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Rosetta 3 - General
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Problems compiling tests by molon » Wed, 2009-09-30 07:33 |
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2,681 |
by molon Mon, 2014-04-21 06:47 |
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General protein-protein docking when no info. on structure is availble by jasnyderjr » Fri, 2016-12-09 04:55 |
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2,689 |
by smlewis Tue, 2016-12-20 10:40 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
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2,690 |
by dave Mon, 2014-04-21 06:47 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
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2,697 |
by smlewis Mon, 2018-12-31 08:58 |
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redesign a enzyme by fixing the active site by Lindsay » Wed, 2012-03-07 08:23 |
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2,700 |
by Lindsay Mon, 2014-04-21 06:47 |
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Specifying sidechain NOE restraints in Relax! by kalabharath » Mon, 2012-12-10 16:44 |
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2,716 |
by kalabharath Mon, 2014-04-21 06:47 |
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
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2,716 |
by aminzia Fri, 2019-07-26 13:14 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
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2,725 |
by khanhbinh Mon, 2014-04-21 06:47 |
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rosettautil module not imported cleanly by python scripts by franfdez » Tue, 2013-08-27 01:25 |
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2,731 |
by rmoretti Mon, 2014-04-21 06:48 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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2,734 |
by petrikigor Mon, 2014-04-21 06:47 |
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Fragment picker by phanvy » Mon, 2014-12-08 04:25 |
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2,739 |
by phanvy Wed, 2014-12-10 00:17 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
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2,739 |
by matteoferla Mon, 2018-02-26 02:05 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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2,742 |
by Lindsay Mon, 2014-04-21 06:47 |
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How to remove clashes in peptide bonds and proline residue? by Anatol » Fri, 2012-08-31 09:26 |
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2,745 |
by Anatol Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
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2,746 |
by smlewis Mon, 2014-04-21 06:47 |
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Creation of core.* file in current running directory by alejandro » Tue, 2011-12-06 06:19 |
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2,753 |
by alejandro Mon, 2014-04-21 06:47 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
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2,756 |
by Anonymous Mon, 2014-04-21 06:47 |
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Ca-RMSD by jrcf » Mon, 2016-02-29 16:39 |
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2,759 |
by jrcf Tue, 2016-05-03 17:40 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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2,762 |
by rmoretti Thu, 2018-06-28 14:09 |
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I can't find the workflow about modeling disordered regsion using rosetta? by lihowe » Thu, 2011-12-29 03:45 |
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2,764 |
by wangyr Mon, 2014-04-21 06:47 |
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fragment picking with 100% sequence identity by nawsad » Thu, 2013-12-05 07:12 |
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2,764 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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2,766 |
by smlewis Mon, 2014-04-21 06:47 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
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2,773 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Comparative Modeling Tutorial Script not working by Srinivas23 » Thu, 2017-09-21 12:00 |
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2,774 |
by Srinivas23 Tue, 2017-10-24 10:58 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,774 |
by einew Mon, 2014-04-21 06:47 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
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2,777 |
by smlewis Mon, 2014-04-21 06:47 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
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2,787 |
by pledor Mon, 2014-04-21 06:47 |
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Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh by tsjain » Wed, 2012-08-15 12:20 |
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2,790 |
by smlewis Mon, 2014-04-21 06:47 |
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Multigraft by bo » Tue, 2013-12-24 18:06 |
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2,791 |
by Sergey Menis Mon, 2014-04-21 06:48 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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2,793 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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RosettaDOM by ndousis » Sun, 2010-12-12 01:08 |
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2,800 |
by ndousis Mon, 2014-04-21 06:47 |
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generate full atom coordinates with abinitio rosetta structure prediction by anusmita_sahoo » Tue, 2010-03-30 00:11 |
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2,803 |
by Trentage Mon, 2014-04-21 06:47 |
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RosettaProtein_Docking by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 |
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2,805 |
by rmoretti Fri, 2015-07-03 13:24 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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2,811 |
by rmoretti Fri, 2018-08-03 11:39 |
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How to use RotamerDump to access one and two-body energy tables? by msun » Wed, 2013-01-16 12:26 |
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2,814 |
by msun Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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2,819 |
by smlewis Tue, 2014-12-23 13:58 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
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2,820 |
by smlewis Sun, 2017-11-19 20:08 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
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2,826 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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2,828 |
by rmoretti Mon, 2016-03-07 14:20 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
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2,829 |
by smlewis Mon, 2014-04-21 06:47 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
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2,832 |
by aaxx Wed, 2019-11-06 01:44 |
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Rosetta relax application for generating ensemble of structures. by abhi_pe_acharya » Mon, 2018-02-26 09:08 |
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2,838 |
by ssrb Tue, 2018-03-06 14:15 |
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Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
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2,839 |
by justin Mon, 2014-04-21 06:47 |
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No RMS and IRMS values in protein/nucleic acid docking by rbeier1 » Wed, 2016-01-13 12:41 |
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2,840 |
by smlewis Thu, 2016-01-14 08:19 |
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symmetric docking application rosetta3.2: the docking_local_refine flag by doranhen » Sun, 2012-05-06 02:20 |
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2,842 |
