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Rosetta 3 - General
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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3,415 |
by smlewis Mon, 2014-04-21 06:47 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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6,690 |
by smlewis Mon, 2014-04-21 06:47 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
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4,512 |
by jwillis Sat, 2015-02-07 20:40 |
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How to transform a pose from symmetric into non-symmetric? by msardejani » Tue, 2016-10-04 16:55 |
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2,619 |
by msardejani Wed, 2016-10-05 10:53 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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8,056 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
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2,776 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
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2,470 |
by matteoferla Thu, 2020-05-14 07:01 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,575 |
by rmoretti Thu, 2018-02-22 09:29 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,476 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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5,074 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
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2,167 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
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4,485 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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1,856 |
by matteoferla Fri, 2021-08-20 08:37 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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451 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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How to score the crystal structure? by vsjasion » Fri, 2011-11-18 15:49 |
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2,432 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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9,845 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to run docking in rosetta with small molecule by ajaniharesh » Tue, 2012-02-28 03:58 |
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3,950 |
by smlewis Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
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3,111 |
by Anatol Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,699 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
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14,499 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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3,079 |
by smlewis Mon, 2014-04-21 06:47 |
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How to recover out files when run crashs by samuelrpita » Tue, 2015-07-28 12:54 |
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3,046 |
by samuelrpita Thu, 2015-08-06 14:23 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
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3,008 |
by rmoretti Mon, 2017-08-28 09:32 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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11,913 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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1,027 |
by lanselibai Wed, 2021-06-23 14:53 |
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How to prevent rotamers from being pruned from the interaction graph? by msun » Wed, 2013-04-17 14:19 |
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2,884 |
by smlewis Mon, 2014-04-21 06:47 |
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How to prepare the pdblist file for docking_ensmble in Rosetta3.4 by sunlufinal » Mon, 2015-06-01 19:27 |
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2,803 |
by rmoretti Fri, 2015-07-03 12:58 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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956 |
by Danielsebas Tue, 2019-09-24 05:03 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
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4,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
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6,344 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to obtain alignment file for comparative modeling under Rosetta 3.1? by lennylv » Tue, 2010-05-25 01:29 |
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17,473 |
by sabine Mon, 2014-04-21 06:47 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
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2,875 |
by smlewis Mon, 2014-04-21 06:47 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
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5,411 |
by pholland Mon, 2014-04-21 06:47 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
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2,504 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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How to make Rosetta's sampling more aggresive ? by jiongzhang » Mon, 2012-03-12 11:04 |
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2,253 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to make benchmark? by albumns » Wed, 2012-04-04 05:23 |
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29,915 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
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4,654 |
by smlewis Wed, 2017-11-08 12:08 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
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15,104 |
by smlewis Mon, 2014-04-21 06:47 |
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how to keep native structure when do loop modeling by zlni » Sun, 2009-05-03 10:12 |
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4,287 |
by zlni Mon, 2014-04-21 06:47 |
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how to keep modeling ignored ERROR? by eunwook » Sat, 2013-04-27 05:44 |
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3,936 |
by eunwook Mon, 2014-04-21 06:47 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,727 |
by rmoretti Tue, 2015-07-14 15:27 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
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4,314 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
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5,520 |
by smlewis Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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3,235 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
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3,942 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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9,336 |
by smlewis Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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3,244 |
by smlewis Mon, 2014-04-21 06:47 |
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how to identify selected interface residues by vijayaraj81 » Mon, 2014-03-31 01:40 |
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4,462 |
by rmoretti Tue, 2014-04-01 08:12 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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1,652 |
by rmoretti Mon, 2023-02-20 16:07 |
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How to get the RMSD between two .pdb structures? by cossio » Wed, 2014-12-03 05:33 |
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3,516 |
by rmoretti Wed, 2014-12-03 18:52 |
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How to get the GDT_TS? by JadAbbass » Thu, 2013-09-05 11:59 |
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5,615 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to get reliable results for carbohydrate docking? by albumns » Sun, 2010-09-05 23:12 |
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4,918 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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9,252 |
by arthuc01 Mon, 2014-04-21 06:47 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,531 |
by rmoretti Wed, 2019-09-18 10:49 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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369 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
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How to generate symmdef file for translational symmetry only? by pitmand » Thu, 2015-05-14 11:34 |
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3,144 |
by pitmand Tue, 2015-05-26 12:20 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
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3,259 |
by zhisheng Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,778 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,494 |
by Anonymous Mon, 2014-04-21 06:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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15,684 |
by nawsad Mon, 2014-04-21 06:47 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,627 |
by ac.research Sat, 2017-11-18 06:54 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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828 |
by whiteqiu Mon, 2021-03-01 18:32 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,645 |
by smlewis Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
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4,765 |
by smlewis Mon, 2014-04-21 06:47 |
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how to do ensemble docking using rosetta3.1 by lqzhang » Mon, 2010-01-11 10:31 |
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2,197 |
by sid Mon, 2014-04-21 06:47 |
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how to do cluster after low resolution protein-protein docking? by albumns » Sat, 2010-11-27 01:17 |
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4,485 |
by albumns Mon, 2014-04-21 06:47 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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12,484 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,442 |
by rmoretti Tue, 2019-07-09 15:59 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,682 |
by rmoretti Tue, 2019-07-09 15:48 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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10,628 |
by rmoretti Tue, 2019-07-09 12:50 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,211 |
by smlewis Mon, 2014-04-21 06:47 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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12,691 |
by Lindsay Mon, 2014-04-21 06:48 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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1,050 |
by Anpu Thu, 2018-09-27 23:36 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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7,136 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,887 |
by rmoretti Tue, 2019-07-09 12:31 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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10,417 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to create a rotamer set that includes all possible rotamers of all possible amino acids by AyushGoyal » Thu, 2014-11-06 10:37 |
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2,465 |
by smlewis Fri, 2014-11-07 12:03 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
0 |
850 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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How to convert fragments to PDB format? by JadAbbass » Wed, 2015-08-19 04:05 |
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2,222 |
by rmoretti Wed, 2015-09-02 12:48 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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6,490 |
by smlewis Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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11,225 |
by tianbu Mon, 2014-02-17 03:36 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,506 |
by albumns Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
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4,626 |
by zaldini Wed, 2015-01-07 20:35 |
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How to allow rosetta to recognize the ASP and protonated ASP? by Jeffrey_Chen » Mon, 2014-03-24 20:34 |
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4,084 |
by Jeffrey_Chen Tue, 2014-03-25 23:06 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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1,098 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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497 |
by mb0261 Thu, 2022-06-30 10:48 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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2,383 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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3,112 |
by smlewis Mon, 2014-04-21 06:47 |
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How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)? by lanselibai » Thu, 2014-12-04 13:16 |
4 |
6,378 |
by lanselibai Fri, 2014-12-12 10:27 |
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how same random seeds can be used in rosetta for mpi run. by exchhattu » Wed, 2009-10-28 22:09 |
1 |
2,806 |
by smlewis Mon, 2014-04-21 06:47 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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913 |
by haom Tue, 2020-09-01 18:50 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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2,141 |
by rmoretti Wed, 2015-02-18 09:19 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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364 |
by JasonIsaac Tue, 2023-05-02 03:39 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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1,455 |
by patcD Wed, 2021-09-01 06:54 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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6,961 |
by Anonymous Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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10,006 |
by brspurri Mon, 2014-04-21 06:47 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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2,095 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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3,387 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
6 |
13,776 |
by rmoretti Mon, 2014-04-21 06:47 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
1 |
2,215 |
by jkleman Tue, 2018-07-31 13:19 |
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