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Rosetta 3 - General

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Normal topic Memory leak when PDB preparation
by Jacky010 » Mon, 2019-05-06 01:28
6
3,312 by Jacky010
Tue, 2019-05-14 01:24
Normal topic Memory leak? Memory consumption rises quickly when using JD2 app(s)
by yuvals » Mon, 2014-10-06 11:35
1
1,909 by yuvals
Mon, 2014-10-06 15:02
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,805 by smlewis
Sun, 2017-11-19 20:08
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35
2
2,570 by lah435
Thu, 2015-02-12 09:16
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
82 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Method for WebServer Fragment Generation
by Jacob_Verburgt » Tue, 2020-06-02 07:29
2
1,531 by Jacob_Verburgt
Tue, 2020-06-02 10:26
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
930 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,648 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Minimizing across jumps
by SenyorDrew » Thu, 2017-07-06 06:26
2
2,120 by SenyorDrew
Thu, 2017-07-06 07:48
Normal topic minimum number of nstruct to build at 65% homolgy
by MRH » Thu, 2013-08-22 07:29
2
2,611 by MRH
Mon, 2014-04-21 06:48
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
14,356 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Misleading error message
by renedominik » Tue, 2019-03-12 01:19
1
1,587 by vmulligan
Tue, 2019-03-26 11:30
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,681 by smlewis
Mon, 2014-04-21 06:48
Normal topic mitochondria protein modeling
by rlwoltz » Fri, 2012-10-26 14:32
6
6,042 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
2,191 by dnasmith
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
1,730 by smlewis
Mon, 2014-04-21 06:47
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,593 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
1,839 by frichter
Mon, 2014-04-21 06:47
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
9,998 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
4,878 by jarod
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
9,675 by jurkm
Mon, 2014-04-21 06:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
4,214 by smlewis
Mon, 2014-04-21 06:47
Hot topic Modeling phosphate ion binding site in protein.
by bharat_46010 » Tue, 2011-05-17 19:08
19
17,967 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Modeling protonated histidine
by SenyorDrew » Mon, 2016-07-18 07:34
3
3,535 by matteoferla
Sat, 2017-08-05 07:18
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
6,994 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,362 by jkleman
Sat, 2018-04-14 10:55
Normal topic Modelling a loopless structure
by jhbrown » Tue, 2011-11-22 11:39
2
2,599 by jhbrown
Mon, 2014-04-21 06:47
Normal topic Modelling Sheets
by monteirotorres » Thu, 2009-07-02 11:41
2
2,437 by monteirotorres
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
3,075 by rmoretti
Thu, 2015-09-17 12:42
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
359 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
2,727 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
1,158 by jferrie
Mon, 2018-04-23 15:25
Normal topic MotifGraft error: "Residue connection id changed when creating a new residue at seqpos"
by dfcoelho » Mon, 2020-02-03 11:09
1
1,202 by dfcoelho
Tue, 2020-02-04 07:45
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,220 by rmoretti
Sat, 2015-09-05 12:10
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,189 by jkleman
Thu, 2020-01-16 11:05
Hot topic mpi / jd2 with AbinitioRelax and relax (3.2)
by smg3d » Wed, 2011-02-09 10:39
25
21,706 by Gaurav_kumar
Mon, 2014-04-21 06:47
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,218 by yuvals
Sat, 2014-06-21 02:17
Normal topic MPI optimization on TACC stampede2 HPC
by rlwoltz » Tue, 2021-03-16 18:07
2
1,434 by rlwoltz
Wed, 2021-03-24 22:36
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
9,190 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
439 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic MSDMover error in RECON protocol
by yifeili1983 » Mon, 2019-04-01 00:44
2
1,520 by yifeili1983
Mon, 2019-04-15 22:34
Normal topic multi state protein design
by rohi » Fri, 2020-09-04 08:14
2
1,413 by rmoretti
Tue, 2021-02-09 13:45
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,838 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
696 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Multi-state design with the error "unable to locate database file"
by yifeili1983 » Sun, 2019-03-31 18:30
1
1,476 by rmoretti
Wed, 2019-04-03 09:31
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,786 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
3,851 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,825 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
273 by rmoretti
Tue, 2022-09-06 08:22
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,570 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,658 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,659 by smlewis
Thu, 2016-04-21 16:00
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
882 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic mutate residue at termini
by jarek » Fri, 2013-09-13 09:24
2
3,333 by jarek
Mon, 2014-04-21 06:48
Normal topic Mutations are ignored (fixbb) when using -auto_setup_metals option
by hdelrisco » Wed, 2019-06-19 15:43
1
1,132 by smlewis
Fri, 2019-06-28 13:56
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
194 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
4,850 by rmoretti
Mon, 2014-04-21 06:47
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40
1
2,047 by rmoretti
Fri, 2015-07-03 13:04
Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
3,475 by franfdez
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,890 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,744 by smlewis
Mon, 2014-04-21 06:47
Normal topic Negative design: Can a filter call a mover in rosetta scripts?