by doranhen Mon, 2014-04-21 06:47 |
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Problems in Loop Modeling by jklett » Mon, 2009-10-19 07:26 |
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2,845 |
by jklett Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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2,847 |
by smlewis Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
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2,850 |
by rmoretti Wed, 2018-11-21 14:11 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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2,855 |
by ela Thu, 2018-08-09 08:04 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
2,856 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
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2,859 |
by ac.research Sun, 2017-09-24 11:25 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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2,873 |
by smlewis Fri, 2016-07-29 07:43 |
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rosettaremodel by berk » Fri, 2013-06-07 00:42 |
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2,877 |
by jadolfbr Mon, 2014-04-21 06:48 |
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relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
3 |
2,883 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
3 |
2,883 |
by smlewis Mon, 2014-04-21 06:47 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
2 |
2,887 |
by gw Mon, 2014-04-21 06:47 |
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Residue variant types and fragments by jadolfbr » Mon, 2013-01-21 09:01 |
2 |
2,887 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
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2,890 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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How to generate score file for loop refinement or modelling? by zhisheng » Fri, 2011-12-09 05:15 |
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2,907 |
by zhisheng Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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2,908 |
by smlewis Mon, 2014-04-21 06:47 |
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sequence_tolerance optimize the binding to chemical compounds by coomteng@gmail.com » Tue, 2015-05-05 07:32 |
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2,916 |
by rmoretti Mon, 2015-05-25 11:00 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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2,921 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to use backrub in rosetta3.1 by lqzhang » Mon, 2010-01-11 14:43 |
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2,922 |
by smlewis Mon, 2014-04-21 06:47 |
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Using mode=profile by Biokhar » Fri, 2012-07-06 00:29 |
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2,923 |
by scombs Mon, 2014-04-21 06:47 |
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How to insert a TER line between docking partners by devroop » Sun, 2012-07-29 13:48 |
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2,926 |
by smlewis Mon, 2014-04-21 06:47 |
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question about scoring silent output files and their contents by burkheadlab » Wed, 2011-07-27 16:28 |
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2,928 |
by rmoretti Mon, 2014-04-21 06:47 |
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rama vs p_aa_pp vs ref score terms by jharamesh » Thu, 2015-12-03 14:24 |
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2,928 |
by rmoretti Thu, 2015-12-03 15:14 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
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2,938 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
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2,939 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
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2,942 |
by vsjasion Mon, 2014-04-21 06:47 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
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2,952 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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What is the difference between F and S labeled decoys? by PaulaBanks » Tue, 2013-08-27 06:09 |
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2,952 |
by PaulaBanks Mon, 2014-04-21 06:48 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
3 |
2,955 |
by ctaylor Mon, 2014-04-21 06:47 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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2,962 |
by fred Fri, 2014-04-04 11:34 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
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2,964 |
by smlewis Mon, 2014-04-21 06:47 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
6 |
2,966 |
by jadolfbr Thu, 2020-09-24 10:04 |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
2,977 |
by jrcf Fri, 2016-02-12 16:41 |
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Creating new residue type for pyridoxal phosphate bound to lysine (LLP) [Solved] by franfdez » Sat, 2012-01-28 11:39 |
1 |
2,977 |
by franfdez Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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2,978 |
by smlewis Mon, 2014-04-21 06:47 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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2,983 |
by scombs Mon, 2014-04-21 06:47 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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2,989 |
by rmoretti Mon, 2014-09-29 13:45 |
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about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
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2,993 |
by smlewis Mon, 2014-04-21 06:47 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
6 |
3,000 |
by matteoferla Tue, 2020-08-11 10:00 |
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Installing Rosetta Abinitio make_fragments.pl by ctaylor » Thu, 2009-09-17 09:20 |
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3,001 |
by ctaylor Mon, 2014-04-21 06:47 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
3 |
3,008 |
by rmoretti Sat, 2017-12-16 12:19 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
1 |
3,010 |
by smlewis Mon, 2014-04-21 06:47 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,013 |
by rmoretti Mon, 2014-04-21 06:48 |
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get_distances command in rosetta 3.5 by pramod » Mon, 2014-01-20 11:31 |
3 |
3,014 |
by rmoretti Mon, 2014-04-21 06:48 |
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[dev] Using h-bonding values in new energy term by ipetrik_ambry » Wed, 2017-03-01 11:33 |
4 |
3,019 |
by ipetrik_ambry Thu, 2017-03-02 15:35 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
3 |
3,021 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb program by Lindsay » Tue, 2012-05-08 13:56 |
3 |
3,022 |
by AndrewLeaver-Fay Mon, 2014-04-21 06:47 |
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How to use Rosetta 3.1 to model the structure of an antibody? by sylvia » Mon, 2009-10-26 14:06 |
2 |
3,027 |
by vanita Mon, 2014-04-21 06:47 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
3 |
3,031 |
by jklett Mon, 2014-04-21 06:47 |
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Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem by ytao » Fri, 2013-06-28 12:13 |
2 |
3,033 |
by ytao Mon, 2014-04-21 06:48 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
3,043 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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3,047 |
by rmoretti Sun, 2015-07-05 14:28 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
3 |
3,056 |
by phanvy Wed, 2014-07-02 23:32 |
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Unknow atom_name: LYS 1HZ in enzdes after match by petrikigor » Fri, 2012-10-19 09:35 |
1 |
3,056 |
by rmoretti Mon, 2014-04-21 06:47 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
2 |
3,064 |
by rmoretti Tue, 2014-06-03 11:45 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,065 |
by rmoretti Mon, 2018-01-15 15:24 |
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