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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Problems compiling tests
by molon » Wed, 2009-09-30 07:33
2
2,681 by molon
Mon, 2014-04-21 06:47
Normal topic General protein-protein docking when no info. on structure is availble
by jasnyderjr » Fri, 2016-12-09 04:55
3
2,689 by smlewis
Tue, 2016-12-20 10:40
Normal topic ddG backbone movement
by dave » Wed, 2012-10-03 03:23
2
2,690 by dave
Mon, 2014-04-21 06:47
Normal topic protein ligand docking
by patrickchirdon » Sun, 2018-12-30 15:07
4
2,697 by smlewis
Mon, 2018-12-31 08:58
Normal topic redesign a enzyme by fixing the active site
by Lindsay » Wed, 2012-03-07 08:23
2
2,700 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Specifying sidechain NOE restraints in Relax!
by kalabharath » Mon, 2012-12-10 16:44
2
2,716 by kalabharath
Mon, 2014-04-21 06:47
Normal topic rosetta run error
by isengupta13 » Thu, 2010-06-03 19:00
2
2,716 by aminzia
Fri, 2019-07-26 13:14
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
2,725 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,731 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Local sequence-structure compatability" in "design of ideal protein structures"
by petrikigor » Sun, 2012-12-02 09:25
2
2,734 by petrikigor
Mon, 2014-04-21 06:47
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25
2
2,739 by phanvy
Wed, 2014-12-10 00:17
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
2,739 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
2,742 by Lindsay
Mon, 2014-04-21 06:47
Normal topic How to remove clashes in peptide bonds and proline residue?
by Anatol » Fri, 2012-08-31 09:26
2
2,745 by Anatol
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,746 by smlewis
Mon, 2014-04-21 06:47
Normal topic Creation of core.* file in current running directory
by alejandro » Tue, 2011-12-06 06:19
2
2,753 by alejandro
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
2,756 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Ca-RMSD
by jrcf » Mon, 2016-02-29 16:39
2
2,759 by jrcf
Tue, 2016-05-03 17:40
Normal topic Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round)
by ahmadkhalifa » Wed, 2018-05-23 09:51
2
2,762 by rmoretti
Thu, 2018-06-28 14:09
Normal topic I can't find the workflow about modeling disordered regsion using rosetta?
by lihowe » Thu, 2011-12-29 03:45
2
2,764 by wangyr
Mon, 2014-04-21 06:47
Normal topic fragment picking with 100% sequence identity
by nawsad » Thu, 2013-12-05 07:12
1
2,764 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,766 by smlewis
Mon, 2014-04-21 06:47
Normal topic No structure mods allowed during scoring! error
by jadolfbr » Wed, 2013-12-04 14:06
2
2,773 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Comparative Modeling Tutorial Script not working
by Srinivas23 » Thu, 2017-09-21 12:00
4
2,774 by Srinivas23
Tue, 2017-10-24 10:58
Normal topic help with perturbation docking please
by einew » Fri, 2011-03-25 16:16
2
2,774 by einew
Mon, 2014-04-21 06:47
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
2,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
2,787 by pledor
Mon, 2014-04-21 06:47
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
2,790 by smlewis
Mon, 2014-04-21 06:47
Normal topic Multigraft
by bo » Tue, 2013-12-24 18:06
2
2,791 by Sergey Menis
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,793 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
2,800 by ndousis
Mon, 2014-04-21 06:47
Normal topic generate full atom coordinates with abinitio rosetta structure prediction
by anusmita_sahoo » Tue, 2010-03-30 00:11
2
2,803 by Trentage
Mon, 2014-04-21 06:47
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,805 by rmoretti
Fri, 2015-07-03 13:24
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
2,811 by rmoretti
Fri, 2018-08-03 11:39
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
2,814 by msun
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
2,819 by smlewis
Tue, 2014-12-23 13:58
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,820 by smlewis
Sun, 2017-11-19 20:08
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,826 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Design Stalling
by Jhreed » Sun, 2016-03-06 14:38
3
2,828 by rmoretti
Mon, 2016-03-07 14:20
Normal topic Multiple jobs for homology modeling
by justin » Fri, 2011-06-24 08:03
1
2,829 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
2,832 by aaxx
Wed, 2019-11-06 01:44
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
2,838 by ssrb
Tue, 2018-03-06 14:15
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
2,839 by justin
Mon, 2014-04-21 06:47
Normal topic No RMS and IRMS values in protein/nucleic acid docking
by rbeier1 » Wed, 2016-01-13 12:41
2
2,840 by smlewis
Thu, 2016-01-14 08:19
Normal topic symmetric docking application rosetta3.2: the docking_local_refine flag
by doranhen » Sun, 2012-05-06 02:20
2
2,842 by doranhen
Mon, 2014-04-21 06:47
Normal topic Problems in Loop Modeling
by jklett » Mon, 2009-10-19 07:26
2
2,845 by jklett
Mon, 2014-04-21 06:47
Normal topic How to set the cyana format of distance restraint in rosetta?
