-05 14:31 |
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Minimizing across jumps by SenyorDrew » Thu, 2017-07-06 06:26 |
2 |
2,559 |
by SenyorDrew Thu, 2017-07-06 07:48 |
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minimum number of nstruct to build at 65% homolgy by MRH » Thu, 2013-08-22 07:29 |
2 |
3,055 |
by MRH Mon, 2014-04-21 06:48 |
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minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
13 |
16,262 |
by rmoretti Tue, 2014-11-11 13:56 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
1 |
2,045 |
by vmulligan Tue, 2019-03-26 11:30 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
1 |
2,003 |
by smlewis Mon, 2014-04-21 06:48 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
12 |
3,506 |
by kwu030 Thu, 2023-05-18 08:31 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
6 |
6,900 |
by smlewis Mon, 2014-04-21 06:47 |
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mode=release compile on a mac-pro , seg faults and bus errors by dnasmith » Thu, 2010-09-09 16:56 |
2 |
2,550 |
by dnasmith Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
1 |
2,022 |
by smlewis Mon, 2014-04-21 06:47 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,931 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling by hwillis » Wed, 2009-08-12 11:07 |
1 |
2,167 |
by frichter Mon, 2014-04-21 06:47 |
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Modeling circular permutation and domain insertion by bharat_46010 » Sun, 2011-04-10 19:54 |
13 |
11,514 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
6 |
5,888 |
by jarod Mon, 2014-04-21 06:47 |
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Modeling of a Multi-Domain Dimer by jurkm » Mon, 2011-08-29 01:39 |
10 |
11,145 |
by jurkm Mon, 2014-04-21 06:47 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
5 |
4,987 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling phosphate ion binding site in protein. by bharat_46010 » Tue, 2011-05-17 19:08 |
19 |
20,212 |
by rmoretti Mon, 2014-04-21 06:47 |
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Modeling protonated histidine by SenyorDrew » Mon, 2016-07-18 07:34 |
3 |
4,303 |
by matteoferla Sat, 2017-08-05 07:18 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
5 |
7,877 |
by rmoretti Fri, 2015-07-03 14:02 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
1 |
1,719 |
by jkleman Sat, 2018-04-14 10:55 |
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Modelling a loopless structure by jhbrown » Tue, 2011-11-22 11:39 |
2 |
3,002 |
by jhbrown Mon, 2014-04-21 06:47 |
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Modelling Sheets by monteirotorres » Thu, 2009-07-02 11:41 |
2 |
2,895 |
by monteirotorres Mon, 2014-04-21 06:47 |
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Models which are not recorded (Abinitio protocol) by allan.ferrari » Fri, 2015-08-28 13:39 |
3 |
3,579 |
by rmoretti Thu, 2015-09-17 12:42 |
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mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
1 |
728 |
by matteoferla Thu, 2022-06-09 14:41 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
3 |
3,431 |
by matteoferla Mon, 2018-02-26 02:05 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
0 |
1,403 |
by jferrie Mon, 2018-04-23 15:25 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
1 |
1,585 |
by dfcoelho Tue, 2020-02-04 07:45 |
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MoveMap file for backrub by jiyongpark.77 » Sat, 2009-07-18 03:53 |
1 |
2,442 |
by smlewis Mon, 2014-04-21 06:47 |
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Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
1 |
15,564 |
by rmoretti Sat, 2015-09-05 12:10 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
1,552 |
by jkleman Thu, 2020-01-16 11:05 |
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mpi / jd2 with AbinitioRelax and relax (3.2) by smg3d » Wed, 2011-02-09 10:39 |
25 |
24,845 |
by Gaurav_kumar Mon, 2014-04-21 06:47 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
1 |
5,594 |
by yuvals Sat, 2014-06-21 02:17 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
2,044 |
by rlwoltz Wed, 2021-03-24 22:36 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
9 |
10,562 |
by jadolfbr Mon, 2014-04-21 06:48 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
0 |
694 |
by hanzhiz Thu, 2021-12-16 09:32 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
2,010 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
2 |
1,951 |
by rmoretti Tue, 2021-02-09 13:45 |
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Multi-chain Modelling by Sandy » Sun, 2015-08-09 14:41 |
2 |
4,393 |
by rmoretti Tue, 2015-09-08 10:18 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
1 |
1,091 |
by matteoferla Mon, 2021-12-13 02:27 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
1 |
3,325 |
by rmoretti Wed, 2019-04-03 09:31 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
2 |
3,231 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
4 |
4,542 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
1 |
3,121 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
1 |
747 |
by rmoretti Tue, 2022-09-06 08:22 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,894 |
by rmoretti Wed, 2016-06-29 10:20 |
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Multiprocessing and running jobs on server using slurm by ahmadkhalifa » Mon, 2018-04-09 10:59 |
1 |
4,162 |
by rmoretti Tue, 2018-04-10 16:00 |
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Multiprocessor Execution by starone » Tue, 2016-04-19 20:06 |
3 |
4,409 |
by smlewis Thu, 2016-04-21 16:00 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
1,134 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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mutate residue at termini by jarek » Fri, 2013-09-13 09:24 |
2 |
3,772 |
by jarek Mon, 2014-04-21 06:48 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,497 |
by smlewis Fri, 2019-06-28 13:56 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
0 |
542 |
by SebastianBB Mon, 2022-11-21 08:33 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
6 |
5,577 |
by rmoretti Mon, 2014-04-21 06:47 |
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nbr_atom in ligand docking by phanvy » Fri, 2015-07-03 07:40 |
1 |
2,415 |
by rmoretti Fri, 2015-07-03 13:04 |
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NC atom type [Solved] by franfdez » Tue, 2012-02-07 16:05 |
3 |
3,983 |
by franfdez Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
0 |
2,089 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
1 |
3,043 |
by smlewis Mon, 2014-04-21 06:47 |
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Negative design: Can a filter call a mover in rosetta scripts? by jgans » Sat, 2012-09-08 21:28 |
2 |
3,641 |
by rmoretti Mon, 2014-04-21 06:47 |
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Negative fa_rep on ddG ? by LiorZ » Thu, 2016-09-08 07:44 |
1 |
1,861 |
by rmoretti Thu, 2016-09-08 07:56 |
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new installation on local computer problem by lqzhang » Mon, 2010-02-01 08:41 |
1 |
1,954 |
by smlewis Mon, 2014-04-21 06:47 |
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New parametrization problems by DmitriiN » Wed, 2016-06-08 05:09 |
25 |
20,964 |
by smlewis Tue, 2016-06-28 09:05 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
1 |
2,308 |
by smlewis Mon, 2014-04-21 06:47 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:08 |
1 |
1,921 |
by rmoretti Tue, 2016-07-12 08:40 |
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