by jgans » Sat, 2012-09-08 21:28
2
3,205 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Negative fa_rep on ddG ?
by LiorZ » Thu, 2016-09-08 07:44
1
1,532 by rmoretti
Thu, 2016-09-08 07:56
Normal topic new installation on local computer problem
by lqzhang » Mon, 2010-02-01 08:41
1
1,662 by smlewis
Mon, 2014-04-21 06:47
Hot topic New parametrization problems
by DmitriiN » Wed, 2016-06-08 05:09
25
17,343 by smlewis
Tue, 2016-06-28 09:05
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,982 by smlewis
Mon, 2014-04-21 06:47
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:08
1
1,587 by rmoretti
Tue, 2016-07-12 08:40
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
2,837 by smlewis
Thu, 2016-01-14 08:19
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
5,397 by robren
Mon, 2014-04-21 06:47
Normal topic no template pdb provided for alignment
by HZHANG020 » Sat, 2014-06-14 06:27
1
2,297 by rmoretti
Mon, 2014-06-16 08:23
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
213 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic NOE constraints with Rosetta 3.1
by mpiuzzi » Wed, 2010-02-24 02:40
3
3,095 by mpiuzzi
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,729 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,961 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
3,759 by Victor
Fri, 2014-01-31 10:41
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
4,053 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
9,744 by dgront
Mon, 2014-04-21 06:47
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,898 by fred
Mon, 2014-04-21 06:47
Normal topic Number of conformations needed
by JadAbbass » Sun, 2014-02-16 13:21
2
2,340 by JadAbbass
Tue, 2014-02-18 07:27
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
512 by CameronJA
Mon, 2021-06-14 16:12
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
2,971 by scombs
Mon, 2014-04-21 06:47
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
511 by Antonia
Wed, 2021-06-16 12:30
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
182 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Only 430 models are generated for membrane prediction
by justin » Wed, 2010-01-06 00:04
3
3,076 by smlewis
Mon, 2014-04-21 06:47
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
922 by rmoretti
Tue, 2021-04-13 06:42
Normal topic opt-E Reference energies
by vijayan » Wed, 2013-08-07 07:35
1
1,879 by rmoretti
Mon, 2014-04-21 06:48
Normal topic optH flag makes hydrogen bond energy scores worse...
by tsjain » Fri, 2012-07-13 14:04
6
5,930 by smlewis
Mon, 2014-04-21 06:47
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
1,851 by rmoretti
Mon, 2017-05-15 09:03
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
640 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
458 by jgustat
Fri, 2022-07-01 13:26
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
1,898 by rmoretti
Mon, 2015-05-25 11:07
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
4,272 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
5,898 by rmoretti
Mon, 2014-04-21 06:48
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Hot topic packstat in InterfaceAnalyzer
by Anonymous » Mon, 2012-08-20 03:19
22
16,424 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,404 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,185 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Paper about Plexpepdock
by phanvy » Wed, 2014-06-18 06:29
1
1,733 by nawsad
Fri, 2014-06-20 03:00
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
3,117 by smlewis
Mon, 2014-04-21 06:47
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