by zhisheng » Mon, 2011-04-25 02:21
1
2,847 by smlewis
Mon, 2014-04-21 06:47
Normal topic Iterative local rebuilding vs automated structure refinement
by ahmadkhalifa » Fri, 2018-09-14 07:44
4
2,850 by rmoretti
Wed, 2018-11-21 14:11
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
2,855 by ela
Thu, 2018-08-09 08:04
Normal topic Rosetta remodel on intel Xeon Phi
by pablogalazdavison » Wed, 2016-09-14 15:35
3
2,856 by pablogalazdavison
Thu, 2016-09-15 16:36
Normal topic Abinitio Video
by ac.research » Tue, 2017-09-12 04:00
3
2,859 by ac.research
Sun, 2017-09-24 11:25
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
2,873 by smlewis
Fri, 2016-07-29 07:43
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
2,877 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic relax NOT CONVERGED
by albumns » Thu, 2010-06-24 21:25
3
2,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
2,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic keep crystal structure hydrogens
by gw » Wed, 2011-07-20 03:54
2
2,887 by gw
Mon, 2014-04-21 06:47
Normal topic Residue variant types and fragments
by jadolfbr » Mon, 2013-01-21 09:01
2
2,887 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Denovo density corrupted silent file
by ahmadkhalifa » Mon, 2018-04-23 07:30
4
2,890 by ahmadkhalifa
Thu, 2018-04-26 09:11
Normal topic How to generate score file for loop refinement or modelling?
by zhisheng » Fri, 2011-12-09 05:15
2
2,907 by zhisheng
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,908 by smlewis
Mon, 2014-04-21 06:47
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,916 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Structure prediction based on template -> Documentation comparative modeling of protein structures
by maxebert » Sun, 2011-03-20 01:15
1
2,921 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to use backrub in rosetta3.1
by lqzhang » Mon, 2010-01-11 14:43
3
2,922 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using mode=profile
by Biokhar » Fri, 2012-07-06 00:29
2
2,923 by scombs
Mon, 2014-04-21 06:47
Normal topic How to insert a TER line between docking partners
by devroop » Sun, 2012-07-29 13:48
1
2,926 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about scoring silent output files and their contents
by burkheadlab » Wed, 2011-07-27 16:28
2
2,928 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rama vs p_aa_pp vs ref score terms
by jharamesh » Thu, 2015-12-03 14:24
1
2,928 by rmoretti
Thu, 2015-12-03 15:14
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
2,938 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
2,939 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic -fake_native Error - not found in command line of rosetta 3.2.1
by vsjasion » Wed, 2011-10-05 12:01
2
2,942 by vsjasion
Mon, 2014-04-21 06:47
Normal topic CDR Cluster Constrained Relax Equivalent
by SenyorDrew » Wed, 2016-04-27 08:04
3
2,952 by SenyorDrew
Tue, 2016-06-14 06:43
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
2,952 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic Loop Modeling
by ctaylor » Fri, 2009-12-18 11:42
3
2,955 by ctaylor
Mon, 2014-04-21 06:47
Normal topic # decoys of silent
by fred » Wed, 2014-04-02 06:00
3
2,962 by fred
Fri, 2014-04-04 11:34
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
2,964 by smlewis
Mon, 2014-04-21 06:47
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
2,966 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
2,977 by jrcf
Fri, 2016-02-12 16:41
Normal topic Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved]
by franfdez » Sat, 2012-01-28 11:39
1
2,977 by franfdez
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
2,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
2,983 by scombs
Mon, 2014-04-21 06:47
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
2,989 by rmoretti
Mon, 2014-09-29 13:45
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,993 by smlewis
Mon, 2014-04-21 06:47
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
3,000 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Installing Rosetta Abinitio make_fragments.pl
by ctaylor » Thu, 2009-09-17 09:20
2
3,001 by ctaylor
Mon, 2014-04-21 06:47
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
3,008 by rmoretti
Sat, 2017-12-16 12:19
Normal topic Re: Basic python scripts for File Manipulation
by bharat_46010 » Mon, 2011-03-14 19:44
1
3,010 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
3,013 by rmoretti
Mon, 2014-04-21 06:48
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
3,014 by rmoretti
Mon, 2014-04-21 06:48
Normal topic [dev] Using h-bonding values in new energy term
by ipetrik_ambry » Wed, 2017-03-01 11:33
4
3,019 by ipetrik_ambry
Thu, 2017-03-02 15:35
Normal topic AnchoredPDBcreator
by spraha » Wed, 2012-03-14 23:34
3
3,021 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
3,022 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic How to use Rosetta 3.1 to model the structure of an antibody?
by sylvia » Mon, 2009-10-26 14:06
2
3,027 by vanita
Mon, 2014-04-21 06:47
Normal topic Loop modeling FLAGS
by jklett » Fri, 2009-12-04 02:45
3
3,031 by jklett
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
3,033 by ytao
Mon, 2014-04-21 06:48
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
3,043 by smlewis
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
3,047 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Question about run FLEXPEPDOCK with 3 chain
by phanvy » Wed, 2014-07-02 08:46
3
3,056 by phanvy
Wed, 2014-07-02 23:32
Normal topic Unknow atom_name: LYS 1HZ in enzdes after match
by petrikigor » Fri, 2012-10-19 09:35
1
3,056 by rmoretti
Mon, 2014-04-21 06:47
Normal topic a question about protein-ligand docking in generating 1SW2 conformers
by Ryhon Wang » Wed, 2014-05-28 22:27
2
3,064 by rmoretti
Tue, 2014-06-03 11:45
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
3,065 by rmoretti
Mon, 2018-01-15 15:24
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